Wall clock time and date at job start Tue Mar 31 2020 20:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.46761 * 2 1 4 4 C 1.35401 * 126.43651 * 264.96805 * 3 2 1 5 5 C 1.35564 * 107.16335 * 180.02562 * 4 3 2 6 6 N 1.33099 * 108.34497 * 359.74087 * 5 4 3 7 7 C 1.31615 * 109.09904 * 0.43084 * 6 5 4 8 8 C 1.47410 * 125.86565 * 179.83146 * 7 6 5 9 9 O 1.21606 * 120.00142 * 185.47158 * 8 7 6 10 10 N 1.34771 * 119.99924 * 5.47617 * 8 7 6 11 11 C 1.46500 * 120.00370 * 5.33850 * 10 8 7 12 12 C 1.46501 * 119.99953 * 185.33911 * 10 8 7 13 13 C 1.53005 * 109.47171 * 270.00184 * 12 10 8 14 14 N 1.46904 * 109.47006 * 180.02562 * 13 12 10 15 15 C 1.46901 * 111.00277 * 66.04290 * 14 13 12 16 16 C 1.46901 * 110.99773 * 189.99914 * 14 13 12 17 17 C 1.50692 * 109.47211 * 169.99460 * 16 14 13 18 18 O 1.21296 * 120.00192 * 0.02562 * 17 16 14 19 19 N 1.34777 * 120.00266 * 179.97438 * 17 16 14 20 20 C 1.37093 * 120.00143 * 180.02562 * 19 17 16 21 21 H 1.08002 * 120.00090 * 0.02562 * 20 19 17 22 22 C 1.38951 * 120.00059 * 180.02562 * 20 19 17 23 23 N 1.31408 * 119.99813 * 179.97438 * 22 20 19 24 24 Si 1.86794 * 119.99972 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47544 * 89.99959 * 24 22 20 26 26 H 1.48500 * 109.47253 * 210.00191 * 24 22 20 27 27 H 1.48502 * 109.47015 * 329.99477 * 24 22 20 28 28 H 1.08998 * 109.47453 * 300.00669 * 1 2 3 29 29 H 1.09004 * 109.46914 * 60.00669 * 1 2 3 30 30 H 1.08999 * 109.47177 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47453 * 239.99331 * 2 1 3 32 32 H 1.09001 * 109.46434 * 119.99470 * 2 1 3 33 33 H 1.08005 * 126.42183 * 0.05995 * 4 3 2 34 34 H 1.07996 * 125.83063 * 180.02562 * 5 4 3 35 35 H 1.08999 * 109.47410 * 275.29530 * 11 10 8 36 36 H 1.09003 * 109.46599 * 35.29668 * 11 10 8 37 37 H 1.09003 * 109.47193 * 155.29127 * 11 10 8 38 38 H 1.09002 * 109.47196 * 30.00009 * 12 10 8 39 39 H 1.08996 * 109.47097 * 150.00062 * 12 10 8 40 40 H 1.09002 * 109.46918 * 299.99995 * 13 12 10 41 41 H 1.08996 * 109.47210 * 59.99947 * 13 12 10 42 42 H 1.09002 * 109.46772 * 60.00179 * 15 14 13 43 43 H 1.08993 * 109.46760 * 179.97438 * 15 14 13 44 44 H 1.08994 * 109.46904 * 299.99968 * 15 14 13 45 45 H 1.09000 * 109.46925 * 290.00019 * 16 14 13 46 46 H 1.09009 * 109.47207 * 49.99858 * 16 14 13 47 47 H 0.97003 * 119.99940 * 0.02562 * 19 17 16 48 48 H 0.97003 * 119.99622 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3764 2.1076 -1.0851 5 6 2.7664 3.3270 -0.6393 6 7 2.6441 3.3474 0.6859 7 6 2.1985 2.1786 1.0952 8 6 1.9333 1.7971 2.4942 9 8 1.6167 0.6543 2.7633 10 7 2.0416 2.7151 3.4750 11 6 2.3077 4.1164 3.1408 12 6 1.8932 2.3115 4.8755 13 6 0.4231 2.4218 5.2851 14 7 0.2744 2.0177 6.6896 15 6 0.9581 2.9613 7.5841 16 6 -1.1429 1.8823 7.0512 17 6 -1.2557 1.2360 8.4078 18 8 -0.2539 0.9197 9.0141 19 7 -2.4697 1.0103 8.9480 20 6 -2.5723 0.4228 10.1824 21 1 -1.6803 0.1412 10.7222 22 6 -3.8239 0.1896 10.7390 23 7 -3.9222 -0.3740 11.9220 24 14 -5.3667 0.6760 9.8050 25 1 -5.8086 -0.4581 8.9543 26 1 -6.4420 1.0192 10.7700 27 1 -5.0762 1.8537 8.9484 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8901 33 1 2.3548 1.7776 -2.1133 34 1 3.1124 4.1442 -1.2548 35 1 3.3810 4.2639 3.0211 36 1 1.7999 4.3707 2.2104 37 1 1.9400 4.7572 3.9423 38 1 2.2270 1.2807 4.9940 39 1 2.4962 2.9636 5.5074 40 1 0.0892 3.4526 5.1666 41 1 -0.1800 1.7697 4.6533 42 1 0.5295 3.9558 7.4593 43 1 0.8318 2.6387 8.6175 44 1 2.0198 2.9898 7.3392 45 1 -1.6067 2.8683 7.0787 46 1 -1.6493 1.2631 6.3106 47 1 -3.2709 1.2635 8.4633 48 1 -4.7959 -0.5365 12.3107 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667556525.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:25 Heat of formation + Delta-G solvation = 26.049125 kcal Electronic energy + Delta-G solvation = -29184.186852 eV Core-core repulsion = 25083.843966 eV Total energy + Delta-G solvation = -4100.342887 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.68000 -39.79894 -38.70730 -36.90268 -35.91244 -34.95287 -33.86266 -31.65180 -31.17444 -30.41295 -29.33852 -27.86136 -26.85102 -25.63506 -24.49496 -23.95619 -22.56174 -21.78514 -20.92841 -19.47690 -19.28162 -18.21473 -17.66596 -16.83700 -16.58925 -16.12367 -15.99345 -15.27883 -15.15727 -15.00668 -14.87792 -14.69543 -14.22815 -14.07041 -13.89224 -13.72857 -13.42627 -13.17178 -13.06630 -13.02670 -12.93422 -12.50653 -12.44460 -12.38003 -12.09008 -11.88575 -11.71075 -11.41730 -11.31850 -11.00510 -10.85451 -10.57326 -10.48047 -10.28854 -10.09334 -9.94897 -9.50862 -9.06258 -8.84536 -8.49718 -8.14837 -7.93219 -6.28210 -3.79234 1.04905 2.04013 2.27825 2.84183 3.04576 3.09194 3.10619 3.16911 3.77647 3.87418 4.08705 4.13377 4.24368 4.31933 4.57437 4.79436 4.84408 4.85907 4.93874 5.03586 5.06427 5.10025 5.23825 5.24758 5.32362 5.42183 5.47171 5.55816 5.62420 5.67270 5.70988 5.77784 5.85571 5.87389 5.91759 5.95705 6.01939 6.19808 6.33624 6.51705 6.54739 7.01955 7.17166 7.33292 7.42493 7.61778 7.85812 8.18000 8.63685 8.98581 9.45845 9.87310 10.84986 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018168 B = 0.002179 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.795947 B =12847.020909 C =13698.516155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.092 3.908 3 N -0.412 5.412 4 C -0.030 4.030 5 C -0.033 4.033 6 N -0.442 5.442 7 C 0.144 3.856 8 C 0.601 3.399 9 O -0.531 6.531 10 N -0.592 5.592 11 C 0.082 3.918 12 C 0.122 3.878 13 C 0.043 3.957 14 N -0.515 5.515 15 C 0.018 3.982 16 C 0.045 3.955 17 C 0.454 3.546 18 O -0.558 6.558 19 N -0.592 5.592 20 C -0.303 4.303 21 H 0.120 0.880 22 C 0.040 3.960 23 N -0.882 5.882 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.113 0.887 33 H 0.181 0.819 34 H 0.177 0.823 35 H 0.062 0.938 36 H 0.092 0.908 37 H 0.065 0.935 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.032 0.968 41 H 0.076 0.924 42 H 0.015 0.985 43 H 0.097 0.903 44 H 0.062 0.938 45 H 0.048 0.952 46 H 0.089 0.911 47 H 0.370 0.630 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.319 8.731 -29.460 32.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.029 4.029 3 N -0.093 5.093 4 C -0.168 4.168 5 C -0.186 4.186 6 N -0.165 5.165 7 C -0.115 4.115 8 C 0.387 3.613 9 O -0.407 6.407 10 N -0.324 5.324 11 C -0.060 4.060 12 C -0.001 4.001 13 C -0.086 4.086 14 N -0.240 5.240 15 C -0.130 4.130 16 C -0.087 4.087 17 C 0.240 3.760 18 O -0.440 6.440 19 N -0.232 5.232 20 C -0.431 4.431 21 H 0.138 0.862 22 C -0.162 4.162 23 N -0.522 5.522 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.111 0.889 32 H 0.131 0.869 33 H 0.198 0.802 34 H 0.194 0.806 35 H 0.080 0.920 36 H 0.110 0.890 37 H 0.083 0.917 38 H 0.115 0.885 39 H 0.102 0.898 40 H 0.050 0.950 41 H 0.095 0.905 42 H 0.034 0.966 43 H 0.116 0.884 44 H 0.081 0.919 45 H 0.066 0.934 46 H 0.107 0.893 47 H 0.202 0.798 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.025 7.823 -28.054 31.141 hybrid contribution -1.957 0.604 -1.489 2.533 sum 9.067 8.427 -29.543 32.032 Atomic orbital electron populations 1.22068 0.93387 1.03688 1.02937 1.22194 0.96441 0.78621 1.05641 1.45299 1.44879 1.12999 1.06080 1.22938 1.06647 0.94119 0.93117 1.22497 1.07264 0.97491 0.91345 1.70433 1.15571 1.18282 1.12176 1.22626 1.10265 0.88402 0.90248 1.16545 0.77838 0.84909 0.82033 1.90840 1.48036 1.19149 1.82703 1.47495 1.69615 1.09218 1.06079 1.22096 1.02192 0.79570 1.02170 1.21561 0.96596 1.03173 0.78741 1.22439 0.97052 0.98847 0.90285 1.61453 1.12216 1.49100 1.01189 1.22625 0.97995 0.92117 1.00247 1.21885 0.89271 0.99882 0.97621 1.19625 0.84033 0.84860 0.87477 1.90525 1.35630 1.54715 1.63087 1.42214 1.05998 1.56209 1.18772 1.19426 0.96077 1.35213 0.92433 0.86248 1.25034 0.97748 0.97400 0.96054 1.69623 1.24939 1.42163 1.15517 0.86674 0.83641 0.79022 0.80061 1.19625 1.20233 1.19558 0.91404 0.92288 0.90076 0.88908 0.86855 0.80160 0.80582 0.91953 0.89008 0.91653 0.88522 0.89753 0.95027 0.90504 0.96639 0.88416 0.91896 0.93372 0.89292 0.79753 0.91666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.16 10.24 37.16 0.38 -0.78 16 2 C 0.09 0.67 6.25 -4.04 -0.03 0.65 16 3 N -0.41 -3.69 2.76 -114.58 -0.32 -4.00 16 4 C -0.03 -0.20 11.53 -16.93 -0.20 -0.40 16 5 C -0.03 -0.26 11.85 -17.96 -0.21 -0.47 16 6 N -0.44 -4.56 7.92 -11.26 -0.09 -4.65 16 7 C 0.14 1.61 7.44 -154.52 -1.15 0.46 16 8 C 0.60 7.65 7.65 -12.53 -0.10 7.56 16 9 O -0.53 -7.90 14.41 5.27 0.08 -7.82 16 10 N -0.59 -6.72 2.87 -182.85 -0.53 -7.25 16 11 C 0.08 0.74 9.29 59.85 0.56 1.29 16 12 C 0.12 1.47 5.27 -4.04 -0.02 1.45 16 13 C 0.04 0.57 5.28 -3.82 -0.02 0.55 16 14 N -0.52 -8.54 4.50 -244.37 -1.10 -9.64 16 15 C 0.02 0.28 8.96 60.07 0.54 0.82 16 16 C 0.04 0.79 5.45 -4.98 -0.03 0.76 16 17 C 0.45 10.52 7.47 -10.99 -0.08 10.44 16 18 O -0.56 -15.02 13.91 5.54 0.08 -14.94 16 19 N -0.59 -14.36 5.09 -10.97 -0.06 -14.41 16 20 C -0.30 -8.65 10.16 -14.93 -0.15 -8.80 16 21 H 0.12 3.89 7.39 -52.49 -0.39 3.50 16 22 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 23 N -0.88 -26.01 13.96 55.50 0.77 -25.23 16 24 Si 0.88 19.63 27.74 -169.99 -4.71 14.91 16 25 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 26 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 27 H -0.27 -5.50 6.52 56.52 0.37 -5.13 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.41 8.13 -51.93 -0.42 -0.02 16 32 H 0.11 1.04 6.53 -51.93 -0.34 0.70 16 33 H 0.18 0.55 8.06 -52.48 -0.42 0.13 16 34 H 0.18 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 36 H 0.09 0.87 5.90 -51.93 -0.31 0.56 16 37 H 0.06 0.49 8.03 -51.93 -0.42 0.08 16 38 H 0.10 1.37 7.50 -51.93 -0.39 0.98 16 39 H 0.08 0.89 6.48 -51.93 -0.34 0.56 16 40 H 0.03 0.38 8.12 -51.93 -0.42 -0.04 16 41 H 0.08 1.09 7.93 -51.93 -0.41 0.68 16 42 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 43 H 0.10 1.88 5.82 -51.93 -0.30 1.58 16 44 H 0.06 0.84 6.47 -51.93 -0.34 0.50 16 45 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 46 H 0.09 1.41 7.93 -51.92 -0.41 1.00 16 47 H 0.37 7.90 5.76 -40.82 -0.24 7.67 16 48 H 0.27 7.42 8.31 -40.82 -0.34 7.09 16 LS Contribution 391.46 15.07 5.90 5.90 Total: -1.00 -35.34 391.46 -7.84 -43.18 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -7.27 Total: 9.40 kcal Atomic # 6 Polarization: 15.16 SS G_CDS: -0.60 Total: 14.56 kcal Atomic # 7 Polarization: -63.87 SS G_CDS: -1.31 Total: -65.19 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: 0.15 Total: -22.76 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.71 Total: 14.91 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.34 -7.84 -43.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667556525.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.233 kcal (2) G-P(sol) polarization free energy of solvation -35.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds