Wall clock time and date at job start Tue Mar 31 2020 20:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.46761 * 2 1 4 4 C 1.35401 * 126.43651 * 264.96805 * 3 2 1 5 5 C 1.35564 * 107.16335 * 180.02562 * 4 3 2 6 6 N 1.33099 * 108.34497 * 359.74087 * 5 4 3 7 7 C 1.31615 * 109.09904 * 0.43084 * 6 5 4 8 8 C 1.47410 * 125.86565 * 179.83146 * 7 6 5 9 9 O 1.21606 * 120.00142 * 185.47158 * 8 7 6 10 10 N 1.34771 * 119.99924 * 5.47617 * 8 7 6 11 11 C 1.46500 * 120.00370 * 5.33850 * 10 8 7 12 12 C 1.46501 * 119.99953 * 185.33911 * 10 8 7 13 13 C 1.53005 * 109.47171 * 270.00184 * 12 10 8 14 14 N 1.46904 * 109.47006 * 180.02562 * 13 12 10 15 15 C 1.46901 * 111.00277 * 66.04290 * 14 13 12 16 16 C 1.46901 * 110.99773 * 189.99914 * 14 13 12 17 17 C 1.50692 * 109.47211 * 169.99460 * 16 14 13 18 18 O 1.21296 * 120.00192 * 0.02562 * 17 16 14 19 19 N 1.34777 * 120.00266 * 179.97438 * 17 16 14 20 20 C 1.37093 * 120.00143 * 180.02562 * 19 17 16 21 21 H 1.08002 * 120.00090 * 0.02562 * 20 19 17 22 22 C 1.38951 * 120.00059 * 180.02562 * 20 19 17 23 23 N 1.31408 * 119.99813 * 179.97438 * 22 20 19 24 24 Si 1.86794 * 119.99972 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47544 * 89.99959 * 24 22 20 26 26 H 1.48500 * 109.47253 * 210.00191 * 24 22 20 27 27 H 1.48502 * 109.47015 * 329.99477 * 24 22 20 28 28 H 1.08998 * 109.47453 * 300.00669 * 1 2 3 29 29 H 1.09004 * 109.46914 * 60.00669 * 1 2 3 30 30 H 1.08999 * 109.47177 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47453 * 239.99331 * 2 1 3 32 32 H 1.09001 * 109.46434 * 119.99470 * 2 1 3 33 33 H 1.08005 * 126.42183 * 0.05995 * 4 3 2 34 34 H 1.07996 * 125.83063 * 180.02562 * 5 4 3 35 35 H 1.08999 * 109.47410 * 275.29530 * 11 10 8 36 36 H 1.09003 * 109.46599 * 35.29668 * 11 10 8 37 37 H 1.09003 * 109.47193 * 155.29127 * 11 10 8 38 38 H 1.09002 * 109.47196 * 30.00009 * 12 10 8 39 39 H 1.08996 * 109.47097 * 150.00062 * 12 10 8 40 40 H 1.09002 * 109.46918 * 299.99995 * 13 12 10 41 41 H 1.08996 * 109.47210 * 59.99947 * 13 12 10 42 42 H 1.09002 * 109.46772 * 60.00179 * 15 14 13 43 43 H 1.08993 * 109.46760 * 179.97438 * 15 14 13 44 44 H 1.08994 * 109.46904 * 299.99968 * 15 14 13 45 45 H 1.09000 * 109.46925 * 290.00019 * 16 14 13 46 46 H 1.09009 * 109.47207 * 49.99858 * 16 14 13 47 47 H 0.97003 * 119.99940 * 0.02562 * 19 17 16 48 48 H 0.97003 * 119.99622 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3764 2.1076 -1.0851 5 6 2.7664 3.3270 -0.6393 6 7 2.6441 3.3474 0.6859 7 6 2.1985 2.1786 1.0952 8 6 1.9333 1.7971 2.4942 9 8 1.6167 0.6543 2.7633 10 7 2.0416 2.7151 3.4750 11 6 2.3077 4.1164 3.1408 12 6 1.8932 2.3115 4.8755 13 6 0.4231 2.4218 5.2851 14 7 0.2744 2.0177 6.6896 15 6 0.9581 2.9613 7.5841 16 6 -1.1429 1.8823 7.0512 17 6 -1.2557 1.2360 8.4078 18 8 -0.2539 0.9197 9.0141 19 7 -2.4697 1.0103 8.9480 20 6 -2.5723 0.4228 10.1824 21 1 -1.6803 0.1412 10.7222 22 6 -3.8239 0.1896 10.7390 23 7 -3.9222 -0.3740 11.9220 24 14 -5.3667 0.6760 9.8050 25 1 -5.8086 -0.4581 8.9543 26 1 -6.4420 1.0192 10.7700 27 1 -5.0762 1.8537 8.9484 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8901 33 1 2.3548 1.7776 -2.1133 34 1 3.1124 4.1442 -1.2548 35 1 3.3810 4.2639 3.0211 36 1 1.7999 4.3707 2.2104 37 1 1.9400 4.7572 3.9423 38 1 2.2270 1.2807 4.9940 39 1 2.4962 2.9636 5.5074 40 1 0.0892 3.4526 5.1666 41 1 -0.1800 1.7697 4.6533 42 1 0.5295 3.9558 7.4593 43 1 0.8318 2.6387 8.6175 44 1 2.0198 2.9898 7.3392 45 1 -1.6067 2.8683 7.0787 46 1 -1.6493 1.2631 6.3106 47 1 -3.2709 1.2635 8.4633 48 1 -4.7959 -0.5365 12.3107 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667556525.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:24 Heat of formation + Delta-G solvation = -0.086579 kcal Electronic energy + Delta-G solvation = -29185.320181 eV Core-core repulsion = 25083.843966 eV Total energy + Delta-G solvation = -4101.476216 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.31361 -40.79317 -40.37283 -38.20204 -36.84508 -35.94475 -35.64027 -33.75770 -32.01027 -31.12008 -30.23827 -29.21159 -27.67243 -27.06721 -25.79851 -24.83266 -23.49504 -22.50544 -21.90880 -21.26704 -20.30231 -20.10492 -18.37388 -17.90814 -17.71532 -17.22253 -16.97451 -16.75240 -16.55937 -16.06313 -15.91963 -15.56622 -15.46034 -15.18517 -14.88032 -14.78828 -14.61913 -14.41370 -14.26791 -14.08911 -13.95915 -13.69983 -13.62966 -13.23080 -13.11290 -13.04432 -13.00022 -12.61332 -12.53560 -12.40946 -12.28402 -11.98121 -11.90175 -11.47834 -11.35006 -10.95079 -10.77867 -10.41780 -10.23566 -9.86424 -9.47368 -9.22922 -8.41197 -6.01650 0.32494 1.29255 1.34953 1.35802 1.43511 1.64365 1.95014 2.07389 2.22601 2.32985 2.67968 3.14207 3.16789 3.28956 3.72181 3.79108 3.90709 4.02557 4.02929 4.08905 4.31561 4.34273 4.37605 4.39841 4.41542 4.43424 4.49309 4.60255 4.63092 4.68906 4.75704 4.78936 4.82114 4.93959 5.07766 5.11803 5.21979 5.27406 5.43101 5.53111 5.71607 5.86982 5.93253 5.99186 6.12622 6.20733 6.59803 6.73711 6.88523 7.03015 7.39630 7.96888 8.76443 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018168 B = 0.002179 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.795947 B =12847.020909 C =13698.516155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.091 3.909 3 N -0.415 5.415 4 C -0.010 4.010 5 C -0.048 4.048 6 N -0.451 5.451 7 C 0.104 3.896 8 C 0.594 3.406 9 O -0.566 6.566 10 N -0.591 5.591 11 C 0.086 3.914 12 C 0.128 3.872 13 C 0.055 3.945 14 N -0.541 5.541 15 C 0.023 3.977 16 C 0.056 3.944 17 C 0.453 3.547 18 O -0.603 6.603 19 N -0.593 5.593 20 C -0.326 4.326 21 H 0.056 0.944 22 C -0.016 4.016 23 N -0.934 5.934 24 Si 0.964 3.036 25 H -0.259 1.259 26 H -0.274 1.274 27 H -0.232 1.232 28 H 0.035 0.965 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.129 0.871 32 H 0.087 0.913 33 H 0.223 0.777 34 H 0.204 0.796 35 H 0.064 0.936 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.103 0.897 40 H 0.055 0.945 41 H 0.066 0.934 42 H 0.039 0.961 43 H 0.054 0.946 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.111 0.889 47 H 0.389 0.611 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.163 10.941 -33.914 36.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.030 4.030 3 N -0.095 5.095 4 C -0.149 4.149 5 C -0.201 4.201 6 N -0.174 5.174 7 C -0.153 4.153 8 C 0.381 3.619 9 O -0.445 6.445 10 N -0.322 5.322 11 C -0.055 4.055 12 C 0.005 3.995 13 C -0.074 4.074 14 N -0.266 5.266 15 C -0.124 4.124 16 C -0.075 4.075 17 C 0.240 3.760 18 O -0.487 6.487 19 N -0.235 5.235 20 C -0.455 4.455 21 H 0.074 0.926 22 C -0.215 4.215 23 N -0.575 5.575 24 Si 0.784 3.216 25 H -0.183 1.183 26 H -0.199 1.199 27 H -0.155 1.155 28 H 0.054 0.946 29 H 0.091 0.909 30 H 0.110 0.890 31 H 0.147 0.853 32 H 0.106 0.894 33 H 0.240 0.760 34 H 0.221 0.779 35 H 0.083 0.917 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.121 0.879 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.057 0.943 43 H 0.073 0.927 44 H 0.101 0.899 45 H 0.099 0.901 46 H 0.129 0.871 47 H 0.224 0.776 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.888 10.066 -32.520 35.449 hybrid contribution -1.421 -0.102 -0.153 1.432 sum 8.467 9.964 -32.672 35.192 Atomic orbital electron populations 1.22009 0.93328 1.04136 1.01930 1.22275 0.96451 0.78137 1.06129 1.45501 1.44484 1.13402 1.06159 1.23678 1.03777 0.93299 0.94128 1.23102 1.07420 0.98945 0.90675 1.70373 1.15277 1.18019 1.13732 1.22332 1.13315 0.89593 0.90066 1.16888 0.77314 0.84619 0.83090 1.90810 1.49751 1.20477 1.83433 1.47560 1.69176 1.10049 1.05455 1.22161 1.02381 0.78296 1.02684 1.21414 0.96212 1.02161 0.79727 1.22348 0.97552 0.99670 0.87818 1.61362 1.11737 1.50508 1.02965 1.22509 0.99515 0.92777 0.97647 1.21797 0.90668 1.01176 0.93849 1.20805 0.82894 0.83204 0.89062 1.90515 1.37220 1.56072 1.64873 1.42038 1.07336 1.56515 1.17586 1.18995 0.94683 1.37415 0.94417 0.92581 1.26106 1.01886 0.96500 0.96974 1.69804 1.26512 1.43355 1.17821 0.85370 0.77062 0.80251 0.78878 1.18307 1.19875 1.15547 0.94608 0.90876 0.88962 0.85314 0.89420 0.76038 0.77899 0.91742 0.89346 0.89797 0.91236 0.87927 0.92729 0.91571 0.94260 0.92719 0.89878 0.90132 0.87100 0.77597 0.91163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 10.24 71.98 0.74 -1.32 16 2 C 0.09 1.21 6.25 86.38 0.54 1.75 16 3 N -0.41 -6.74 2.76 -516.44 -1.42 -8.17 16 4 C -0.01 -0.10 11.53 83.52 0.96 0.86 16 5 C -0.05 -0.61 11.85 83.88 0.99 0.38 16 6 N -0.45 -8.64 7.92 -189.53 -1.50 -10.14 16 7 C 0.10 2.26 7.44 136.28 1.01 3.27 16 8 C 0.59 15.35 7.65 86.66 0.66 16.01 16 9 O -0.57 -17.64 14.41 -4.05 -0.06 -17.70 16 10 N -0.59 -13.07 2.87 -850.68 -2.44 -15.52 16 11 C 0.09 1.41 9.29 127.77 1.19 2.59 16 12 C 0.13 3.01 5.27 86.38 0.46 3.47 16 13 C 0.05 1.37 5.28 86.30 0.46 1.82 16 14 N -0.54 -17.34 4.50 -927.04 -4.17 -21.51 16 15 C 0.02 0.70 8.96 127.69 1.14 1.84 16 16 C 0.06 1.87 5.45 85.55 0.47 2.33 16 17 C 0.45 21.21 7.47 87.65 0.66 21.87 16 18 O -0.60 -34.10 13.91 -3.08 -0.04 -34.15 16 19 N -0.59 -28.81 5.09 -306.99 -1.56 -30.37 16 20 C -0.33 -19.46 10.16 84.04 0.85 -18.61 16 21 H 0.06 3.97 7.39 -2.91 -0.02 3.95 16 22 C -0.02 -0.91 5.50 84.93 0.47 -0.45 16 23 N -0.93 -57.11 13.96 21.66 0.30 -56.81 16 24 Si 0.96 39.60 27.74 68.60 1.90 41.50 16 25 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 26 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 27 H -0.23 -8.05 6.52 99.48 0.65 -7.40 16 28 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.13 0.74 8.13 -2.39 -0.02 0.72 16 32 H 0.09 1.66 6.53 -2.39 -0.02 1.64 16 33 H 0.22 0.20 8.06 -2.91 -0.02 0.17 16 34 H 0.20 1.25 8.06 -2.91 -0.02 1.22 16 35 H 0.06 1.02 8.13 -2.39 -0.02 1.00 16 36 H 0.09 1.54 5.90 -2.39 -0.01 1.53 16 37 H 0.08 1.04 8.03 -2.39 -0.02 1.02 16 38 H 0.07 2.03 7.50 -2.39 -0.02 2.02 16 39 H 0.10 2.01 6.48 -2.39 -0.02 1.99 16 40 H 0.05 1.14 8.12 -2.39 -0.02 1.12 16 41 H 0.07 1.81 7.93 -2.39 -0.02 1.79 16 42 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.05 2.16 5.82 -2.39 -0.01 2.14 16 44 H 0.08 2.11 6.47 -2.39 -0.02 2.10 16 45 H 0.08 2.20 8.12 -2.39 -0.02 2.18 16 46 H 0.11 3.23 7.93 -2.38 -0.02 3.21 16 47 H 0.39 15.73 5.76 -92.71 -0.53 15.19 16 48 H 0.28 15.57 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -85.11 391.46 1.98 -83.13 By element: Atomic # 1 Polarization: 33.52 SS G_CDS: 0.38 Total: 33.91 kcal Atomic # 6 Polarization: 25.23 SS G_CDS: 10.59 Total: 35.82 kcal Atomic # 7 Polarization: -131.72 SS G_CDS: -10.80 Total: -142.52 kcal Atomic # 8 Polarization: -51.74 SS G_CDS: -0.10 Total: -51.85 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 1.90 Total: 41.50 kcal Total: -85.11 1.98 -83.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667556525.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.047 kcal (2) G-P(sol) polarization free energy of solvation -85.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds