Wall clock time and date at job start Tue Mar 31 2020 19:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.47160 * 2 1 4 4 C 1.53001 * 109.47151 * 240.00232 * 2 1 3 5 5 C 1.52996 * 109.47129 * 174.99953 * 4 2 1 6 6 N 1.46495 * 109.47338 * 179.97438 * 5 4 2 7 7 C 1.36941 * 120.00455 * 179.97438 * 6 5 4 8 8 H 1.07994 * 119.99714 * 0.02562 * 7 6 5 9 9 C 1.38813 * 120.00073 * 180.02562 * 7 6 5 10 10 N 1.31616 * 120.00110 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 119.99836 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47291 * 59.99626 * 11 9 7 13 13 H 1.48500 * 109.47207 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47315 * 300.00005 * 11 9 7 15 15 N 1.46494 * 109.47202 * 119.99811 * 2 1 3 16 16 C 1.34781 * 120.00111 * 274.99999 * 15 2 1 17 17 O 1.21591 * 119.99992 * 359.97438 * 16 15 2 18 18 C 1.47524 * 119.99733 * 180.02562 * 16 15 2 19 19 C 1.36592 * 125.77018 * 180.30856 * 18 16 15 20 20 N 1.34810 * 106.84377 * 180.17781 * 19 18 16 21 21 C 1.46502 * 126.59661 * 179.84770 * 20 19 18 22 22 C 1.53005 * 109.46915 * 124.71067 * 21 20 19 23 23 H 1.08997 * 110.81024 * 302.82768 * 22 21 20 24 24 C 1.54806 * 110.93853 * 179.17271 * 22 21 20 25 25 C 1.54099 * 104.19470 * 220.91054 * 24 22 21 26 26 O 1.43889 * 107.37252 * 358.10337 * 25 24 22 27 27 C 1.44388 * 106.89814 * 26.27302 * 26 25 24 28 28 N 1.40208 * 106.80588 * 359.58525 * 20 19 18 29 29 N 1.28758 * 108.36903 * 0.26570 * 28 20 19 30 30 H 1.08997 * 109.47340 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47173 * 300.00127 * 1 2 3 32 32 H 1.09003 * 109.47536 * 60.00092 * 1 2 3 33 33 H 1.09003 * 109.46957 * 294.99797 * 4 2 1 34 34 H 1.08993 * 109.47310 * 54.99781 * 4 2 1 35 35 H 1.09003 * 109.47074 * 299.99773 * 5 4 2 36 36 H 1.09000 * 109.47312 * 59.99370 * 5 4 2 37 37 H 0.97003 * 119.99770 * 0.02562 * 6 5 4 38 38 H 0.97001 * 119.99953 * 179.97438 * 10 9 7 39 39 H 0.97003 * 119.99756 * 95.00442 * 15 2 1 40 40 H 1.08005 * 126.58183 * 0.03316 * 19 18 16 41 41 H 1.08995 * 109.46934 * 4.71620 * 21 20 19 42 42 H 1.08997 * 109.47047 * 244.70844 * 21 20 19 43 43 H 1.09002 * 110.48575 * 339.59172 * 24 22 21 44 44 H 1.09004 * 110.48517 * 102.10161 * 24 22 21 45 45 H 1.09001 * 109.87936 * 117.39322 * 25 24 22 46 46 H 1.08993 * 109.88056 * 238.39954 * 25 24 22 47 47 H 1.09002 * 110.61854 * 201.57804 * 27 26 25 48 48 H 1.09000 * 110.62045 * 78.73713 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5647 -0.6132 -1.3137 6 7 4.0532 -1.3043 -2.5095 7 6 5.3952 -1.3403 -2.7795 8 1 6.0936 -0.8596 -2.1106 9 6 5.8579 -1.9947 -3.9129 10 7 5.0068 -2.5809 -4.7279 11 14 7.6886 -2.0443 -4.2807 12 1 8.4000 -2.7156 -3.1633 13 1 7.9205 -2.7986 -5.5387 14 1 8.2009 -0.6588 -4.4322 15 7 2.0183 -0.6905 1.1961 16 6 2.1470 -0.0181 2.3571 17 8 1.8583 1.1617 2.4116 18 6 2.6393 -0.7135 3.5615 19 6 2.8089 -0.1513 4.7947 20 7 3.2764 -1.1217 5.6054 21 6 3.6113 -0.9875 7.0253 22 6 2.8315 -2.0265 7.8336 23 1 1.7591 -1.9175 7.6721 24 6 3.1762 -1.9283 9.3396 25 6 3.2752 -3.3952 9.8011 26 8 2.9656 -4.2243 8.6665 27 6 3.3000 -3.4626 7.4864 28 7 3.3747 -2.2855 4.8298 29 7 2.9917 -2.0085 3.6321 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.7516 -1.7715 -1.2056 34 1 1.6053 -0.2617 -2.1369 35 1 3.8531 0.4371 -1.3574 36 1 3.9994 -1.0727 -0.4260 37 1 3.4258 -1.7357 -3.1106 38 1 5.3301 -3.0379 -5.5201 39 1 2.2490 -1.6317 1.1525 40 1 2.6092 0.8745 5.0675 41 1 3.3466 0.0128 7.3681 42 1 4.6806 -1.1477 7.1631 43 1 4.1296 -1.4189 9.4803 44 1 2.3840 -1.4092 9.8792 45 1 4.2869 -3.6075 10.1468 46 1 2.5626 -3.5798 10.6049 47 1 2.7610 -3.8429 6.6186 48 1 4.3752 -3.4831 7.3082 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001668259613.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:39 Heat of formation + Delta-G solvation = 18.734768 kcal Electronic energy + Delta-G solvation = -28455.447598 eV Core-core repulsion = 24354.787537 eV Total energy + Delta-G solvation = -4100.660061 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.48627 -39.99134 -39.47864 -36.47698 -35.75004 -34.29885 -32.83470 -32.00163 -31.20292 -30.48085 -29.69371 -27.81572 -27.07117 -24.42078 -23.68799 -23.32582 -22.41441 -21.63972 -21.35418 -20.73092 -20.29862 -18.47286 -17.22235 -16.99909 -16.59866 -16.36591 -16.16513 -15.92141 -15.55988 -14.97340 -14.79579 -14.70097 -14.46051 -14.17469 -13.74533 -13.69438 -13.45094 -13.26308 -13.19760 -12.78555 -12.57846 -12.35049 -12.25407 -12.03129 -11.84392 -11.78928 -11.45227 -11.31732 -11.15141 -10.96942 -10.73446 -10.69008 -10.59364 -10.52546 -10.18911 -10.08015 -10.01663 -9.64634 -9.53603 -8.95239 -8.79847 -6.86543 -5.71346 -2.99661 0.85632 1.57014 1.63517 3.16704 3.27429 3.31920 3.48160 3.51920 3.53363 3.70744 3.88701 3.92191 4.04825 4.35497 4.38248 4.49962 4.50905 4.62350 4.67451 4.73121 4.81976 5.00185 5.01384 5.08726 5.18246 5.28414 5.29497 5.40236 5.41456 5.47659 5.58092 5.60663 5.78209 5.81846 5.99240 6.00433 6.07333 6.29924 6.33591 6.34081 6.39767 6.57748 6.89111 6.93238 7.49677 7.74858 7.78313 8.22022 8.47868 9.58696 10.16978 10.51795 11.51576 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012148 B = 0.002130 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2304.377923 B =13144.939874 C =14675.609965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 H 0.091 0.909 4 C -0.135 4.135 5 C 0.153 3.847 6 N -0.733 5.733 7 C -0.238 4.238 8 H 0.069 0.931 9 C -0.015 4.015 10 N -0.934 5.934 11 Si 0.907 3.093 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.286 1.286 15 N -0.701 5.701 16 C 0.605 3.395 17 O -0.545 6.545 18 C -0.097 4.097 19 C 0.093 3.907 20 N -0.365 5.365 21 C 0.132 3.868 22 C -0.138 4.138 23 H 0.095 0.905 24 C -0.147 4.147 25 C 0.045 3.955 26 O -0.376 6.376 27 C 0.057 3.943 28 N -0.063 5.063 29 N -0.197 5.197 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.018 0.982 36 H 0.020 0.980 37 H 0.383 0.617 38 H 0.255 0.745 39 H 0.410 0.590 40 H 0.204 0.796 41 H 0.111 0.889 42 H 0.103 0.897 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.061 0.939 46 H 0.085 0.915 47 H 0.104 0.896 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.354 4.667 31.161 32.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.041 3.959 3 H 0.109 0.891 4 C -0.173 4.173 5 C 0.026 3.974 6 N -0.377 5.377 7 C -0.369 4.369 8 H 0.087 0.913 9 C -0.211 4.211 10 N -0.583 5.583 11 Si 0.738 3.262 12 H -0.213 1.213 13 H -0.217 1.217 14 H -0.213 1.213 15 N -0.351 5.351 16 C 0.388 3.612 17 O -0.422 6.422 18 C -0.236 4.236 19 C -0.063 4.063 20 N -0.150 5.150 21 C 0.011 3.989 22 C -0.158 4.158 23 H 0.114 0.886 24 C -0.185 4.185 25 C -0.032 4.032 26 O -0.295 6.295 27 C -0.020 4.020 28 N -0.044 5.044 29 N -0.071 5.071 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.035 0.965 36 H 0.038 0.962 37 H 0.217 0.783 38 H 0.065 0.935 39 H 0.246 0.754 40 H 0.221 0.779 41 H 0.129 0.871 42 H 0.121 0.879 43 H 0.101 0.899 44 H 0.103 0.897 45 H 0.079 0.921 46 H 0.103 0.897 47 H 0.122 0.878 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.068 3.841 31.212 32.466 hybrid contribution 0.879 0.676 -0.272 1.142 sum -7.189 4.517 30.940 32.084 Atomic orbital electron populations 1.22166 0.95287 1.02162 1.02317 1.21043 0.93664 0.97698 0.83506 0.89136 1.22069 0.98094 1.00955 0.96231 1.20643 0.90392 0.95576 0.90838 1.42348 1.05338 1.64954 1.25108 1.19185 0.83884 1.28414 1.05404 0.91343 1.24738 0.97676 1.00970 0.97738 1.69648 1.32813 1.40728 1.15130 0.86259 0.85210 0.77435 0.77249 1.21301 1.21684 1.21313 1.45937 1.65501 1.14759 1.08953 1.16725 0.77253 0.85532 0.81641 1.90790 1.51760 1.14820 1.84830 1.21551 1.14364 0.91580 0.96102 1.23372 0.96136 0.96648 0.90185 1.50501 1.44802 1.08856 1.10870 1.22031 1.01570 1.01436 0.73878 1.23075 1.01607 0.96198 0.94898 0.88620 1.22943 1.03311 0.98285 0.93999 1.23175 1.01130 0.88678 0.90188 1.88966 1.86315 1.39518 1.14718 1.23686 1.00721 0.88427 0.89167 1.81975 1.21957 1.04325 0.96111 1.74695 1.07799 1.13057 1.11528 0.92409 0.92391 0.91400 0.91203 0.90113 0.96457 0.96228 0.78310 0.93516 0.75405 0.77880 0.87083 0.87894 0.89939 0.89707 0.92072 0.89652 0.87755 0.91481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.48 37.15 0.35 -1.56 16 2 C 0.15 2.02 2.57 -67.94 -0.17 1.85 16 3 H 0.09 1.37 7.58 -51.93 -0.39 0.98 16 4 C -0.14 -2.16 4.87 -26.73 -0.13 -2.29 16 5 C 0.15 3.17 6.15 -4.05 -0.02 3.15 16 6 N -0.73 -19.12 5.60 -59.91 -0.34 -19.46 16 7 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 10 N -0.93 -28.81 13.06 55.49 0.72 -28.08 16 11 Si 0.91 23.00 29.55 -169.99 -5.02 17.98 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 14 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 15 N -0.70 -9.75 4.53 -54.85 -0.25 -10.00 16 16 C 0.60 8.57 7.78 -12.47 -0.10 8.47 16 17 O -0.54 -8.71 16.53 5.29 0.09 -8.62 16 18 C -0.10 -1.20 6.99 -83.55 -0.58 -1.78 16 19 C 0.09 0.82 11.27 -16.84 -0.19 0.63 16 20 N -0.37 -2.93 3.69 -61.06 -0.23 -3.16 16 21 C 0.13 0.50 5.93 -4.04 -0.02 0.48 16 22 C -0.14 -0.65 3.37 -88.61 -0.30 -0.95 16 23 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 24 C -0.15 -0.43 6.60 -25.21 -0.17 -0.59 16 25 C 0.05 0.23 7.70 37.73 0.29 0.52 16 26 O -0.38 -3.37 11.54 -35.23 -0.41 -3.77 16 27 C 0.06 0.43 6.09 38.21 0.23 0.66 16 28 N -0.06 -0.74 11.79 60.35 0.71 -0.02 16 29 N -0.20 -2.65 12.04 32.84 0.40 -2.25 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.02 0.42 7.75 -51.93 -0.40 0.02 16 37 H 0.38 10.38 7.67 -40.82 -0.31 10.07 16 38 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 39 H 0.41 5.63 8.29 -40.82 -0.34 5.29 16 40 H 0.20 1.13 8.06 -52.48 -0.42 0.70 16 41 H 0.11 0.09 8.08 -51.93 -0.42 -0.33 16 42 H 0.10 0.30 8.10 -51.93 -0.42 -0.12 16 43 H 0.08 0.11 7.86 -51.93 -0.41 -0.30 16 44 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 45 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 46 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.10 0.97 7.30 -51.93 -0.38 0.59 16 48 H 0.07 0.49 8.02 -51.93 -0.42 0.07 16 LS Contribution 400.20 15.07 6.03 6.03 Total: -1.00 -36.13 400.20 -7.04 -43.17 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -7.69 Total: 7.18 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -1.06 Total: 1.01 kcal Atomic # 7 Polarization: -63.99 SS G_CDS: 1.02 Total: -62.97 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: -0.32 Total: -12.40 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.98 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.13 -7.04 -43.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668259613.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.904 kcal (2) G-P(sol) polarization free energy of solvation -36.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds