Wall clock time and date at job start Tue Mar 31 2020 19:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.47160 * 2 1 4 4 C 1.53001 * 109.47151 * 240.00232 * 2 1 3 5 5 C 1.52996 * 109.47129 * 174.99953 * 4 2 1 6 6 N 1.46495 * 109.47338 * 179.97438 * 5 4 2 7 7 C 1.36941 * 120.00455 * 179.97438 * 6 5 4 8 8 H 1.07994 * 119.99714 * 0.02562 * 7 6 5 9 9 C 1.38813 * 120.00073 * 180.02562 * 7 6 5 10 10 N 1.31616 * 120.00110 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 119.99836 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47291 * 59.99626 * 11 9 7 13 13 H 1.48500 * 109.47207 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47315 * 300.00005 * 11 9 7 15 15 N 1.46494 * 109.47202 * 119.99811 * 2 1 3 16 16 C 1.34781 * 120.00111 * 274.99999 * 15 2 1 17 17 O 1.21591 * 119.99992 * 359.97438 * 16 15 2 18 18 C 1.47524 * 119.99733 * 180.02562 * 16 15 2 19 19 C 1.36592 * 125.77018 * 180.30856 * 18 16 15 20 20 N 1.34810 * 106.84377 * 180.17781 * 19 18 16 21 21 C 1.46502 * 126.59661 * 179.84770 * 20 19 18 22 22 C 1.53005 * 109.46915 * 124.71067 * 21 20 19 23 23 H 1.08997 * 110.81024 * 302.82768 * 22 21 20 24 24 C 1.54806 * 110.93853 * 179.17271 * 22 21 20 25 25 C 1.54099 * 104.19470 * 220.91054 * 24 22 21 26 26 O 1.43889 * 107.37252 * 358.10337 * 25 24 22 27 27 C 1.44388 * 106.89814 * 26.27302 * 26 25 24 28 28 N 1.40208 * 106.80588 * 359.58525 * 20 19 18 29 29 N 1.28758 * 108.36903 * 0.26570 * 28 20 19 30 30 H 1.08997 * 109.47340 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47173 * 300.00127 * 1 2 3 32 32 H 1.09003 * 109.47536 * 60.00092 * 1 2 3 33 33 H 1.09003 * 109.46957 * 294.99797 * 4 2 1 34 34 H 1.08993 * 109.47310 * 54.99781 * 4 2 1 35 35 H 1.09003 * 109.47074 * 299.99773 * 5 4 2 36 36 H 1.09000 * 109.47312 * 59.99370 * 5 4 2 37 37 H 0.97003 * 119.99770 * 0.02562 * 6 5 4 38 38 H 0.97001 * 119.99953 * 179.97438 * 10 9 7 39 39 H 0.97003 * 119.99756 * 95.00442 * 15 2 1 40 40 H 1.08005 * 126.58183 * 0.03316 * 19 18 16 41 41 H 1.08995 * 109.46934 * 4.71620 * 21 20 19 42 42 H 1.08997 * 109.47047 * 244.70844 * 21 20 19 43 43 H 1.09002 * 110.48575 * 339.59172 * 24 22 21 44 44 H 1.09004 * 110.48517 * 102.10161 * 24 22 21 45 45 H 1.09001 * 109.87936 * 117.39322 * 25 24 22 46 46 H 1.08993 * 109.88056 * 238.39954 * 25 24 22 47 47 H 1.09002 * 110.61854 * 201.57804 * 27 26 25 48 48 H 1.09000 * 110.62045 * 78.73713 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5647 -0.6132 -1.3137 6 7 4.0532 -1.3043 -2.5095 7 6 5.3952 -1.3403 -2.7795 8 1 6.0936 -0.8596 -2.1106 9 6 5.8579 -1.9947 -3.9129 10 7 5.0068 -2.5809 -4.7279 11 14 7.6886 -2.0443 -4.2807 12 1 8.4000 -2.7156 -3.1633 13 1 7.9205 -2.7986 -5.5387 14 1 8.2009 -0.6588 -4.4322 15 7 2.0183 -0.6905 1.1961 16 6 2.1470 -0.0181 2.3571 17 8 1.8583 1.1617 2.4116 18 6 2.6393 -0.7135 3.5615 19 6 2.8089 -0.1513 4.7947 20 7 3.2764 -1.1217 5.6054 21 6 3.6113 -0.9875 7.0253 22 6 2.8315 -2.0265 7.8336 23 1 1.7591 -1.9175 7.6721 24 6 3.1762 -1.9283 9.3396 25 6 3.2752 -3.3952 9.8011 26 8 2.9656 -4.2243 8.6665 27 6 3.3000 -3.4626 7.4864 28 7 3.3747 -2.2855 4.8298 29 7 2.9917 -2.0085 3.6321 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.7516 -1.7715 -1.2056 34 1 1.6053 -0.2617 -2.1369 35 1 3.8531 0.4371 -1.3574 36 1 3.9994 -1.0727 -0.4260 37 1 3.4258 -1.7357 -3.1106 38 1 5.3301 -3.0379 -5.5201 39 1 2.2490 -1.6317 1.1525 40 1 2.6092 0.8745 5.0675 41 1 3.3466 0.0128 7.3681 42 1 4.6806 -1.1477 7.1631 43 1 4.1296 -1.4189 9.4803 44 1 2.3840 -1.4092 9.8792 45 1 4.2869 -3.6075 10.1468 46 1 2.5626 -3.5798 10.6049 47 1 2.7610 -3.8429 6.6186 48 1 4.3752 -3.4831 7.3082 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001668259613.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:38 Heat of formation + Delta-G solvation = -8.743370 kcal Electronic energy + Delta-G solvation = -28456.639139 eV Core-core repulsion = 24354.787537 eV Total energy + Delta-G solvation = -4101.851602 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.26234 -40.69144 -40.35373 -37.84059 -36.34496 -36.08745 -33.68224 -33.31825 -32.49676 -31.47242 -30.27777 -29.39313 -27.60523 -25.94995 -25.00105 -23.91999 -23.23991 -22.92772 -22.12418 -21.71961 -21.25391 -19.43390 -18.99225 -17.72419 -17.42884 -17.21656 -16.97677 -16.68015 -16.53143 -16.14391 -15.77660 -15.60448 -15.48753 -15.40341 -15.12595 -15.00797 -14.74124 -14.24874 -14.11974 -13.77470 -13.53528 -13.21902 -13.09250 -12.88057 -12.86739 -12.74229 -12.48825 -12.37879 -12.35777 -12.30407 -12.00515 -11.96214 -11.91249 -11.73848 -11.63399 -11.31678 -11.18605 -10.94081 -10.70382 -10.40289 -10.02393 -9.01120 -7.96179 -5.25244 0.14760 0.62622 1.07172 1.45623 1.49149 1.55369 2.15592 2.26661 2.54941 2.87723 3.19268 3.32716 3.36741 3.48028 3.61065 3.64072 3.82561 3.93473 3.98517 4.07791 4.10119 4.17794 4.20875 4.33038 4.39629 4.41524 4.50135 4.57907 4.65865 4.69754 4.78260 4.80358 4.84406 4.87498 4.89178 4.98895 5.01722 5.14089 5.22777 5.28616 5.35340 5.44387 5.47042 5.54963 5.87349 6.26173 6.44035 6.90688 7.14877 7.32432 8.07885 8.32429 9.26881 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012148 B = 0.002130 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2304.377923 B =13144.939874 C =14675.609965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.152 3.848 3 H 0.079 0.921 4 C -0.120 4.120 5 C 0.154 3.846 6 N -0.745 5.745 7 C -0.250 4.250 8 H 0.070 0.930 9 C -0.075 4.075 10 N -0.967 5.967 11 Si 0.974 3.026 12 H -0.279 1.279 13 H -0.292 1.292 14 H -0.277 1.277 15 N -0.704 5.704 16 C 0.605 3.395 17 O -0.567 6.567 18 C -0.127 4.127 19 C 0.115 3.885 20 N -0.350 5.350 21 C 0.123 3.877 22 C -0.130 4.130 23 H 0.088 0.912 24 C -0.135 4.135 25 C 0.033 3.967 26 O -0.411 6.411 27 C 0.052 3.948 28 N -0.086 5.086 29 N -0.229 5.229 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.012 0.988 36 H 0.016 0.984 37 H 0.376 0.624 38 H 0.252 0.748 39 H 0.410 0.590 40 H 0.242 0.758 41 H 0.155 0.845 42 H 0.118 0.882 43 H 0.106 0.894 44 H 0.102 0.898 45 H 0.067 0.933 46 H 0.092 0.908 47 H 0.077 0.923 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.999 6.413 33.432 34.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.048 3.952 3 H 0.098 0.902 4 C -0.158 4.158 5 C 0.027 3.973 6 N -0.388 5.388 7 C -0.381 4.381 8 H 0.088 0.912 9 C -0.267 4.267 10 N -0.617 5.617 11 Si 0.803 3.197 12 H -0.206 1.206 13 H -0.218 1.218 14 H -0.203 1.203 15 N -0.354 5.354 16 C 0.390 3.610 17 O -0.446 6.446 18 C -0.267 4.267 19 C -0.042 4.042 20 N -0.135 5.135 21 C 0.004 3.996 22 C -0.150 4.150 23 H 0.106 0.894 24 C -0.173 4.173 25 C -0.043 4.043 26 O -0.331 6.331 27 C -0.025 4.025 28 N -0.066 5.066 29 N -0.102 5.102 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.105 0.895 35 H 0.030 0.970 36 H 0.034 0.966 37 H 0.208 0.792 38 H 0.061 0.939 39 H 0.246 0.754 40 H 0.258 0.742 41 H 0.173 0.827 42 H 0.136 0.864 43 H 0.125 0.875 44 H 0.120 0.880 45 H 0.086 0.914 46 H 0.110 0.890 47 H 0.096 0.904 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.709 5.585 33.541 34.866 hybrid contribution 0.767 0.127 -0.823 1.132 sum -6.943 5.712 32.718 33.931 Atomic orbital electron populations 1.22087 0.93255 1.02843 1.02882 1.20931 0.95102 0.96591 0.82614 0.90239 1.21914 0.94569 1.01635 0.97690 1.20753 0.93575 0.94317 0.88605 1.42543 1.04487 1.65318 1.26443 1.19560 0.85315 1.27883 1.05390 0.91207 1.25584 1.02176 1.01157 0.97824 1.69800 1.34662 1.41734 1.15512 0.85205 0.79951 0.77664 0.76905 1.20555 1.21756 1.20347 1.45975 1.65589 1.14730 1.09106 1.16941 0.76681 0.85310 0.82047 1.90763 1.52936 1.15606 1.85286 1.21525 1.16531 0.91810 0.96830 1.23879 0.93777 0.97772 0.88822 1.50789 1.43064 1.07598 1.12041 1.22555 1.02410 1.03404 0.71195 1.22979 1.01190 0.94369 0.96419 0.89396 1.22927 1.05251 0.96904 0.92186 1.23439 1.01729 0.89869 0.89291 1.88924 1.86692 1.41348 1.16095 1.23656 1.00260 0.90338 0.88231 1.81909 1.22633 1.06031 0.96061 1.74666 1.08908 1.13960 1.12681 0.91672 0.92573 0.90041 0.90834 0.89512 0.97009 0.96622 0.79215 0.93882 0.75446 0.74231 0.82690 0.86375 0.87533 0.87981 0.91448 0.88980 0.90437 0.91626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 9.48 71.98 0.68 -2.74 16 2 C 0.15 4.17 2.57 44.99 0.12 4.29 16 3 H 0.08 2.38 7.58 -2.38 -0.02 2.37 16 4 C -0.12 -3.79 4.87 30.59 0.15 -3.65 16 5 C 0.15 6.44 6.15 86.38 0.53 6.97 16 6 N -0.75 -39.34 5.60 -343.47 -1.92 -41.26 16 7 C -0.25 -14.56 9.99 84.03 0.84 -13.72 16 8 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 9 C -0.07 -4.44 5.50 84.86 0.47 -3.97 16 10 N -0.97 -60.24 13.06 21.65 0.28 -59.96 16 11 Si 0.97 47.40 29.55 68.60 2.03 49.43 16 12 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 13 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 14 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 15 N -0.70 -19.63 4.53 -445.72 -2.02 -21.65 16 16 C 0.60 16.99 7.78 86.69 0.67 17.66 16 17 O -0.57 -17.72 16.53 -4.00 -0.07 -17.79 16 18 C -0.13 -3.09 6.99 40.82 0.29 -2.80 16 19 C 0.12 1.77 11.27 83.85 0.95 2.72 16 20 N -0.35 -4.92 3.69 -347.10 -1.28 -6.21 16 21 C 0.12 0.52 5.93 86.38 0.51 1.03 16 22 C -0.13 -0.95 3.37 -9.49 -0.03 -0.98 16 23 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 24 C -0.13 -0.36 6.60 31.58 0.21 -0.15 16 25 C 0.03 0.29 7.70 72.35 0.56 0.85 16 26 O -0.41 -7.45 11.54 -148.98 -1.72 -9.17 16 27 C 0.05 0.79 6.09 72.67 0.44 1.23 16 28 N -0.09 -2.00 11.79 37.02 0.44 -1.56 16 29 N -0.23 -6.25 12.04 -50.00 -0.60 -6.85 16 30 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 35 H 0.01 0.51 8.14 -2.39 -0.02 0.50 16 36 H 0.02 0.68 7.75 -2.39 -0.02 0.66 16 37 H 0.38 20.69 7.67 -92.71 -0.71 19.98 16 38 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 39 H 0.41 11.49 8.29 -92.71 -0.77 10.72 16 40 H 0.24 1.70 8.06 -2.91 -0.02 1.68 16 41 H 0.16 -0.60 8.08 -2.39 -0.02 -0.62 16 42 H 0.12 0.25 8.10 -2.39 -0.02 0.23 16 43 H 0.11 -0.19 7.86 -2.39 -0.02 -0.21 16 44 H 0.10 -0.02 8.14 -2.39 -0.02 -0.04 16 45 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 46 H 0.09 0.63 8.14 -2.39 -0.02 0.62 16 47 H 0.08 1.56 7.30 -2.39 -0.02 1.54 16 48 H 0.07 0.96 8.02 -2.39 -0.02 0.94 16 Total: -1.00 -80.32 400.20 1.01 -79.31 By element: Atomic # 1 Polarization: 29.47 SS G_CDS: -0.50 Total: 28.97 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: 6.38 Total: 6.74 kcal Atomic # 7 Polarization: -132.38 SS G_CDS: -5.11 Total: -137.49 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -1.78 Total: -26.96 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.43 kcal Total: -80.32 1.01 -79.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668259613.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.566 kcal (2) G-P(sol) polarization free energy of solvation -80.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds