Wall clock time and date at job start Tue Mar 31 2020 19:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 5 5 C 1.52997 * 109.47448 * 184.99813 * 4 2 1 6 6 N 1.46500 * 109.47442 * 179.97438 * 5 4 2 7 7 C 1.36939 * 120.00428 * 180.02562 * 6 5 4 8 8 H 1.08001 * 119.99713 * 359.97438 * 7 6 5 9 9 C 1.38813 * 120.00209 * 180.02562 * 7 6 5 10 10 N 1.31615 * 120.00227 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 120.00002 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.47137 * 90.00282 * 11 9 7 13 13 H 1.48498 * 109.47523 * 210.00151 * 11 9 7 14 14 H 1.48502 * 109.47313 * 330.00624 * 11 9 7 15 15 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 16 16 C 1.34777 * 120.00033 * 84.99600 * 15 2 1 17 17 O 1.21592 * 119.99951 * 0.02562 * 16 15 2 18 18 C 1.47516 * 120.00037 * 180.02562 * 16 15 2 19 19 C 1.36602 * 125.77259 * 180.02562 * 18 16 15 20 20 N 1.34813 * 106.84154 * 179.97438 * 19 18 16 21 21 C 1.46498 * 126.59702 * 180.02562 * 20 19 18 22 22 C 1.52997 * 109.47618 * 124.99063 * 21 20 19 23 23 H 1.09001 * 110.45513 * 52.39689 * 22 21 20 24 24 C 1.54503 * 110.51329 * 175.00145 * 22 21 20 25 25 C 1.54473 * 104.06479 * 118.64644 * 24 22 21 26 26 O 1.44423 * 104.80267 * 23.98039 * 25 24 22 27 27 C 1.44430 * 105.27699 * 319.48766 * 26 25 24 28 28 N 1.40210 * 106.80918 * 359.97438 * 20 19 18 29 29 N 1.28760 * 108.36787 * 359.75165 * 28 20 19 30 30 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 33 33 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 34 34 H 1.09004 * 109.47313 * 64.99993 * 4 2 1 35 35 H 1.09000 * 109.47346 * 300.00002 * 5 4 2 36 36 H 1.09007 * 109.46964 * 60.00529 * 5 4 2 37 37 H 0.97002 * 119.99959 * 0.02562 * 6 5 4 38 38 H 0.96993 * 120.00316 * 179.97438 * 10 9 7 39 39 H 0.96992 * 120.00062 * 265.00053 * 15 2 1 40 40 H 1.07999 * 126.57889 * 359.97438 * 19 18 16 41 41 H 1.09000 * 109.46779 * 244.99869 * 21 20 19 42 42 H 1.09005 * 109.46660 * 4.98941 * 21 20 19 43 43 H 1.09003 * 110.51188 * 237.29298 * 24 22 21 44 44 H 1.09001 * 110.51099 * 359.97438 * 24 22 21 45 45 H 1.09002 * 110.37418 * 142.80670 * 25 24 22 46 46 H 1.09001 * 110.37609 * 265.14570 * 25 24 22 47 47 H 1.09000 * 110.36984 * 281.68114 * 27 26 25 48 48 H 1.09000 * 110.37522 * 159.34216 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 3.5648 -0.6133 1.3135 6 7 4.0532 -1.3034 2.5100 7 6 5.3952 -1.3393 2.7800 8 1 6.0937 -0.8591 2.1107 9 6 5.8580 -1.9936 3.9134 10 7 7.1479 -2.0285 4.1727 11 14 4.6499 -2.8247 5.0707 12 1 4.4450 -4.2325 4.6448 13 1 5.1916 -2.7997 6.4532 14 1 3.3527 -2.1027 5.0342 15 7 2.0184 -0.6906 -1.1962 16 6 2.1470 -0.0182 -2.3572 17 8 1.8582 1.1617 -2.4116 18 6 2.6383 -0.7136 -3.5618 19 6 2.8137 -0.1498 -4.7936 20 7 3.2746 -1.1219 -5.6061 21 6 3.6098 -0.9877 -7.0259 22 6 5.0481 -1.4554 -7.2569 23 1 5.1960 -2.4521 -6.8410 24 6 5.3862 -1.4422 -8.7644 25 6 6.5512 -0.4343 -8.8790 26 8 7.1548 -0.4173 -7.5671 27 6 6.0488 -0.4540 -6.6388 28 7 3.3725 -2.2859 -4.8306 29 7 2.9952 -2.0075 -3.6314 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.6054 -0.2618 2.1369 34 1 1.7517 -1.7715 1.2055 35 1 3.9995 -1.0728 0.4258 36 1 3.8532 0.4370 1.3573 37 1 3.4259 -1.7350 3.1110 38 1 7.4712 -2.4854 4.9648 39 1 2.2491 -1.6316 -1.1527 40 1 2.6203 0.8776 -5.0647 41 1 2.9293 -1.5984 -7.6191 42 1 3.5149 0.0564 -7.3244 43 1 5.7035 -2.4317 -9.0934 44 1 4.5285 -1.1028 -9.3452 45 1 7.2722 -0.7708 -9.6240 46 1 6.1730 0.5553 -9.1356 47 1 5.5936 0.5326 -6.5519 48 1 6.3839 -0.8056 -5.6630 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001668259614.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:40 Heat of formation + Delta-G solvation = -6.850192 kcal Electronic energy + Delta-G solvation = -28618.399181 eV Core-core repulsion = 24516.629673 eV Total energy + Delta-G solvation = -4101.769508 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.26842 -40.71493 -40.41357 -37.92691 -36.34642 -36.18451 -33.80986 -33.35961 -32.64550 -31.50499 -30.32784 -29.69972 -27.57883 -25.80808 -24.91753 -24.14475 -23.15556 -23.05230 -22.21527 -21.66873 -21.09633 -19.76955 -19.15111 -17.74414 -17.44656 -17.30938 -16.90846 -16.61245 -16.50789 -16.31732 -15.98325 -15.71229 -15.61981 -15.41541 -15.02655 -14.89229 -14.74965 -14.29742 -14.04358 -13.84225 -13.75573 -13.31671 -13.11144 -12.98361 -12.96460 -12.91664 -12.44217 -12.40186 -12.33301 -12.21639 -12.16742 -12.00141 -11.81905 -11.74259 -11.61478 -11.29123 -11.19684 -10.98656 -10.84831 -10.41210 -10.03177 -9.32028 -8.04155 -5.38927 0.14028 0.62176 1.07088 1.37847 1.43204 1.50473 2.14709 2.26433 2.48467 2.89737 3.17310 3.25321 3.26884 3.43893 3.48245 3.72907 3.73820 3.91900 3.96277 4.02882 4.06198 4.11402 4.18149 4.26794 4.29744 4.37717 4.50702 4.55799 4.62552 4.65936 4.69148 4.76202 4.80267 4.87186 4.89063 5.00233 5.01851 5.11087 5.19891 5.25574 5.35240 5.43801 5.54289 5.72781 5.77396 6.19551 6.43168 6.90025 7.06413 7.14556 7.81046 8.02936 9.17688 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011270 B = 0.002348 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.887780 B =11920.502206 C =13705.458808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.150 3.850 3 H 0.078 0.922 4 C -0.124 4.124 5 C 0.155 3.845 6 N -0.757 5.757 7 C -0.241 4.241 8 H 0.048 0.952 9 C -0.068 4.068 10 N -0.986 5.986 11 Si 0.964 3.036 12 H -0.276 1.276 13 H -0.295 1.295 14 H -0.245 1.245 15 N -0.705 5.705 16 C 0.605 3.395 17 O -0.567 6.567 18 C -0.127 4.127 19 C 0.112 3.888 20 N -0.348 5.348 21 C 0.124 3.876 22 C -0.133 4.133 23 H 0.081 0.919 24 C -0.136 4.136 25 C 0.033 3.967 26 O -0.406 6.406 27 C 0.045 3.955 28 N -0.087 5.087 29 N -0.228 5.228 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.018 0.982 36 H 0.014 0.986 37 H 0.369 0.631 38 H 0.259 0.741 39 H 0.411 0.589 40 H 0.240 0.760 41 H 0.129 0.871 42 H 0.147 0.853 43 H 0.084 0.916 44 H 0.117 0.883 45 H 0.100 0.900 46 H 0.080 0.920 47 H 0.078 0.922 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.568 4.207 -31.485 35.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.045 3.955 3 H 0.096 0.904 4 C -0.162 4.162 5 C 0.029 3.971 6 N -0.403 5.403 7 C -0.372 4.372 8 H 0.066 0.934 9 C -0.259 4.259 10 N -0.636 5.636 11 Si 0.790 3.210 12 H -0.202 1.202 13 H -0.221 1.221 14 H -0.169 1.169 15 N -0.355 5.355 16 C 0.390 3.610 17 O -0.446 6.446 18 C -0.267 4.267 19 C -0.046 4.046 20 N -0.133 5.133 21 C 0.005 3.995 22 C -0.153 4.153 23 H 0.099 0.901 24 C -0.174 4.174 25 C -0.043 4.043 26 O -0.326 6.326 27 C -0.032 4.032 28 N -0.067 5.067 29 N -0.101 5.101 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.113 0.887 34 H 0.101 0.899 35 H 0.036 0.964 36 H 0.032 0.968 37 H 0.203 0.797 38 H 0.068 0.932 39 H 0.246 0.754 40 H 0.256 0.744 41 H 0.147 0.853 42 H 0.165 0.835 43 H 0.103 0.897 44 H 0.135 0.865 45 H 0.118 0.882 46 H 0.098 0.902 47 H 0.096 0.904 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.944 3.615 -31.554 35.100 hybrid contribution 0.101 -0.098 1.006 1.016 sum -14.842 3.516 -30.548 34.145 Atomic orbital electron populations 1.22086 0.93000 1.02994 1.02918 1.20960 0.95271 0.96637 0.82622 0.90409 1.21994 0.93905 1.02292 0.98055 1.20753 0.93847 0.94474 0.88061 1.42669 1.03473 1.66742 1.27424 1.19015 0.83980 1.28221 1.05941 0.93420 1.25637 0.97785 1.02005 1.00483 1.69906 1.14403 1.49840 1.29491 0.85286 0.79302 0.78843 0.77601 1.20214 1.22141 1.16947 1.45971 1.65647 1.14762 1.09099 1.16931 0.76682 0.85302 0.82103 1.90767 1.52875 1.15616 1.85306 1.21541 1.16401 0.91878 0.96831 1.23871 0.94267 0.97640 0.88866 1.50785 1.42967 1.07357 1.12168 1.22666 0.96366 1.07241 0.73244 1.22818 0.93510 1.00595 0.98340 0.90095 1.22935 1.00018 1.01409 0.92991 1.23731 0.95858 0.99866 0.84874 1.89167 1.30366 1.95524 1.17533 1.23539 0.87444 0.99013 0.93227 1.81921 1.22577 1.06101 0.96088 1.74656 1.08866 1.14013 1.12605 0.89859 0.91384 0.92787 0.88676 0.89897 0.96359 0.96752 0.79728 0.93239 0.75356 0.74409 0.85292 0.83493 0.89745 0.86454 0.88210 0.90204 0.90420 0.91858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 9.48 71.98 0.68 -2.34 16 2 C 0.15 3.77 2.57 44.99 0.12 3.89 16 3 H 0.08 2.21 7.58 -2.39 -0.02 2.19 16 4 C -0.12 -3.45 4.87 30.59 0.15 -3.30 16 5 C 0.15 6.13 6.15 86.38 0.53 6.66 16 6 N -0.76 -36.61 5.41 -343.44 -1.86 -38.47 16 7 C -0.24 -14.44 10.47 84.03 0.88 -13.56 16 8 H 0.05 3.18 8.06 -2.91 -0.02 3.16 16 9 C -0.07 -4.14 5.50 84.86 0.47 -3.68 16 10 N -0.99 -65.34 13.97 21.65 0.30 -65.04 16 11 Si 0.96 46.20 27.73 68.60 1.90 48.10 16 12 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 13 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 14 H -0.25 -10.38 6.52 99.48 0.65 -9.73 16 15 N -0.70 -18.64 4.53 -445.72 -2.02 -20.66 16 16 C 0.60 16.65 7.78 86.69 0.67 17.32 16 17 O -0.57 -17.50 16.53 -4.01 -0.07 -17.56 16 18 C -0.13 -3.06 6.99 40.82 0.29 -2.77 16 19 C 0.11 1.74 11.27 83.85 0.95 2.69 16 20 N -0.35 -4.96 3.58 -347.10 -1.24 -6.20 16 21 C 0.12 0.56 5.69 86.38 0.49 1.05 16 22 C -0.13 -1.20 3.24 -9.78 -0.03 -1.23 16 23 H 0.08 1.15 8.06 -2.39 -0.02 1.13 16 24 C -0.14 -0.55 6.74 31.61 0.21 -0.34 16 25 C 0.03 0.26 7.63 72.48 0.55 0.82 16 26 O -0.41 -7.36 11.65 -148.98 -1.74 -9.10 16 27 C 0.04 0.65 7.08 72.49 0.51 1.17 16 28 N -0.09 -2.03 13.57 37.02 0.50 -1.53 16 29 N -0.23 -6.19 12.04 -50.00 -0.60 -6.79 16 30 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.02 0.77 7.75 -2.39 -0.02 0.75 16 36 H 0.01 0.61 8.14 -2.38 -0.02 0.59 16 37 H 0.37 16.49 5.53 -92.71 -0.51 15.98 16 38 H 0.26 16.22 8.31 -92.71 -0.77 15.45 16 39 H 0.41 10.75 8.29 -92.71 -0.77 9.98 16 40 H 0.24 1.81 8.06 -2.91 -0.02 1.79 16 41 H 0.13 0.07 8.14 -2.39 -0.02 0.05 16 42 H 0.15 -0.40 7.90 -2.38 -0.02 -0.42 16 43 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 44 H 0.12 -0.29 7.73 -2.39 -0.02 -0.31 16 45 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 46 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 47 H 0.08 0.83 7.74 -2.39 -0.02 0.82 16 48 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -85.62 399.79 1.29 -84.32 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: -0.36 Total: 26.56 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: 6.47 Total: 6.37 kcal Atomic # 7 Polarization: -133.78 SS G_CDS: -4.91 Total: -138.69 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -1.80 Total: -26.66 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 1.90 Total: 48.10 kcal Total: -85.62 1.29 -84.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668259614.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.474 kcal (2) G-P(sol) polarization free energy of solvation -85.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds