Wall clock time and date at job start Tue Mar 31 2020 19:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 5 5 C 1.52997 * 109.47448 * 184.99813 * 4 2 1 6 6 N 1.46500 * 109.47442 * 179.97438 * 5 4 2 7 7 C 1.36939 * 120.00428 * 180.02562 * 6 5 4 8 8 H 1.08001 * 119.99713 * 359.97438 * 7 6 5 9 9 C 1.38813 * 120.00209 * 180.02562 * 7 6 5 10 10 N 1.31615 * 120.00227 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 120.00002 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.47137 * 90.00282 * 11 9 7 13 13 H 1.48498 * 109.47523 * 210.00151 * 11 9 7 14 14 H 1.48502 * 109.47313 * 330.00624 * 11 9 7 15 15 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 16 16 C 1.34777 * 120.00033 * 84.99600 * 15 2 1 17 17 O 1.21592 * 119.99951 * 0.02562 * 16 15 2 18 18 C 1.47516 * 120.00037 * 180.02562 * 16 15 2 19 19 C 1.36596 * 125.77080 * 179.71633 * 18 16 15 20 20 N 1.34820 * 106.83862 * 179.89601 * 19 18 16 21 21 C 1.46506 * 126.59113 * 180.15060 * 20 19 18 22 22 C 1.52999 * 109.46939 * 125.27652 * 21 20 19 23 23 H 1.09003 * 110.43150 * 305.69708 * 22 21 20 24 24 C 1.54810 * 110.48847 * 183.15493 * 22 21 20 25 25 C 1.55225 * 101.98891 * 220.51853 * 24 22 21 26 26 O 1.44388 * 103.56663 * 36.87460 * 25 24 22 27 27 C 1.43745 * 106.97612 * 320.01803 * 26 25 24 28 28 N 1.40210 * 106.80930 * 0.36023 * 20 19 18 29 29 N 1.28754 * 108.36738 * 359.76950 * 28 20 19 30 30 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 33 33 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 34 34 H 1.09004 * 109.47313 * 64.99993 * 4 2 1 35 35 H 1.09000 * 109.47346 * 300.00002 * 5 4 2 36 36 H 1.09007 * 109.46964 * 60.00529 * 5 4 2 37 37 H 0.97002 * 119.99959 * 0.02562 * 6 5 4 38 38 H 0.96993 * 120.00316 * 179.97438 * 10 9 7 39 39 H 0.96992 * 120.00062 * 265.00053 * 15 2 1 40 40 H 1.08001 * 126.58365 * 0.04097 * 19 18 16 41 41 H 1.09002 * 109.46700 * 245.27394 * 21 20 19 42 42 H 1.08996 * 109.47158 * 5.27168 * 21 20 19 43 43 H 1.08997 * 110.90516 * 338.63813 * 24 22 21 44 44 H 1.08999 * 110.90668 * 102.24336 * 24 22 21 45 45 H 1.09001 * 110.51644 * 278.38674 * 25 24 22 46 46 H 1.08995 * 110.78381 * 155.49739 * 25 24 22 47 47 H 1.09000 * 109.87355 * 267.08694 * 27 26 25 48 48 H 1.08994 * 110.00335 * 146.00614 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 3.5648 -0.6133 1.3135 6 7 4.0532 -1.3034 2.5100 7 6 5.3952 -1.3393 2.7800 8 1 6.0937 -0.8591 2.1107 9 6 5.8580 -1.9936 3.9134 10 7 7.1479 -2.0285 4.1727 11 14 4.6499 -2.8247 5.0707 12 1 4.4450 -4.2325 4.6448 13 1 5.1916 -2.7997 6.4532 14 1 3.3527 -2.1027 5.0342 15 7 2.0184 -0.6906 -1.1962 16 6 2.1470 -0.0182 -2.3572 17 8 1.8582 1.1617 -2.4116 18 6 2.6383 -0.7136 -3.5618 19 6 2.8081 -0.1513 -4.7950 20 7 3.2728 -1.1224 -5.6065 21 6 3.6069 -0.9883 -7.0266 22 6 5.0448 -1.4568 -7.2587 23 1 5.7296 -0.9246 -6.5985 24 6 5.4494 -1.2512 -8.7388 25 6 6.2495 -2.5475 -9.0374 26 8 5.5375 -3.5629 -8.2979 27 6 5.1582 -2.9781 -7.0407 28 7 3.3704 -2.2865 -4.8311 29 7 2.9889 -2.0091 -3.6330 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.6054 -0.2618 2.1369 34 1 1.7517 -1.7715 1.2055 35 1 3.9995 -1.0728 0.4258 36 1 3.8532 0.4370 1.3573 37 1 3.4259 -1.7350 3.1110 38 1 7.4712 -2.4854 4.9648 39 1 2.2491 -1.6316 -1.1527 40 1 2.6104 0.8750 -5.0672 41 1 2.9256 -1.5989 -7.6193 42 1 3.5122 0.0557 -7.3251 43 1 4.5684 -1.1826 -9.3769 44 1 6.0790 -0.3686 -8.8509 45 1 7.2736 -2.4562 -8.6754 46 1 6.2391 -2.7713 -10.1040 47 1 5.9192 -3.1891 -6.2893 48 1 4.1975 -3.3790 -6.7178 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001668259715.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:44 Heat of formation + Delta-G solvation = 23.925002 kcal Electronic energy + Delta-G solvation = -28572.209876 eV Core-core repulsion = 24471.774881 eV Total energy + Delta-G solvation = -4100.434996 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.49791 -39.98786 -39.52161 -36.59629 -35.71132 -34.46617 -32.79674 -32.04277 -31.31407 -30.62665 -29.68889 -28.23705 -27.06491 -24.46272 -23.61379 -23.33216 -22.41000 -21.48521 -21.27490 -20.86195 -20.35323 -18.40833 -17.50291 -17.10869 -16.80809 -16.39396 -16.27531 -15.99563 -15.41128 -15.01071 -14.93070 -14.45755 -14.37915 -14.12145 -14.02229 -13.69523 -13.59255 -13.28752 -13.23870 -12.58785 -12.54831 -12.51887 -12.23461 -12.01538 -11.95065 -11.80424 -11.49280 -11.46577 -11.39353 -11.17878 -10.86975 -10.70171 -10.67149 -10.47404 -10.14253 -10.10654 -10.08143 -9.55972 -9.54779 -9.01598 -8.83815 -7.18959 -5.72710 -3.08143 0.85364 1.55417 1.64188 3.11897 3.24547 3.40499 3.41877 3.43087 3.48112 3.69496 3.77387 3.94102 4.11802 4.37667 4.46948 4.49108 4.60465 4.62776 4.64569 4.70513 4.83942 4.93211 5.01535 5.15421 5.18687 5.19612 5.29174 5.29986 5.40328 5.50144 5.54745 5.61404 5.67358 5.68018 5.83677 5.96987 5.98029 6.00526 6.19560 6.25461 6.39045 6.50563 6.77216 6.80591 7.45355 7.76211 8.04016 8.17648 8.46277 9.25597 9.97822 10.17771 11.45895 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011220 B = 0.002307 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2494.872779 B =12131.772402 C =14004.878064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.146 3.854 3 H 0.092 0.908 4 C -0.140 4.140 5 C 0.157 3.843 6 N -0.757 5.757 7 C -0.242 4.242 8 H 0.089 0.911 9 C 0.002 3.998 10 N -0.935 5.935 11 Si 0.886 3.114 12 H -0.284 1.284 13 H -0.291 1.291 14 H -0.277 1.277 15 N -0.703 5.703 16 C 0.606 3.394 17 O -0.544 6.544 18 C -0.098 4.098 19 C 0.094 3.906 20 N -0.365 5.365 21 C 0.131 3.869 22 C -0.138 4.138 23 H 0.094 0.906 24 C -0.146 4.146 25 C 0.045 3.955 26 O -0.377 6.377 27 C 0.051 3.949 28 N -0.063 5.063 29 N -0.197 5.197 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.028 0.972 36 H 0.026 0.974 37 H 0.360 0.640 38 H 0.259 0.741 39 H 0.410 0.590 40 H 0.205 0.795 41 H 0.103 0.897 42 H 0.110 0.890 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.063 0.937 46 H 0.095 0.905 47 H 0.065 0.935 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.980 4.251 -29.361 31.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.110 0.890 4 C -0.178 4.178 5 C 0.030 3.970 6 N -0.403 5.403 7 C -0.372 4.372 8 H 0.107 0.893 9 C -0.193 4.193 10 N -0.584 5.584 11 Si 0.717 3.283 12 H -0.211 1.211 13 H -0.218 1.218 14 H -0.203 1.203 15 N -0.353 5.353 16 C 0.390 3.610 17 O -0.421 6.421 18 C -0.237 4.237 19 C -0.063 4.063 20 N -0.150 5.150 21 C 0.010 3.990 22 C -0.158 4.158 23 H 0.113 0.887 24 C -0.185 4.185 25 C -0.032 4.032 26 O -0.296 6.296 27 C -0.026 4.026 28 N -0.043 5.043 29 N -0.071 5.071 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.046 0.954 36 H 0.044 0.956 37 H 0.193 0.807 38 H 0.069 0.931 39 H 0.246 0.754 40 H 0.221 0.779 41 H 0.122 0.878 42 H 0.128 0.872 43 H 0.102 0.898 44 H 0.106 0.894 45 H 0.081 0.919 46 H 0.114 0.886 47 H 0.083 0.917 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.601 3.442 -29.487 31.523 hybrid contribution -0.696 0.247 0.896 1.161 sum -11.297 3.689 -28.591 30.963 Atomic orbital electron populations 1.22171 0.95239 1.02143 1.02407 1.21011 0.93690 0.97777 0.83376 0.88953 1.22121 0.98125 1.00976 0.96574 1.20628 0.90166 0.95974 0.90256 1.42710 1.05285 1.66327 1.25933 1.19066 0.82210 1.29226 1.06727 0.89323 1.24686 0.95630 1.00751 0.98277 1.69703 1.11738 1.48325 1.28599 0.86513 0.80918 0.79835 0.81056 1.21072 1.21775 1.20335 1.45918 1.65700 1.14748 1.08960 1.16716 0.77166 0.85516 0.81621 1.90794 1.51640 1.14807 1.84828 1.21528 1.14543 0.91607 0.96040 1.23377 0.96275 0.96593 0.90063 1.50550 1.44655 1.08710 1.11087 1.22156 0.97154 1.04408 0.75306 1.22916 0.95543 0.98703 0.98634 0.88731 1.23199 1.01490 0.99698 0.94080 1.23597 0.95582 0.86319 0.97654 1.88922 1.74807 1.36313 1.29519 1.23345 1.02362 0.90347 0.86514 1.81957 1.21891 1.04329 0.96149 1.74689 1.07776 1.13043 1.11615 0.91426 0.92441 0.92255 0.90153 0.91245 0.95365 0.95592 0.80709 0.93099 0.75412 0.77873 0.87848 0.87193 0.89802 0.89384 0.91918 0.88632 0.91663 0.88193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 9.48 37.16 0.35 -1.44 16 2 C 0.15 1.92 2.57 -67.93 -0.17 1.74 16 3 H 0.09 1.33 7.58 -51.93 -0.39 0.93 16 4 C -0.14 -2.06 4.87 -26.74 -0.13 -2.19 16 5 C 0.16 3.09 6.15 -4.04 -0.02 3.07 16 6 N -0.76 -18.44 5.41 -59.91 -0.32 -18.77 16 7 C -0.24 -7.08 10.47 -15.06 -0.16 -7.24 16 8 H 0.09 2.79 8.06 -52.49 -0.42 2.36 16 9 C 0.00 0.06 5.50 -17.43 -0.10 -0.03 16 10 N -0.94 -30.04 13.97 55.49 0.78 -29.27 16 11 Si 0.89 22.50 27.73 -169.99 -4.71 17.78 16 12 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 13 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 14 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 15 N -0.70 -9.36 4.53 -54.86 -0.25 -9.61 16 16 C 0.61 8.37 7.78 -12.48 -0.10 8.27 16 17 O -0.54 -8.51 16.53 5.28 0.09 -8.42 16 18 C -0.10 -1.20 6.99 -83.55 -0.58 -1.78 16 19 C 0.09 0.82 11.27 -16.83 -0.19 0.63 16 20 N -0.37 -2.98 3.69 -61.06 -0.23 -3.20 16 21 C 0.13 0.55 5.70 -4.04 -0.02 0.53 16 22 C -0.14 -0.72 3.27 -89.09 -0.29 -1.01 16 23 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 24 C -0.15 -0.49 6.73 -24.60 -0.17 -0.65 16 25 C 0.05 0.24 7.72 38.34 0.30 0.54 16 26 O -0.38 -3.41 11.52 -35.23 -0.41 -3.81 16 27 C 0.05 0.42 6.60 37.73 0.25 0.67 16 28 N -0.06 -0.74 11.63 60.35 0.70 -0.04 16 29 N -0.20 -2.63 12.04 32.84 0.40 -2.23 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.03 0.58 7.75 -51.93 -0.40 0.17 16 36 H 0.03 0.54 8.14 -51.92 -0.42 0.11 16 37 H 0.36 8.46 5.53 -40.82 -0.23 8.23 16 38 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 39 H 0.41 5.34 8.29 -40.82 -0.34 5.00 16 40 H 0.20 1.12 8.06 -52.49 -0.42 0.70 16 41 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.11 0.13 8.08 -51.93 -0.42 -0.29 16 43 H 0.08 0.18 7.87 -51.93 -0.41 -0.23 16 44 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 45 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 46 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.10 0.90 6.38 -51.93 -0.33 0.57 16 LS Contribution 396.50 15.07 5.98 5.98 Total: -1.00 -36.95 396.50 -6.63 -43.58 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -7.61 Total: 6.91 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -1.04 Total: 1.10 kcal Atomic # 7 Polarization: -64.19 SS G_CDS: 1.07 Total: -63.12 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: -0.32 Total: -12.23 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.71 Total: 17.78 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.95 -6.63 -43.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668259715.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.507 kcal (2) G-P(sol) polarization free energy of solvation -36.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds