Wall clock time and date at job start Tue Mar 31 2020 19:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 5 5 C 1.52997 * 109.47448 * 184.99813 * 4 2 1 6 6 N 1.46500 * 109.47442 * 179.97438 * 5 4 2 7 7 C 1.36939 * 120.00428 * 180.02562 * 6 5 4 8 8 H 1.08001 * 119.99713 * 359.97438 * 7 6 5 9 9 C 1.38813 * 120.00209 * 180.02562 * 7 6 5 10 10 N 1.31615 * 120.00227 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 120.00002 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.47137 * 90.00282 * 11 9 7 13 13 H 1.48498 * 109.47523 * 210.00151 * 11 9 7 14 14 H 1.48502 * 109.47313 * 330.00624 * 11 9 7 15 15 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 16 16 C 1.34777 * 120.00033 * 84.99600 * 15 2 1 17 17 O 1.21592 * 119.99951 * 0.02562 * 16 15 2 18 18 C 1.47516 * 120.00037 * 180.02562 * 16 15 2 19 19 C 1.36596 * 125.77080 * 179.71633 * 18 16 15 20 20 N 1.34820 * 106.83862 * 179.89601 * 19 18 16 21 21 C 1.46506 * 126.59113 * 180.15060 * 20 19 18 22 22 C 1.52999 * 109.46939 * 125.27652 * 21 20 19 23 23 H 1.09003 * 110.43150 * 305.69708 * 22 21 20 24 24 C 1.54810 * 110.48847 * 183.15493 * 22 21 20 25 25 C 1.55225 * 101.98891 * 220.51853 * 24 22 21 26 26 O 1.44388 * 103.56663 * 36.87460 * 25 24 22 27 27 C 1.43745 * 106.97612 * 320.01803 * 26 25 24 28 28 N 1.40210 * 106.80930 * 0.36023 * 20 19 18 29 29 N 1.28754 * 108.36738 * 359.76950 * 28 20 19 30 30 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 33 33 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 34 34 H 1.09004 * 109.47313 * 64.99993 * 4 2 1 35 35 H 1.09000 * 109.47346 * 300.00002 * 5 4 2 36 36 H 1.09007 * 109.46964 * 60.00529 * 5 4 2 37 37 H 0.97002 * 119.99959 * 0.02562 * 6 5 4 38 38 H 0.96993 * 120.00316 * 179.97438 * 10 9 7 39 39 H 0.96992 * 120.00062 * 265.00053 * 15 2 1 40 40 H 1.08001 * 126.58365 * 0.04097 * 19 18 16 41 41 H 1.09002 * 109.46700 * 245.27394 * 21 20 19 42 42 H 1.08996 * 109.47158 * 5.27168 * 21 20 19 43 43 H 1.08997 * 110.90516 * 338.63813 * 24 22 21 44 44 H 1.08999 * 110.90668 * 102.24336 * 24 22 21 45 45 H 1.09001 * 110.51644 * 278.38674 * 25 24 22 46 46 H 1.08995 * 110.78381 * 155.49739 * 25 24 22 47 47 H 1.09000 * 109.87355 * 267.08694 * 27 26 25 48 48 H 1.08994 * 110.00335 * 146.00614 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 3.5648 -0.6133 1.3135 6 7 4.0532 -1.3034 2.5100 7 6 5.3952 -1.3393 2.7800 8 1 6.0937 -0.8591 2.1107 9 6 5.8580 -1.9936 3.9134 10 7 7.1479 -2.0285 4.1727 11 14 4.6499 -2.8247 5.0707 12 1 4.4450 -4.2325 4.6448 13 1 5.1916 -2.7997 6.4532 14 1 3.3527 -2.1027 5.0342 15 7 2.0184 -0.6906 -1.1962 16 6 2.1470 -0.0182 -2.3572 17 8 1.8582 1.1617 -2.4116 18 6 2.6383 -0.7136 -3.5618 19 6 2.8081 -0.1513 -4.7950 20 7 3.2728 -1.1224 -5.6065 21 6 3.6069 -0.9883 -7.0266 22 6 5.0448 -1.4568 -7.2587 23 1 5.7296 -0.9246 -6.5985 24 6 5.4494 -1.2512 -8.7388 25 6 6.2495 -2.5475 -9.0374 26 8 5.5375 -3.5629 -8.2979 27 6 5.1582 -2.9781 -7.0407 28 7 3.3704 -2.2865 -4.8311 29 7 2.9889 -2.0091 -3.6330 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.6054 -0.2618 2.1369 34 1 1.7517 -1.7715 1.2055 35 1 3.9995 -1.0728 0.4258 36 1 3.8532 0.4370 1.3573 37 1 3.4259 -1.7350 3.1110 38 1 7.4712 -2.4854 4.9648 39 1 2.2491 -1.6316 -1.1527 40 1 2.6104 0.8750 -5.0672 41 1 2.9256 -1.5989 -7.6193 42 1 3.5122 0.0557 -7.3251 43 1 4.5684 -1.1826 -9.3769 44 1 6.0790 -0.3686 -8.8509 45 1 7.2736 -2.4562 -8.6754 46 1 6.2391 -2.7713 -10.1040 47 1 5.9192 -3.1891 -6.2893 48 1 4.1975 -3.3790 -6.7178 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001668259715.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:43 Heat of formation + Delta-G solvation = -4.995329 kcal Electronic energy + Delta-G solvation = -28573.463956 eV Core-core repulsion = 24471.774881 eV Total energy + Delta-G solvation = -4101.689075 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.27739 -40.71127 -40.37605 -37.92644 -36.33729 -36.18296 -33.80627 -33.34527 -32.65121 -31.56497 -30.29638 -29.69053 -27.63482 -25.82123 -24.93313 -23.95197 -23.16033 -22.94965 -22.16001 -21.74828 -21.27830 -19.77312 -19.08329 -17.63524 -17.46319 -17.31470 -17.12653 -16.71442 -16.58178 -16.04771 -15.93921 -15.77410 -15.58485 -15.42605 -15.02861 -14.76243 -14.63825 -14.30958 -14.18112 -13.87682 -13.73990 -13.31526 -13.16214 -12.97667 -12.93207 -12.72532 -12.50973 -12.38044 -12.36325 -12.21908 -12.00920 -11.99781 -11.83025 -11.81802 -11.74203 -11.31233 -11.19643 -10.98643 -10.70440 -10.41867 -10.03384 -9.31923 -8.04227 -5.38836 0.13831 0.61753 1.06193 1.37947 1.43113 1.50349 2.14760 2.26197 2.48406 2.94214 3.17619 3.23015 3.26905 3.39256 3.45615 3.67976 3.75779 3.91619 3.97092 4.02871 4.11319 4.15347 4.22445 4.27065 4.30632 4.45933 4.48320 4.55688 4.62416 4.67529 4.76242 4.77750 4.83156 4.87680 4.90240 4.96754 5.01817 5.10667 5.19948 5.25585 5.35161 5.42498 5.54270 5.72769 5.86950 6.19520 6.43137 6.89905 7.06409 7.14453 7.81195 8.02883 9.17564 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011220 B = 0.002307 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2494.872779 B =12131.772402 C =14004.878064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.150 3.850 3 H 0.078 0.922 4 C -0.125 4.125 5 C 0.155 3.845 6 N -0.757 5.757 7 C -0.240 4.240 8 H 0.048 0.952 9 C -0.068 4.068 10 N -0.986 5.986 11 Si 0.963 3.037 12 H -0.277 1.277 13 H -0.295 1.295 14 H -0.245 1.245 15 N -0.705 5.705 16 C 0.605 3.395 17 O -0.567 6.567 18 C -0.127 4.127 19 C 0.115 3.885 20 N -0.351 5.351 21 C 0.123 3.877 22 C -0.133 4.133 23 H 0.088 0.912 24 C -0.132 4.132 25 C 0.033 3.967 26 O -0.405 6.405 27 C 0.049 3.951 28 N -0.088 5.088 29 N -0.227 5.227 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.019 0.981 36 H 0.015 0.985 37 H 0.369 0.631 38 H 0.259 0.741 39 H 0.410 0.590 40 H 0.241 0.759 41 H 0.116 0.884 42 H 0.155 0.845 43 H 0.103 0.897 44 H 0.108 0.892 45 H 0.059 0.941 46 H 0.111 0.889 47 H 0.041 0.959 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.651 5.182 -30.694 33.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.045 3.955 3 H 0.096 0.904 4 C -0.163 4.163 5 C 0.029 3.971 6 N -0.403 5.403 7 C -0.371 4.371 8 H 0.066 0.934 9 C -0.259 4.259 10 N -0.636 5.636 11 Si 0.789 3.211 12 H -0.203 1.203 13 H -0.221 1.221 14 H -0.170 1.170 15 N -0.355 5.355 16 C 0.390 3.610 17 O -0.446 6.446 18 C -0.267 4.267 19 C -0.043 4.043 20 N -0.135 5.135 21 C 0.004 3.996 22 C -0.153 4.153 23 H 0.106 0.894 24 C -0.170 4.170 25 C -0.043 4.043 26 O -0.324 6.324 27 C -0.028 4.028 28 N -0.068 5.068 29 N -0.101 5.101 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.113 0.887 34 H 0.101 0.899 35 H 0.037 0.963 36 H 0.033 0.967 37 H 0.203 0.797 38 H 0.068 0.932 39 H 0.246 0.754 40 H 0.258 0.742 41 H 0.134 0.866 42 H 0.173 0.827 43 H 0.122 0.878 44 H 0.127 0.873 45 H 0.078 0.922 46 H 0.129 0.871 47 H 0.059 0.941 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -13.302 4.367 -30.873 33.899 hybrid contribution 0.270 -0.005 1.128 1.160 sum -13.032 4.361 -29.745 32.766 Atomic orbital electron populations 1.22088 0.93045 1.02973 1.02919 1.20958 0.95240 0.96654 0.82616 0.90355 1.21994 0.93948 1.02269 0.98051 1.20753 0.93814 0.94496 0.88061 1.42674 1.03484 1.66740 1.27425 1.19016 0.83976 1.28191 1.05926 0.93350 1.25626 0.97767 1.02015 1.00480 1.69902 1.14371 1.49849 1.29490 0.85296 0.79329 0.78839 0.77633 1.20264 1.22145 1.16967 1.45973 1.65646 1.14761 1.09109 1.16920 0.76665 0.85298 0.82085 1.90767 1.52874 1.15611 1.85300 1.21551 1.16539 0.91817 0.96827 1.23893 0.93993 0.97675 0.88732 1.50813 1.43043 1.07507 1.12166 1.22637 0.96451 1.07424 0.73065 1.22853 0.96308 0.96048 1.00056 0.89397 1.23187 1.02212 0.99115 0.92513 1.23868 0.95560 0.86818 0.98098 1.88889 1.75346 1.38278 1.29903 1.23277 1.00773 0.92793 0.85966 1.81893 1.22674 1.06073 0.96197 1.74657 1.08769 1.13970 1.12673 0.89848 0.91429 0.92794 0.88682 0.89945 0.96333 0.96700 0.79748 0.93248 0.75364 0.74239 0.86556 0.82745 0.87817 0.87326 0.92240 0.87094 0.94094 0.89500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 9.48 71.98 0.68 -2.34 16 2 C 0.15 3.76 2.57 44.99 0.12 3.87 16 3 H 0.08 2.21 7.58 -2.39 -0.02 2.19 16 4 C -0.12 -3.44 4.87 30.59 0.15 -3.29 16 5 C 0.15 6.09 6.15 86.38 0.53 6.62 16 6 N -0.76 -36.45 5.41 -343.44 -1.86 -38.30 16 7 C -0.24 -14.33 10.47 84.03 0.88 -13.45 16 8 H 0.05 3.20 8.06 -2.91 -0.02 3.18 16 9 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 10 N -0.99 -65.02 13.97 21.65 0.30 -64.72 16 11 Si 0.96 46.08 27.73 68.60 1.90 47.98 16 12 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 13 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 14 H -0.25 -10.37 6.52 99.48 0.65 -9.72 16 15 N -0.70 -18.57 4.53 -445.72 -2.02 -20.59 16 16 C 0.61 16.58 7.78 86.69 0.67 17.25 16 17 O -0.57 -17.39 16.53 -4.01 -0.07 -17.45 16 18 C -0.13 -3.07 6.99 40.81 0.29 -2.79 16 19 C 0.11 1.79 11.27 83.85 0.95 2.74 16 20 N -0.35 -5.14 3.69 -347.08 -1.28 -6.42 16 21 C 0.12 0.67 5.70 86.38 0.49 1.16 16 22 C -0.13 -1.17 3.27 -9.80 -0.03 -1.20 16 23 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 24 C -0.13 -0.51 6.73 31.98 0.22 -0.29 16 25 C 0.03 0.31 7.72 72.75 0.56 0.87 16 26 O -0.40 -7.42 11.52 -148.98 -1.72 -9.14 16 27 C 0.05 0.83 6.60 72.35 0.48 1.30 16 28 N -0.09 -2.09 11.63 37.02 0.43 -1.66 16 29 N -0.23 -6.18 12.04 -50.00 -0.60 -6.79 16 30 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.02 0.77 7.75 -2.39 -0.02 0.75 16 36 H 0.01 0.62 8.14 -2.38 -0.02 0.60 16 37 H 0.37 16.43 5.53 -92.71 -0.51 15.92 16 38 H 0.26 16.15 8.31 -92.71 -0.77 15.38 16 39 H 0.41 10.73 8.29 -92.71 -0.77 9.96 16 40 H 0.24 1.76 8.06 -2.91 -0.02 1.73 16 41 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 42 H 0.15 -0.44 8.08 -2.39 -0.02 -0.46 16 43 H 0.10 0.03 7.87 -2.39 -0.02 0.01 16 44 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 45 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 46 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 48 H 0.09 1.66 6.38 -2.39 -0.02 1.65 16 Total: -1.00 -84.38 396.50 1.18 -83.20 By element: Atomic # 1 Polarization: 27.44 SS G_CDS: -0.36 Total: 27.08 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: 6.45 Total: 6.81 kcal Atomic # 7 Polarization: -133.46 SS G_CDS: -5.03 Total: -138.48 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -1.78 Total: -26.59 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 1.90 Total: 47.98 kcal Total: -84.38 1.18 -83.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668259715.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.207 kcal (2) G-P(sol) polarization free energy of solvation -84.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds