Wall clock time and date at job start Tue Mar 31 2020 19:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47241 * 2 1 4 4 C 1.53005 * 109.46941 * 240.00107 * 2 1 3 5 5 C 1.52998 * 109.46882 * 175.00331 * 4 2 1 6 6 N 1.46503 * 109.47255 * 180.02562 * 5 4 2 7 7 C 1.36932 * 120.00314 * 179.97438 * 6 5 4 8 8 H 1.07996 * 119.99886 * 0.02562 * 7 6 5 9 9 C 1.38813 * 120.00053 * 179.97438 * 7 6 5 10 10 N 1.31615 * 120.00026 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00061 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47115 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.47320 * 120.00012 * 11 9 7 14 14 H 1.48500 * 109.47372 * 240.00179 * 11 9 7 15 15 N 1.46502 * 109.47157 * 120.00166 * 2 1 3 16 16 C 1.34771 * 119.99885 * 274.99819 * 15 2 1 17 17 O 1.21592 * 120.00323 * 0.02562 * 16 15 2 18 18 C 1.47527 * 119.99636 * 179.97438 * 16 15 2 19 19 C 1.36597 * 125.76571 * 179.97438 * 18 16 15 20 20 N 1.34820 * 106.83727 * 179.76095 * 19 18 16 21 21 C 1.46496 * 126.59513 * 180.27861 * 20 19 18 22 22 C 1.53001 * 109.47306 * 125.00156 * 21 20 19 23 23 H 1.08998 * 110.45111 * 52.39770 * 22 21 20 24 24 C 1.54505 * 110.51293 * 174.99800 * 22 21 20 25 25 C 1.54485 * 104.06220 * 118.64542 * 24 22 21 26 26 O 1.44422 * 104.79897 * 23.98140 * 25 24 22 27 27 C 1.44424 * 105.27535 * 319.48429 * 26 25 24 28 28 N 1.40214 * 106.80969 * 0.24835 * 20 19 18 29 29 N 1.28759 * 108.36448 * 359.97438 * 28 20 19 30 30 H 1.08998 * 109.47023 * 60.00094 * 1 2 3 31 31 H 1.09000 * 109.47241 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47177 * 299.99826 * 1 2 3 33 33 H 1.08997 * 109.47124 * 294.99753 * 4 2 1 34 34 H 1.08999 * 109.47378 * 54.99990 * 4 2 1 35 35 H 1.09002 * 109.47215 * 299.99525 * 5 4 2 36 36 H 1.08990 * 109.47960 * 59.99794 * 5 4 2 37 37 H 0.97008 * 119.99548 * 359.97438 * 6 5 4 38 38 H 0.97004 * 120.00352 * 180.02562 * 10 9 7 39 39 H 0.97003 * 119.99936 * 94.99667 * 15 2 1 40 40 H 1.08002 * 126.58530 * 0.03364 * 19 18 16 41 41 H 1.09009 * 109.47230 * 245.00314 * 21 20 19 42 42 H 1.09002 * 109.47171 * 5.00132 * 21 20 19 43 43 H 1.08995 * 110.51392 * 237.29524 * 24 22 21 44 44 H 1.09000 * 110.51037 * 0.02562 * 24 22 21 45 45 H 1.09000 * 110.37022 * 142.81105 * 25 24 22 46 46 H 1.08997 * 110.37209 * 265.15183 * 25 24 22 47 47 H 1.09001 * 110.37331 * 281.68348 * 27 26 25 48 48 H 1.09002 * 110.36857 * 159.34639 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6134 -1.3137 6 7 4.0531 -1.3034 -2.5102 7 6 5.3951 -1.3393 -2.7802 8 1 6.0936 -0.8592 -2.1109 9 6 5.8578 -1.9936 -3.9137 10 7 5.0066 -2.5791 -4.7291 11 14 7.6885 -2.0432 -4.2816 12 1 8.4271 -1.3162 -3.2179 13 1 8.1467 -3.4551 -4.3251 14 1 7.9474 -1.3981 -5.5939 15 7 2.0183 -0.6907 1.1962 16 6 2.1471 -0.0183 2.3571 17 8 1.8575 1.1613 2.4119 18 6 2.6383 -0.7140 3.5617 19 6 2.8138 -0.1502 4.7935 20 7 3.2691 -1.1239 5.6073 21 6 3.5963 -0.9917 7.0291 22 6 2.8092 -2.0293 7.8322 23 1 2.9578 -3.0257 7.4161 24 6 3.2289 -1.9953 9.3188 25 6 1.9309 -1.6180 10.0667 26 8 0.8639 -2.0286 9.1842 27 6 1.3074 -1.6684 7.8578 28 7 3.3684 -2.2875 4.8314 29 7 2.9918 -2.0087 3.6321 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.7516 -1.7715 -1.2057 34 1 1.6054 -0.2618 -2.1370 35 1 3.8532 0.4369 -1.3574 36 1 3.9995 -1.0728 -0.4261 37 1 3.4257 -1.7349 -3.1112 38 1 5.3299 -3.0366 -5.5210 39 1 2.2490 -1.6318 1.1526 40 1 2.6204 0.8772 5.0646 41 1 4.6644 -1.1549 7.1729 42 1 3.3324 0.0090 7.3712 43 1 3.5826 -2.9755 9.6383 44 1 3.9967 -1.2391 9.4817 45 1 1.8685 -2.1551 11.0131 46 1 1.8900 -0.5421 10.2366 47 1 1.1709 -0.6003 7.6890 48 1 0.7660 -2.2444 7.1073 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001668259716.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:47 Heat of formation + Delta-G solvation = 18.005434 kcal Electronic energy + Delta-G solvation = -28460.090462 eV Core-core repulsion = 24359.398775 eV Total energy + Delta-G solvation = -4100.691687 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.48235 -40.11037 -39.48608 -36.47639 -35.75717 -34.30382 -32.84912 -32.00020 -31.17277 -30.43205 -29.80528 -27.81899 -27.06203 -24.37437 -23.77565 -23.58033 -22.48095 -21.68525 -21.28018 -20.63443 -20.23081 -18.47119 -17.27222 -16.95374 -16.71204 -16.31988 -16.14162 -16.08633 -15.72393 -15.00720 -14.89301 -14.66404 -14.36903 -14.14524 -13.75373 -13.65900 -13.37299 -13.34710 -13.24149 -12.79802 -12.57503 -12.37679 -12.33143 -12.07611 -11.85680 -11.80917 -11.54554 -11.28522 -11.15735 -10.98256 -10.75762 -10.65205 -10.59553 -10.51349 -10.42665 -10.07567 -9.97059 -9.65959 -9.53217 -8.95365 -8.81145 -6.86923 -5.72189 -3.00384 0.86475 1.57870 1.64545 3.16532 3.25933 3.29013 3.46537 3.52019 3.54426 3.65799 3.79794 4.03077 4.07209 4.20595 4.36396 4.49109 4.56905 4.60972 4.61940 4.67254 4.75129 4.95750 5.00823 5.06443 5.13429 5.15841 5.28433 5.28763 5.40901 5.41420 5.57515 5.60267 5.78214 5.81906 5.99213 6.00638 6.07429 6.13399 6.29688 6.34042 6.39466 6.57783 6.88852 6.92968 7.50001 7.75335 7.78889 8.22233 8.46973 9.58034 10.16330 10.51137 11.50879 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015022 B = 0.002036 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.439504 B =13747.229968 C =15039.253754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 H 0.091 0.909 4 C -0.135 4.135 5 C 0.153 3.847 6 N -0.734 5.734 7 C -0.236 4.236 8 H 0.070 0.930 9 C -0.016 4.016 10 N -0.934 5.934 11 Si 0.907 3.093 12 H -0.281 1.281 13 H -0.292 1.292 14 H -0.292 1.292 15 N -0.701 5.701 16 C 0.605 3.395 17 O -0.545 6.545 18 C -0.096 4.096 19 C 0.091 3.909 20 N -0.365 5.365 21 C 0.131 3.869 22 C -0.138 4.138 23 H 0.105 0.895 24 C -0.147 4.147 25 C 0.042 3.958 26 O -0.371 6.371 27 C 0.050 3.950 28 N -0.061 5.061 29 N -0.198 5.198 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.018 0.982 36 H 0.020 0.980 37 H 0.383 0.617 38 H 0.254 0.746 39 H 0.410 0.590 40 H 0.204 0.796 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.095 0.905 46 H 0.062 0.938 47 H 0.062 0.938 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.444 4.836 31.291 32.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.041 3.959 3 H 0.109 0.891 4 C -0.173 4.173 5 C 0.025 3.975 6 N -0.378 5.378 7 C -0.367 4.367 8 H 0.088 0.912 9 C -0.212 4.212 10 N -0.583 5.583 11 Si 0.738 3.262 12 H -0.206 1.206 13 H -0.219 1.219 14 H -0.219 1.219 15 N -0.352 5.352 16 C 0.388 3.612 17 O -0.422 6.422 18 C -0.236 4.236 19 C -0.066 4.066 20 N -0.150 5.150 21 C 0.010 3.990 22 C -0.158 4.158 23 H 0.124 0.876 24 C -0.185 4.185 25 C -0.035 4.035 26 O -0.289 6.289 27 C -0.027 4.027 28 N -0.041 5.041 29 N -0.072 5.072 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.036 0.964 36 H 0.038 0.962 37 H 0.217 0.783 38 H 0.064 0.936 39 H 0.246 0.754 40 H 0.221 0.779 41 H 0.123 0.877 42 H 0.126 0.874 43 H 0.104 0.896 44 H 0.102 0.898 45 H 0.113 0.887 46 H 0.080 0.920 47 H 0.080 0.920 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.283 4.135 31.409 32.745 hybrid contribution 1.045 0.467 -0.404 1.213 sum -7.238 4.602 31.005 32.170 Atomic orbital electron populations 1.22166 0.95277 1.02163 1.02326 1.21046 0.93672 0.97693 0.83499 0.89133 1.22070 0.98084 1.00954 0.96241 1.20646 0.90403 0.95595 0.90817 1.42366 1.05368 1.64987 1.25050 1.19279 0.83890 1.28236 1.05335 0.91223 1.24740 0.97681 1.01011 0.97752 1.69668 1.32624 1.40857 1.15140 0.86116 0.85173 0.77206 0.77717 1.20611 1.21877 1.21889 1.45936 1.65508 1.14751 1.08961 1.16726 0.77267 0.85533 0.81637 1.90791 1.51723 1.14835 1.84830 1.21551 1.14303 0.91545 0.96152 1.23368 0.96410 0.96588 0.90216 1.50516 1.45034 1.08693 1.10724 1.22150 1.01824 1.01223 0.73830 1.22924 0.95831 1.01019 0.95997 0.87647 1.22961 0.98876 1.03847 0.92833 1.23471 0.85505 0.99903 0.94606 1.89188 1.40778 1.82478 1.16477 1.23503 0.92942 1.00219 0.86057 1.82015 1.21791 1.04344 0.95978 1.74697 1.07894 1.13073 1.11532 0.91400 0.92411 0.92377 0.91208 0.90107 0.96439 0.96217 0.78313 0.93620 0.75414 0.77933 0.87724 0.87438 0.89569 0.89762 0.88672 0.91959 0.92029 0.88817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.48 37.16 0.35 -1.56 16 2 C 0.15 2.03 2.57 -67.93 -0.17 1.85 16 3 H 0.09 1.37 7.58 -51.93 -0.39 0.98 16 4 C -0.14 -2.16 4.87 -26.73 -0.13 -2.29 16 5 C 0.15 3.17 6.15 -4.04 -0.02 3.15 16 6 N -0.73 -19.11 5.60 -59.91 -0.34 -19.45 16 7 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 8 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 9 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 10 N -0.93 -28.79 13.06 55.49 0.72 -28.07 16 11 Si 0.91 22.99 29.55 -169.99 -5.02 17.96 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 14 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 15 N -0.70 -9.76 4.53 -54.85 -0.25 -10.01 16 16 C 0.60 8.58 7.78 -12.48 -0.10 8.48 16 17 O -0.54 -8.72 16.53 5.28 0.09 -8.63 16 18 C -0.10 -1.20 6.99 -83.55 -0.58 -1.78 16 19 C 0.09 0.80 11.27 -16.83 -0.19 0.61 16 20 N -0.36 -2.94 3.58 -61.06 -0.22 -3.16 16 21 C 0.13 0.51 5.69 -4.04 -0.02 0.48 16 22 C -0.14 -0.64 3.24 -89.06 -0.29 -0.92 16 23 H 0.11 0.66 8.06 -51.93 -0.42 0.25 16 24 C -0.15 -0.42 6.74 -25.16 -0.17 -0.59 16 25 C 0.04 0.17 7.63 37.94 0.29 0.46 16 26 O -0.37 -2.88 11.65 -35.23 -0.41 -3.29 16 27 C 0.05 0.31 7.08 37.93 0.27 0.57 16 28 N -0.06 -0.72 13.57 60.35 0.82 0.10 16 29 N -0.20 -2.68 12.04 32.85 0.40 -2.28 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.02 0.42 7.75 -51.93 -0.40 0.02 16 37 H 0.38 10.37 7.67 -40.82 -0.31 10.06 16 38 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 39 H 0.41 5.63 8.29 -40.82 -0.34 5.29 16 40 H 0.20 1.14 8.06 -52.49 -0.42 0.72 16 41 H 0.10 0.30 8.14 -51.92 -0.42 -0.13 16 42 H 0.11 0.13 7.90 -51.93 -0.41 -0.29 16 43 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 44 H 0.08 0.08 7.73 -51.93 -0.40 -0.32 16 45 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 47 H 0.06 0.31 7.74 -51.93 -0.40 -0.10 16 48 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 402.90 15.07 6.07 6.07 Total: -1.00 -36.21 402.90 -6.86 -43.07 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -7.70 Total: 6.77 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -1.02 Total: 0.91 kcal Atomic # 7 Polarization: -64.00 SS G_CDS: 1.14 Total: -62.87 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: -0.32 Total: -11.92 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.96 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.21 -6.86 -43.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668259716.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.074 kcal (2) G-P(sol) polarization free energy of solvation -36.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds