Wall clock time and date at job start Tue Mar 31 2020 19:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47241 * 2 1 4 4 C 1.53005 * 109.46941 * 240.00107 * 2 1 3 5 5 C 1.52998 * 109.46882 * 175.00331 * 4 2 1 6 6 N 1.46503 * 109.47255 * 180.02562 * 5 4 2 7 7 C 1.36932 * 120.00314 * 179.97438 * 6 5 4 8 8 H 1.07996 * 119.99886 * 0.02562 * 7 6 5 9 9 C 1.38813 * 120.00053 * 179.97438 * 7 6 5 10 10 N 1.31615 * 120.00026 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00061 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47115 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.47320 * 120.00012 * 11 9 7 14 14 H 1.48500 * 109.47372 * 240.00179 * 11 9 7 15 15 N 1.46502 * 109.47157 * 120.00166 * 2 1 3 16 16 C 1.34771 * 119.99885 * 274.99819 * 15 2 1 17 17 O 1.21592 * 120.00323 * 0.02562 * 16 15 2 18 18 C 1.47527 * 119.99636 * 179.97438 * 16 15 2 19 19 C 1.36597 * 125.76571 * 179.97438 * 18 16 15 20 20 N 1.34820 * 106.83727 * 179.76095 * 19 18 16 21 21 C 1.46496 * 126.59513 * 180.27861 * 20 19 18 22 22 C 1.53001 * 109.47306 * 125.00156 * 21 20 19 23 23 H 1.08998 * 110.45111 * 52.39770 * 22 21 20 24 24 C 1.54505 * 110.51293 * 174.99800 * 22 21 20 25 25 C 1.54485 * 104.06220 * 118.64542 * 24 22 21 26 26 O 1.44422 * 104.79897 * 23.98140 * 25 24 22 27 27 C 1.44424 * 105.27535 * 319.48429 * 26 25 24 28 28 N 1.40214 * 106.80969 * 0.24835 * 20 19 18 29 29 N 1.28759 * 108.36448 * 359.97438 * 28 20 19 30 30 H 1.08998 * 109.47023 * 60.00094 * 1 2 3 31 31 H 1.09000 * 109.47241 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47177 * 299.99826 * 1 2 3 33 33 H 1.08997 * 109.47124 * 294.99753 * 4 2 1 34 34 H 1.08999 * 109.47378 * 54.99990 * 4 2 1 35 35 H 1.09002 * 109.47215 * 299.99525 * 5 4 2 36 36 H 1.08990 * 109.47960 * 59.99794 * 5 4 2 37 37 H 0.97008 * 119.99548 * 359.97438 * 6 5 4 38 38 H 0.97004 * 120.00352 * 180.02562 * 10 9 7 39 39 H 0.97003 * 119.99936 * 94.99667 * 15 2 1 40 40 H 1.08002 * 126.58530 * 0.03364 * 19 18 16 41 41 H 1.09009 * 109.47230 * 245.00314 * 21 20 19 42 42 H 1.09002 * 109.47171 * 5.00132 * 21 20 19 43 43 H 1.08995 * 110.51392 * 237.29524 * 24 22 21 44 44 H 1.09000 * 110.51037 * 0.02562 * 24 22 21 45 45 H 1.09000 * 110.37022 * 142.81105 * 25 24 22 46 46 H 1.08997 * 110.37209 * 265.15183 * 25 24 22 47 47 H 1.09001 * 110.37331 * 281.68348 * 27 26 25 48 48 H 1.09002 * 110.36857 * 159.34639 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6134 -1.3137 6 7 4.0531 -1.3034 -2.5102 7 6 5.3951 -1.3393 -2.7802 8 1 6.0936 -0.8592 -2.1109 9 6 5.8578 -1.9936 -3.9137 10 7 5.0066 -2.5791 -4.7291 11 14 7.6885 -2.0432 -4.2816 12 1 8.4271 -1.3162 -3.2179 13 1 8.1467 -3.4551 -4.3251 14 1 7.9474 -1.3981 -5.5939 15 7 2.0183 -0.6907 1.1962 16 6 2.1471 -0.0183 2.3571 17 8 1.8575 1.1613 2.4119 18 6 2.6383 -0.7140 3.5617 19 6 2.8138 -0.1502 4.7935 20 7 3.2691 -1.1239 5.6073 21 6 3.5963 -0.9917 7.0291 22 6 2.8092 -2.0293 7.8322 23 1 2.9578 -3.0257 7.4161 24 6 3.2289 -1.9953 9.3188 25 6 1.9309 -1.6180 10.0667 26 8 0.8639 -2.0286 9.1842 27 6 1.3074 -1.6684 7.8578 28 7 3.3684 -2.2875 4.8314 29 7 2.9918 -2.0087 3.6321 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.7516 -1.7715 -1.2057 34 1 1.6054 -0.2618 -2.1370 35 1 3.8532 0.4369 -1.3574 36 1 3.9995 -1.0728 -0.4261 37 1 3.4257 -1.7349 -3.1112 38 1 5.3299 -3.0366 -5.5210 39 1 2.2490 -1.6318 1.1526 40 1 2.6204 0.8772 5.0646 41 1 4.6644 -1.1549 7.1729 42 1 3.3324 0.0090 7.3712 43 1 3.5826 -2.9755 9.6383 44 1 3.9967 -1.2391 9.4817 45 1 1.8685 -2.1551 11.0131 46 1 1.8900 -0.5421 10.2366 47 1 1.1709 -0.6003 7.6890 48 1 0.7660 -2.2444 7.1073 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001668259716.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:46 Heat of formation + Delta-G solvation = -9.480001 kcal Electronic energy + Delta-G solvation = -28461.282320 eV Core-core repulsion = 24359.398775 eV Total energy + Delta-G solvation = -4101.883545 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.26736 -40.70700 -40.40313 -37.84223 -36.33760 -36.09100 -33.68475 -33.31126 -32.49554 -31.42459 -30.30547 -29.39882 -27.57008 -25.94707 -24.98332 -24.13706 -23.22406 -23.05236 -22.16167 -21.64746 -21.08485 -19.41520 -18.99888 -17.72496 -17.43007 -17.28618 -16.94433 -16.67212 -16.49327 -16.27499 -15.85884 -15.63978 -15.46440 -15.42222 -15.18752 -14.92836 -14.70393 -14.25262 -14.01603 -13.76180 -13.58032 -13.12589 -13.08441 -12.96260 -12.91334 -12.87835 -12.43172 -12.39909 -12.32660 -12.23172 -12.16032 -11.99767 -11.92310 -11.63465 -11.60893 -11.28863 -11.18979 -10.96123 -10.83670 -10.40935 -10.02698 -9.01304 -7.96797 -5.25718 0.14362 0.62423 1.06908 1.45731 1.46875 1.57024 2.15296 2.26197 2.54440 2.90433 3.17515 3.25843 3.36526 3.47317 3.63304 3.73913 3.75968 3.92160 3.96672 4.07238 4.07718 4.17732 4.19335 4.29575 4.38272 4.39960 4.51629 4.57831 4.65797 4.66901 4.70000 4.78237 4.81043 4.87844 4.89563 5.00828 5.01772 5.11281 5.22696 5.28579 5.35297 5.43973 5.47425 5.54795 5.77573 6.25901 6.43808 6.90271 7.14629 7.32142 8.07469 8.32012 9.26710 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015022 B = 0.002036 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.439504 B =13747.229968 C =15039.253754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.152 3.848 3 H 0.080 0.920 4 C -0.120 4.120 5 C 0.154 3.846 6 N -0.745 5.745 7 C -0.247 4.247 8 H 0.070 0.930 9 C -0.075 4.075 10 N -0.967 5.967 11 Si 0.974 3.026 12 H -0.269 1.269 13 H -0.291 1.291 14 H -0.290 1.290 15 N -0.704 5.704 16 C 0.605 3.395 17 O -0.567 6.567 18 C -0.126 4.126 19 C 0.112 3.888 20 N -0.348 5.348 21 C 0.122 3.878 22 C -0.133 4.133 23 H 0.081 0.919 24 C -0.138 4.138 25 C 0.034 3.966 26 O -0.404 6.404 27 C 0.047 3.953 28 N -0.086 5.086 29 N -0.228 5.228 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.012 0.988 36 H 0.016 0.984 37 H 0.376 0.624 38 H 0.252 0.748 39 H 0.410 0.590 40 H 0.240 0.760 41 H 0.123 0.877 42 H 0.147 0.853 43 H 0.083 0.917 44 H 0.113 0.887 45 H 0.100 0.900 46 H 0.079 0.921 47 H 0.078 0.922 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.686 6.271 33.387 34.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.048 3.952 3 H 0.098 0.902 4 C -0.158 4.158 5 C 0.027 3.973 6 N -0.388 5.388 7 C -0.379 4.379 8 H 0.088 0.912 9 C -0.268 4.268 10 N -0.617 5.617 11 Si 0.803 3.197 12 H -0.194 1.194 13 H -0.218 1.218 14 H -0.217 1.217 15 N -0.354 5.354 16 C 0.390 3.610 17 O -0.446 6.446 18 C -0.266 4.266 19 C -0.046 4.046 20 N -0.133 5.133 21 C 0.003 3.997 22 C -0.152 4.152 23 H 0.100 0.900 24 C -0.176 4.176 25 C -0.042 4.042 26 O -0.324 6.324 27 C -0.030 4.030 28 N -0.067 5.067 29 N -0.102 5.102 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.105 0.895 35 H 0.030 0.970 36 H 0.034 0.966 37 H 0.208 0.792 38 H 0.061 0.939 39 H 0.246 0.754 40 H 0.256 0.744 41 H 0.141 0.859 42 H 0.165 0.835 43 H 0.102 0.898 44 H 0.132 0.868 45 H 0.118 0.882 46 H 0.097 0.903 47 H 0.096 0.904 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.517 5.563 33.562 34.841 hybrid contribution 0.786 0.048 -0.901 1.196 sum -6.732 5.611 32.662 33.817 Atomic orbital electron populations 1.22088 0.93266 1.02846 1.02876 1.20934 0.95094 0.96596 0.82614 0.90236 1.21915 0.94572 1.01641 0.97678 1.20756 0.93572 0.94340 0.88595 1.42560 1.04511 1.65342 1.26386 1.19633 0.85303 1.27685 1.05294 0.91168 1.25579 1.02147 1.01207 0.97843 1.69813 1.34507 1.41866 1.15564 0.85068 0.80014 0.77060 0.77583 1.19358 1.21802 1.21699 1.45972 1.65581 1.14728 1.09102 1.16940 0.76706 0.85312 0.82045 1.90765 1.52894 1.15627 1.85283 1.21522 1.16424 0.91766 0.96859 1.23866 0.94080 0.97718 0.88897 1.50783 1.43217 1.07402 1.11864 1.22664 1.02818 1.03054 0.71138 1.22809 0.95022 1.00072 0.97321 0.90008 1.22944 0.98969 1.04782 0.90910 1.23708 0.85055 1.01040 0.94361 1.89152 1.42609 1.83115 1.17507 1.23528 0.93628 1.00670 0.85150 1.81924 1.22629 1.06123 0.95984 1.74665 1.08940 1.13952 1.12622 0.90041 0.91664 0.92592 0.90818 0.89510 0.96995 0.96586 0.79214 0.93896 0.75435 0.74367 0.85865 0.83475 0.89793 0.86838 0.88176 0.90258 0.90413 0.91230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 9.48 71.98 0.68 -2.75 16 2 C 0.15 4.17 2.57 44.99 0.12 4.29 16 3 H 0.08 2.38 7.58 -2.39 -0.02 2.37 16 4 C -0.12 -3.79 4.87 30.60 0.15 -3.64 16 5 C 0.15 6.42 6.15 86.38 0.53 6.95 16 6 N -0.75 -39.25 5.60 -343.46 -1.92 -41.17 16 7 C -0.25 -14.39 9.99 84.03 0.84 -13.55 16 8 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 9 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 10 N -0.97 -60.18 13.06 21.65 0.28 -59.90 16 11 Si 0.97 47.36 29.55 68.60 2.03 49.39 16 12 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 13 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 14 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 15 N -0.70 -19.62 4.53 -445.70 -2.02 -21.64 16 16 C 0.60 17.02 7.78 86.69 0.67 17.70 16 17 O -0.57 -17.76 16.53 -4.01 -0.07 -17.83 16 18 C -0.13 -3.06 6.99 40.82 0.29 -2.78 16 19 C 0.11 1.75 11.27 83.85 0.95 2.69 16 20 N -0.35 -4.94 3.58 -347.09 -1.24 -6.18 16 21 C 0.12 0.55 5.69 86.38 0.49 1.04 16 22 C -0.13 -1.00 3.24 -9.78 -0.03 -1.03 16 23 H 0.08 1.03 8.06 -2.39 -0.02 1.01 16 24 C -0.14 -0.44 6.74 31.61 0.21 -0.23 16 25 C 0.03 0.21 7.63 72.49 0.55 0.77 16 26 O -0.40 -6.04 11.65 -148.98 -1.74 -7.78 16 27 C 0.05 0.54 7.08 72.48 0.51 1.05 16 28 N -0.09 -2.03 13.57 37.02 0.50 -1.52 16 29 N -0.23 -6.25 12.04 -49.99 -0.60 -6.85 16 30 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.05 1.30 8.14 -2.39 -0.02 1.29 16 33 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 35 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.02 0.69 7.75 -2.39 -0.02 0.67 16 37 H 0.38 20.65 7.67 -92.70 -0.71 19.94 16 38 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 39 H 0.41 11.46 8.29 -92.71 -0.77 10.70 16 40 H 0.24 1.79 8.06 -2.91 -0.02 1.77 16 41 H 0.12 0.22 8.14 -2.38 -0.02 0.20 16 42 H 0.15 -0.42 7.90 -2.39 -0.02 -0.44 16 43 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 44 H 0.11 -0.28 7.73 -2.39 -0.02 -0.30 16 45 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 46 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 47 H 0.08 0.60 7.74 -2.39 -0.02 0.58 16 48 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -79.91 402.90 1.15 -78.76 By element: Atomic # 1 Polarization: 28.71 SS G_CDS: -0.50 Total: 28.21 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: 6.43 Total: 6.51 kcal Atomic # 7 Polarization: -132.26 SS G_CDS: -5.00 Total: -137.27 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -1.80 Total: -25.61 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.39 kcal Total: -79.91 1.15 -78.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668259716.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.281 kcal (2) G-P(sol) polarization free energy of solvation -79.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds