Wall clock time and date at job start Tue Mar 31 2020 20:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47220 * 2 1 4 4 N 1.39938 * 125.75430 * 269.99893 * 3 2 1 5 5 C 1.30438 * 108.89808 * 179.73537 * 4 3 2 6 6 C 1.41291 * 108.02437 * 0.41116 * 5 4 3 7 7 C 1.47431 * 126.41697 * 179.85443 * 6 5 4 8 8 O 1.21605 * 120.00033 * 179.68844 * 7 6 5 9 9 N 1.34774 * 120.00140 * 359.68556 * 7 6 5 10 10 C 1.46495 * 120.00080 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.46996 * 35.00503 * 10 9 7 12 12 C 1.52994 * 109.47359 * 275.00294 * 10 9 7 13 13 C 1.53006 * 109.46914 * 154.99872 * 10 9 7 14 14 N 1.46898 * 109.47138 * 305.00206 * 13 10 9 15 15 C 1.46906 * 110.99888 * 180.02562 * 14 13 10 16 16 C 1.50699 * 109.47140 * 179.97438 * 15 14 13 17 17 O 1.21289 * 119.99678 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99614 * 180.02562 * 16 15 14 19 19 C 1.37097 * 119.99518 * 180.02562 * 18 16 15 20 20 H 1.08003 * 120.00058 * 359.97438 * 19 18 16 21 21 C 1.38949 * 120.00085 * 179.97438 * 19 18 16 22 22 N 1.31416 * 119.99807 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00409 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47268 * 90.00146 * 23 21 19 25 25 H 1.48500 * 109.47502 * 210.00166 * 23 21 19 26 26 H 1.48501 * 109.47054 * 330.00549 * 23 21 19 27 27 C 1.34258 * 125.75663 * 90.00027 * 3 2 1 28 28 C 1.50704 * 126.28590 * 359.97438 * 27 3 2 29 29 H 1.08998 * 109.47053 * 60.00093 * 1 2 3 30 30 H 1.09004 * 109.47255 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47263 * 300.00675 * 1 2 3 32 32 H 1.09001 * 109.46972 * 240.00223 * 2 1 3 33 33 H 1.08998 * 109.47053 * 119.99907 * 2 1 3 34 34 H 1.08006 * 125.99350 * 180.26007 * 5 4 3 35 35 H 0.97006 * 119.99482 * 359.97438 * 9 7 6 36 36 H 1.09006 * 109.46971 * 299.99615 * 12 10 9 37 37 H 1.08990 * 109.47506 * 59.99735 * 12 10 9 38 38 H 1.09002 * 109.47542 * 180.02562 * 12 10 9 39 39 H 1.08997 * 109.46770 * 185.00153 * 13 10 9 40 40 H 1.08995 * 109.47019 * 65.00366 * 13 10 9 41 41 H 1.00904 * 110.99913 * 303.95145 * 14 13 10 42 42 H 1.09004 * 109.47040 * 299.99934 * 15 14 13 43 43 H 1.09000 * 109.47033 * 59.99886 * 15 14 13 44 44 H 0.96996 * 120.00269 * 359.97438 * 18 16 15 45 45 H 0.97002 * 120.00022 * 179.97438 * 22 21 19 46 46 H 1.09003 * 109.46668 * 269.99725 * 28 27 3 47 47 H 1.08994 * 109.47489 * 29.99977 * 28 27 3 48 48 H 1.08998 * 109.46512 * 150.00105 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2909 2.1521 -1.1356 5 6 2.7017 3.3309 -0.7574 6 6 2.7167 3.3562 0.6552 7 6 3.1176 4.4915 1.5060 8 8 3.0801 4.3868 2.7170 9 7 3.5256 5.6454 0.9418 10 6 3.9235 6.7737 1.7872 11 1 4.4157 6.3993 2.6848 12 6 2.6828 7.5767 2.1832 13 6 4.8889 7.6746 1.0143 14 7 6.0233 6.8761 0.5312 15 6 6.9736 7.7101 -0.2168 16 6 8.1213 6.8585 -0.6949 17 8 8.1450 5.6733 -0.4382 18 7 9.1213 7.4139 -1.4076 19 6 10.1651 6.6391 -1.8430 20 1 10.1863 5.5837 -1.6144 21 6 11.1958 7.2115 -2.5783 22 7 11.1698 8.4955 -2.8568 23 14 12.6185 6.1559 -3.1709 24 1 12.3008 5.6051 -4.5129 25 1 13.8483 6.9841 -3.2542 26 1 12.8373 5.0393 -2.2167 27 6 2.2799 2.1209 1.0895 28 6 2.1245 1.6830 2.5231 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.9835 4.1443 -1.4097 35 1 3.5559 5.7288 -0.0242 36 1 2.1907 7.9512 1.2855 37 1 1.9951 6.9350 2.7337 38 1 2.9789 8.4165 2.8119 39 1 5.2539 8.4640 1.6713 40 1 4.3700 8.1194 0.1653 41 1 6.4822 6.4011 1.2941 42 1 6.4693 8.1555 -1.0744 43 1 7.3530 8.4996 0.4320 44 1 9.1021 8.3616 -1.6132 45 1 11.8896 8.8952 -3.3698 46 1 1.1182 1.9204 2.8685 47 1 2.2889 0.6079 2.5946 48 1 2.8539 2.2041 3.1432 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669429563.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:35 Heat of formation + Delta-G solvation = -6.277503 kcal Electronic energy + Delta-G solvation = -28744.388406 eV Core-core repulsion = 24642.643731 eV Total energy + Delta-G solvation = -4101.744674 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.57864 -39.31658 -38.24415 -36.51128 -34.92563 -34.21896 -33.59323 -32.27826 -31.32069 -31.11500 -29.55431 -27.55030 -27.38021 -25.01809 -24.31394 -23.30093 -22.70789 -21.24422 -20.19822 -19.66026 -19.18212 -17.88374 -17.64916 -16.59647 -16.10663 -15.84517 -15.61276 -15.14273 -14.95151 -14.75627 -14.53519 -14.26127 -14.08451 -13.84709 -13.78185 -13.49177 -13.30047 -13.26450 -13.06934 -12.76535 -12.55885 -12.53266 -12.32186 -12.23804 -11.93672 -11.73591 -11.72860 -11.50231 -11.45529 -11.02628 -10.91650 -10.86033 -10.38294 -10.20373 -9.69936 -9.54290 -9.49291 -8.98505 -8.59093 -8.44669 -8.06227 -7.94250 -6.40366 -3.80958 1.44363 2.14692 2.16239 3.19052 3.27517 3.33559 3.37641 3.59130 3.92855 4.08938 4.18011 4.32902 4.38406 4.54040 4.66962 4.74668 4.85248 4.89300 5.08938 5.12947 5.14050 5.17122 5.25974 5.28621 5.34049 5.36324 5.45461 5.50650 5.58693 5.63667 5.65169 5.74355 5.80845 5.90768 5.97891 6.02752 6.13370 6.27969 6.34732 6.66290 6.72296 7.19312 7.45704 7.56704 7.64109 7.76917 8.08003 8.46685 8.63048 9.19674 9.56098 10.07805 10.77408 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011607 B = 0.002377 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.728729 B =11776.175878 C =13560.907158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.124 3.876 3 N -0.362 5.362 4 N -0.299 5.299 5 C 0.089 3.911 6 C -0.294 4.294 7 C 0.600 3.400 8 O -0.560 6.560 9 N -0.704 5.704 10 C 0.148 3.852 11 H 0.086 0.914 12 C -0.160 4.160 13 C 0.048 3.952 14 N -0.666 5.666 15 C 0.050 3.950 16 C 0.441 3.559 17 O -0.581 6.581 18 N -0.565 5.565 19 C -0.298 4.298 20 H 0.102 0.898 21 C 0.021 3.979 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C 0.154 3.846 28 C -0.097 4.097 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.190 0.810 35 H 0.404 0.596 36 H 0.057 0.943 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.042 0.958 40 H 0.077 0.923 41 H 0.351 0.649 42 H 0.086 0.914 43 H 0.043 0.957 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.083 0.917 47 H 0.068 0.932 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.586 -7.723 8.126 25.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.003 3.997 3 N -0.142 5.142 4 N -0.117 5.117 5 C -0.099 4.099 6 C -0.308 4.308 7 C 0.388 3.612 8 O -0.440 6.440 9 N -0.354 5.354 10 C 0.043 3.957 11 H 0.104 0.896 12 C -0.219 4.219 13 C -0.083 4.083 14 N -0.299 5.299 15 C -0.082 4.082 16 C 0.226 3.774 17 O -0.465 6.465 18 N -0.202 5.202 19 C -0.428 4.428 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.194 1.194 27 C 0.022 3.978 28 C -0.156 4.156 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.117 0.883 33 H 0.113 0.887 34 H 0.207 0.793 35 H 0.238 0.762 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.060 0.940 40 H 0.095 0.905 41 H 0.170 0.830 42 H 0.104 0.896 43 H 0.061 0.939 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.102 0.898 47 H 0.086 0.914 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -23.071 -9.593 7.462 26.076 hybrid contribution 1.459 1.294 0.189 1.959 sum -21.612 -8.300 7.650 24.382 Atomic orbital electron populations 1.22180 0.94002 1.03226 1.03369 1.21757 0.95406 0.77744 1.04827 1.48552 1.50027 1.12219 1.03434 1.77185 1.22831 1.04348 1.07372 1.24056 0.96351 0.95557 0.93941 1.19991 1.20799 0.96511 0.93539 1.17123 0.75964 0.81356 0.86755 1.90692 1.56191 1.82883 1.14207 1.45551 1.66921 1.12430 1.10464 1.20896 0.94353 0.86200 0.94257 0.89577 1.22138 0.98060 1.00079 1.01651 1.22320 0.92688 0.94589 0.98656 1.60067 1.10365 1.29029 1.30391 1.21680 0.93418 0.94558 0.98561 1.19821 0.84541 0.88748 0.84303 1.90538 1.79095 1.15970 1.60900 1.41863 1.19379 1.11476 1.47433 1.19695 0.98137 0.94523 1.30397 0.87971 1.25256 0.99226 0.96126 0.97392 1.69614 1.34267 1.10537 1.39970 0.85862 0.79923 0.79374 0.79164 1.20399 1.20953 1.19446 1.21483 0.94521 0.90750 0.91029 1.20667 1.04805 1.01442 0.88644 0.91472 0.90300 0.91925 0.88286 0.88675 0.79318 0.76157 0.92392 0.91880 0.91752 0.93963 0.90488 0.82957 0.89599 0.93890 0.77487 0.91910 0.89809 0.91356 0.87447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.93 10.24 37.16 0.38 -0.55 16 2 C 0.12 0.85 6.93 -4.04 -0.03 0.82 16 3 N -0.36 -4.00 3.58 -56.60 -0.20 -4.20 16 4 N -0.30 -3.93 12.50 30.86 0.39 -3.54 16 5 C 0.09 1.11 11.50 -16.98 -0.20 0.92 16 6 C -0.29 -3.88 6.13 -105.07 -0.64 -4.52 16 7 C 0.60 8.41 7.78 -12.52 -0.10 8.32 16 8 O -0.56 -9.00 14.50 5.27 0.08 -8.92 16 9 N -0.70 -8.55 4.79 -54.88 -0.26 -8.81 16 10 C 0.15 1.68 2.81 -67.93 -0.19 1.49 16 11 H 0.09 1.13 7.58 -51.93 -0.39 0.74 16 12 C -0.16 -1.51 9.48 37.15 0.35 -1.16 16 13 C 0.05 0.54 5.24 -3.82 -0.02 0.52 16 14 N -0.67 -10.28 5.85 -115.05 -0.67 -10.95 16 15 C 0.05 0.86 6.17 -4.97 -0.03 0.83 16 16 C 0.44 10.35 7.82 -10.99 -0.09 10.26 16 17 O -0.58 -15.86 15.78 5.55 0.09 -15.77 16 18 N -0.56 -14.31 5.29 -10.96 -0.06 -14.37 16 19 C -0.30 -8.36 9.68 -14.93 -0.14 -8.51 16 20 H 0.10 3.02 7.16 -52.48 -0.38 2.65 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.62 13.05 55.50 0.72 -23.90 16 23 Si 0.93 21.24 29.55 -169.99 -5.02 16.22 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 C 0.15 1.81 7.01 -81.60 -0.57 1.24 16 28 C -0.10 -0.88 9.57 36.01 0.34 -0.54 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.10 0.45 7.02 -51.93 -0.36 0.09 16 34 H 0.19 1.89 7.50 -52.48 -0.39 1.50 16 35 H 0.40 4.50 7.56 -40.82 -0.31 4.19 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.35 5.96 8.43 -39.29 -0.33 5.63 16 42 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 43 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 45 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 46 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.07 0.44 7.05 -51.93 -0.37 0.08 16 48 H 0.11 1.19 6.50 -51.93 -0.34 0.86 16 LS Contribution 404.77 15.07 6.10 6.10 Total: -1.00 -35.11 404.77 -7.27 -42.38 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: -7.40 Total: 16.15 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: -1.03 Total: 9.60 kcal Atomic # 7 Polarization: -65.68 SS G_CDS: -0.09 Total: -65.77 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: 0.16 Total: -24.69 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.11 -7.27 -42.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669429563.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.107 kcal (2) G-P(sol) polarization free energy of solvation -35.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds