Wall clock time and date at job start Tue Mar 31 2020 19:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47049 * 2 1 4 4 C 1.52997 * 109.47364 * 239.99800 * 2 1 3 5 5 N 1.46896 * 109.47142 * 185.00198 * 4 2 1 6 6 C 1.46894 * 111.00184 * 293.95156 * 5 4 2 7 7 C 1.46903 * 110.99982 * 169.99888 * 5 4 2 8 8 C 1.50701 * 109.47117 * 190.00013 * 7 5 4 9 9 O 1.21287 * 120.00074 * 359.97438 * 8 7 5 10 10 N 1.34781 * 120.00058 * 180.02562 * 8 7 5 11 11 C 1.37089 * 120.00057 * 180.02562 * 10 8 7 12 12 H 1.08002 * 120.00242 * 359.97438 * 11 10 8 13 13 C 1.38953 * 120.00124 * 180.02562 * 11 10 8 14 14 N 1.31408 * 119.99841 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99931 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.47100 * 89.99957 * 15 13 11 17 17 H 1.48505 * 109.46882 * 209.99146 * 15 13 11 18 18 H 1.48498 * 109.47343 * 329.99425 * 15 13 11 19 19 N 1.46504 * 109.46805 * 119.99617 * 2 1 3 20 20 C 1.34771 * 120.00493 * 275.00240 * 19 2 1 21 21 O 1.21288 * 119.99414 * 359.97438 * 20 19 2 22 22 C 1.50697 * 120.00375 * 180.02562 * 20 19 2 23 23 H 1.08994 * 109.47009 * 59.99944 * 22 20 19 24 24 C 1.53002 * 109.47160 * 299.99691 * 22 20 19 25 25 N 1.46502 * 109.47116 * 180.02562 * 22 20 19 26 26 C 1.34942 * 126.03991 * 84.97435 * 25 22 20 27 27 C 1.35316 * 107.74613 * 179.75096 * 26 25 22 28 28 C 1.39870 * 107.92161 * 0.39436 * 27 26 25 29 29 N 1.30836 * 108.20019 * 359.59732 * 28 27 26 30 30 H 1.09007 * 109.47230 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47614 * 300.00038 * 1 2 3 32 32 H 1.08997 * 109.46953 * 60.00267 * 1 2 3 33 33 H 1.09005 * 109.46840 * 305.00027 * 4 2 1 34 34 H 1.09001 * 109.47131 * 64.99791 * 4 2 1 35 35 H 1.09003 * 109.46806 * 59.99880 * 6 5 4 36 36 H 1.09002 * 109.47566 * 179.97438 * 6 5 4 37 37 H 1.08995 * 109.47507 * 300.00233 * 6 5 4 38 38 H 1.08998 * 109.47412 * 309.99809 * 7 5 4 39 39 H 1.08998 * 109.46807 * 69.99896 * 7 5 4 40 40 H 0.97006 * 119.99547 * 359.97438 * 10 8 7 41 41 H 0.97003 * 120.00168 * 180.02562 * 14 13 11 42 42 H 0.97003 * 119.99625 * 95.00170 * 19 2 1 43 43 H 1.08997 * 109.47230 * 180.02562 * 24 22 20 44 44 H 1.08999 * 109.46993 * 300.00355 * 24 22 20 45 45 H 1.09000 * 109.47031 * 59.99916 * 24 22 20 46 46 H 1.08002 * 126.12737 * 359.97438 * 26 25 22 47 47 H 1.07998 * 126.04386 * 180.27449 * 27 26 25 48 48 H 1.08002 * 125.90382 * 179.86983 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5040 -0.8267 -1.1903 6 6 4.1310 0.4992 -1.2719 7 6 4.0108 -1.7145 -2.2453 8 6 5.4725 -1.9938 -2.0076 9 8 6.0367 -1.5014 -1.0535 10 7 6.1531 -2.7900 -2.8558 11 6 7.4826 -3.0446 -2.6392 12 1 7.9848 -2.6068 -1.7892 13 6 8.1844 -3.8650 -3.5140 14 7 7.5735 -4.3973 -4.5485 15 14 9.9962 -4.2113 -3.2193 16 1 10.1371 -5.4190 -2.3667 17 1 10.6740 -4.4421 -4.5203 18 1 10.6178 -3.0481 -2.5368 19 7 2.0183 -0.6906 1.1963 20 6 2.1469 -0.0183 2.3572 21 8 1.8589 1.1587 2.4115 22 6 2.6497 -0.7285 3.5876 23 1 3.6490 -1.1202 3.3980 24 6 1.7061 -1.8827 3.9316 25 7 2.6982 0.2127 4.7092 26 6 1.6711 0.5290 5.5252 27 6 2.1252 1.4257 6.4312 28 6 3.4737 1.6725 6.1540 29 7 3.8192 0.9434 5.1240 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.6054 -1.7199 -1.2950 34 1 1.7517 -0.1584 -2.1369 35 1 3.7910 1.1138 -0.4383 36 1 5.2148 0.3922 -1.2255 37 1 3.8525 0.9756 -2.2118 38 1 3.4546 -2.6517 -2.2297 39 1 3.8858 -1.2339 -3.2156 40 1 5.7018 -3.1835 -3.6191 41 1 8.0633 -4.9703 -5.1590 42 1 2.2490 -1.6318 1.1527 43 1 2.0695 -2.3961 4.8217 44 1 0.7068 -1.4909 4.1211 45 1 1.6696 -2.5831 3.0972 46 1 0.6675 0.1342 5.4680 47 1 1.5478 1.8733 7.2266 48 1 4.1195 2.3451 6.6989 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669777567.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:07 Heat of formation + Delta-G solvation = 21.258334 kcal Electronic energy + Delta-G solvation = -29510.571007 eV Core-core repulsion = 25410.020376 eV Total energy + Delta-G solvation = -4100.550631 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.37889 -39.88833 -38.64813 -37.07624 -34.79845 -34.76661 -33.80127 -31.33536 -31.21716 -30.10585 -29.38734 -28.04516 -26.97119 -25.23486 -24.79898 -22.94371 -21.82429 -21.10523 -20.51702 -19.98281 -19.18272 -17.89624 -17.77965 -17.30849 -16.24377 -16.06443 -15.57157 -15.16270 -14.93974 -14.76534 -14.51944 -14.45286 -14.01685 -13.84518 -13.70607 -13.58890 -13.43226 -13.07958 -12.94940 -12.84417 -12.68465 -12.44662 -12.17164 -12.10136 -11.89993 -11.85830 -11.53469 -11.40327 -11.27498 -10.95164 -10.79131 -10.70316 -10.41221 -10.24172 -10.13658 -9.50137 -9.42088 -9.13759 -8.64019 -8.49895 -8.01723 -7.91759 -6.44431 -3.85138 1.78962 2.25997 2.47486 2.84210 3.13156 3.15955 3.24986 3.30906 3.86323 3.89667 4.20146 4.21993 4.45111 4.62647 4.67566 4.70570 4.87535 4.98064 5.05397 5.10210 5.13644 5.22592 5.26034 5.35800 5.44909 5.45180 5.49934 5.56132 5.65934 5.69357 5.72349 5.83906 5.90697 5.94383 5.94515 6.00069 6.24133 6.39192 6.55756 6.59032 6.87837 7.18350 7.29247 7.42325 7.52883 7.67577 8.03729 8.10112 8.59006 9.15799 9.51601 10.03437 10.73258 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013118 B = 0.002539 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.909348 B =11024.764204 C =12403.940573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.148 3.852 3 H 0.088 0.912 4 C 0.042 3.958 5 N -0.515 5.515 6 C 0.021 3.979 7 C 0.045 3.955 8 C 0.443 3.557 9 O -0.576 6.576 10 N -0.564 5.564 11 C -0.298 4.298 12 H 0.103 0.897 13 C 0.022 3.978 14 N -0.902 5.902 15 Si 0.929 3.071 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.269 1.269 19 N -0.699 5.699 20 C 0.507 3.493 21 O -0.531 6.531 22 C 0.140 3.860 23 H 0.133 0.867 24 C -0.159 4.159 25 N -0.351 5.351 26 C 0.066 3.934 27 C -0.277 4.277 28 C 0.043 3.957 29 N -0.286 5.286 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.048 0.952 35 H 0.059 0.941 36 H 0.096 0.904 37 H 0.015 0.985 38 H 0.087 0.913 39 H 0.047 0.953 40 H 0.391 0.609 41 H 0.271 0.729 42 H 0.406 0.594 43 H 0.080 0.920 44 H 0.070 0.930 45 H 0.090 0.910 46 H 0.168 0.832 47 H 0.145 0.855 48 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.984 4.542 12.762 22.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.043 3.957 3 H 0.106 0.894 4 C -0.087 4.087 5 N -0.239 5.239 6 C -0.127 4.127 7 C -0.086 4.086 8 C 0.228 3.772 9 O -0.460 6.460 10 N -0.201 5.201 11 C -0.428 4.428 12 H 0.121 0.879 13 C -0.179 4.179 14 N -0.544 5.544 15 Si 0.756 3.244 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.194 1.194 19 N -0.350 5.350 20 C 0.290 3.710 21 O -0.407 6.407 22 C 0.034 3.966 23 H 0.150 0.850 24 C -0.217 4.217 25 N -0.133 5.133 26 C -0.080 4.080 27 C -0.307 4.307 28 C -0.143 4.143 29 N -0.106 5.106 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.115 0.885 37 H 0.033 0.967 38 H 0.106 0.894 39 H 0.065 0.935 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.241 0.759 43 H 0.099 0.901 44 H 0.089 0.911 45 H 0.109 0.891 46 H 0.185 0.815 47 H 0.163 0.837 48 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -16.648 4.979 12.815 21.591 hybrid contribution -0.171 -0.313 -0.834 0.907 sum -16.819 4.666 11.981 21.171 Atomic orbital electron populations 1.22142 0.94975 1.02229 1.02608 1.20968 0.93286 0.97728 0.83724 0.89438 1.22502 0.89376 1.00865 0.95949 1.61579 1.03017 1.12318 1.46976 1.22559 1.03119 0.88414 0.98564 1.21882 0.96431 0.97469 0.92853 1.19720 0.87666 0.84232 0.85553 1.90501 1.69955 1.54168 1.31359 1.41871 1.10397 1.42856 1.24986 1.19688 0.84942 1.27152 1.10985 0.87930 1.25254 1.00490 0.96727 0.95462 1.69608 1.37460 1.32930 1.14365 0.85870 0.81975 0.78972 0.77560 1.20388 1.20944 1.19407 1.45719 1.66374 1.14382 1.08539 1.20572 0.78113 0.87552 0.84759 1.90742 1.49592 1.15456 1.84893 1.21124 1.04076 0.88015 0.83389 0.84978 1.22145 0.98974 0.96220 1.04364 1.48205 1.07592 1.33954 1.23598 1.22364 0.94309 0.98858 0.92493 1.21432 0.96314 1.07019 1.05908 1.23873 0.95957 0.99106 0.95400 1.77449 1.08125 1.09847 1.15162 0.92220 0.92001 0.91565 0.90173 0.93437 0.92193 0.88529 0.96695 0.89435 0.93452 0.77541 0.91882 0.75872 0.90133 0.91103 0.89124 0.81517 0.83703 0.80133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.48 37.16 0.35 -1.04 16 2 C 0.15 1.61 2.35 -67.93 -0.16 1.45 16 3 H 0.09 1.18 6.23 -51.93 -0.32 0.86 16 4 C 0.04 0.46 4.52 -3.83 -0.02 0.44 16 5 N -0.52 -7.80 4.22 -244.38 -1.03 -8.83 16 6 C 0.02 0.35 8.96 60.06 0.54 0.89 16 7 C 0.04 0.74 5.45 -4.97 -0.03 0.72 16 8 C 0.44 10.02 7.48 -10.98 -0.08 9.94 16 9 O -0.58 -15.03 13.91 5.55 0.08 -14.95 16 10 N -0.56 -13.89 5.29 -10.96 -0.06 -13.95 16 11 C -0.30 -8.16 9.68 -14.94 -0.14 -8.31 16 12 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 13 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 14 N -0.90 -24.18 13.05 55.50 0.72 -23.46 16 15 Si 0.93 20.89 29.55 -169.99 -5.02 15.86 16 16 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 17 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 18 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 19 N -0.70 -7.61 4.69 -53.81 -0.25 -7.87 16 20 C 0.51 6.54 7.19 -10.99 -0.08 6.46 16 21 O -0.53 -8.96 16.08 5.55 0.09 -8.87 16 22 C 0.14 1.54 3.73 -69.08 -0.26 1.28 16 23 H 0.13 1.51 8.14 -51.93 -0.42 1.09 16 24 C -0.16 -1.05 8.73 37.16 0.32 -0.72 16 25 N -0.35 -4.55 3.02 -55.99 -0.17 -4.71 16 26 C 0.07 0.71 10.57 -17.23 -0.18 0.53 16 27 C -0.28 -2.95 10.80 -40.01 -0.43 -3.39 16 28 C 0.04 0.53 12.03 -17.37 -0.21 0.32 16 29 N -0.29 -4.31 12.58 30.62 0.39 -3.93 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.74 7.93 -51.93 -0.41 0.33 16 34 H 0.05 0.49 8.12 -51.93 -0.42 0.07 16 35 H 0.06 0.97 6.58 -51.93 -0.34 0.63 16 36 H 0.10 1.96 5.82 -51.93 -0.30 1.66 16 37 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.09 1.26 7.93 -51.93 -0.41 0.85 16 39 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 40 H 0.39 9.21 7.90 -40.82 -0.32 8.89 16 41 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 42 H 0.41 3.83 8.02 -40.82 -0.33 3.50 16 43 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.41 7.15 -51.93 -0.37 0.04 16 45 H 0.09 0.45 7.56 -51.93 -0.39 0.05 16 46 H 0.17 1.26 7.26 -52.49 -0.38 0.88 16 47 H 0.15 1.15 8.06 -52.49 -0.42 0.72 16 48 H 0.18 1.60 8.06 -52.49 -0.42 1.17 16 LS Contribution 399.25 15.07 6.02 6.02 Total: -1.00 -35.56 399.25 -7.04 -42.60 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: -7.32 Total: 13.03 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: -0.47 Total: 9.06 kcal Atomic # 7 Polarization: -62.35 SS G_CDS: -0.40 Total: -62.75 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: 0.17 Total: -23.82 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.56 -7.04 -42.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669777567.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.856 kcal (2) G-P(sol) polarization free energy of solvation -35.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds