Wall clock time and date at job start Tue Mar 31 2020 19:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47049 * 2 1 4 4 C 1.52997 * 109.47364 * 239.99800 * 2 1 3 5 5 N 1.46896 * 109.47142 * 185.00198 * 4 2 1 6 6 C 1.46894 * 111.00184 * 293.95156 * 5 4 2 7 7 C 1.46903 * 110.99982 * 169.99888 * 5 4 2 8 8 C 1.50701 * 109.47117 * 190.00013 * 7 5 4 9 9 O 1.21287 * 120.00074 * 359.97438 * 8 7 5 10 10 N 1.34781 * 120.00058 * 180.02562 * 8 7 5 11 11 C 1.37089 * 120.00057 * 180.02562 * 10 8 7 12 12 H 1.08002 * 120.00242 * 359.97438 * 11 10 8 13 13 C 1.38953 * 120.00124 * 180.02562 * 11 10 8 14 14 N 1.31408 * 119.99841 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99931 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.47100 * 89.99957 * 15 13 11 17 17 H 1.48505 * 109.46882 * 209.99146 * 15 13 11 18 18 H 1.48498 * 109.47343 * 329.99425 * 15 13 11 19 19 N 1.46504 * 109.46805 * 119.99617 * 2 1 3 20 20 C 1.34771 * 120.00493 * 275.00240 * 19 2 1 21 21 O 1.21288 * 119.99414 * 359.97438 * 20 19 2 22 22 C 1.50697 * 120.00375 * 180.02562 * 20 19 2 23 23 H 1.08994 * 109.47009 * 59.99944 * 22 20 19 24 24 C 1.53002 * 109.47160 * 299.99691 * 22 20 19 25 25 N 1.46502 * 109.47116 * 180.02562 * 22 20 19 26 26 C 1.34942 * 126.03991 * 84.97435 * 25 22 20 27 27 C 1.35316 * 107.74613 * 179.75096 * 26 25 22 28 28 C 1.39870 * 107.92161 * 0.39436 * 27 26 25 29 29 N 1.30836 * 108.20019 * 359.59732 * 28 27 26 30 30 H 1.09007 * 109.47230 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47614 * 300.00038 * 1 2 3 32 32 H 1.08997 * 109.46953 * 60.00267 * 1 2 3 33 33 H 1.09005 * 109.46840 * 305.00027 * 4 2 1 34 34 H 1.09001 * 109.47131 * 64.99791 * 4 2 1 35 35 H 1.09003 * 109.46806 * 59.99880 * 6 5 4 36 36 H 1.09002 * 109.47566 * 179.97438 * 6 5 4 37 37 H 1.08995 * 109.47507 * 300.00233 * 6 5 4 38 38 H 1.08998 * 109.47412 * 309.99809 * 7 5 4 39 39 H 1.08998 * 109.46807 * 69.99896 * 7 5 4 40 40 H 0.97006 * 119.99547 * 359.97438 * 10 8 7 41 41 H 0.97003 * 120.00168 * 180.02562 * 14 13 11 42 42 H 0.97003 * 119.99625 * 95.00170 * 19 2 1 43 43 H 1.08997 * 109.47230 * 180.02562 * 24 22 20 44 44 H 1.08999 * 109.46993 * 300.00355 * 24 22 20 45 45 H 1.09000 * 109.47031 * 59.99916 * 24 22 20 46 46 H 1.08002 * 126.12737 * 359.97438 * 26 25 22 47 47 H 1.07998 * 126.04386 * 180.27449 * 27 26 25 48 48 H 1.08002 * 125.90382 * 179.86983 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5040 -0.8267 -1.1903 6 6 4.1310 0.4992 -1.2719 7 6 4.0108 -1.7145 -2.2453 8 6 5.4725 -1.9938 -2.0076 9 8 6.0367 -1.5014 -1.0535 10 7 6.1531 -2.7900 -2.8558 11 6 7.4826 -3.0446 -2.6392 12 1 7.9848 -2.6068 -1.7892 13 6 8.1844 -3.8650 -3.5140 14 7 7.5735 -4.3973 -4.5485 15 14 9.9962 -4.2113 -3.2193 16 1 10.1371 -5.4190 -2.3667 17 1 10.6740 -4.4421 -4.5203 18 1 10.6178 -3.0481 -2.5368 19 7 2.0183 -0.6906 1.1963 20 6 2.1469 -0.0183 2.3572 21 8 1.8589 1.1587 2.4115 22 6 2.6497 -0.7285 3.5876 23 1 3.6490 -1.1202 3.3980 24 6 1.7061 -1.8827 3.9316 25 7 2.6982 0.2127 4.7092 26 6 1.6711 0.5290 5.5252 27 6 2.1252 1.4257 6.4312 28 6 3.4737 1.6725 6.1540 29 7 3.8192 0.9434 5.1240 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.6054 -1.7199 -1.2950 34 1 1.7517 -0.1584 -2.1369 35 1 3.7910 1.1138 -0.4383 36 1 5.2148 0.3922 -1.2255 37 1 3.8525 0.9756 -2.2118 38 1 3.4546 -2.6517 -2.2297 39 1 3.8858 -1.2339 -3.2156 40 1 5.7018 -3.1835 -3.6191 41 1 8.0633 -4.9703 -5.1590 42 1 2.2490 -1.6318 1.1527 43 1 2.0695 -2.3961 4.8217 44 1 0.7068 -1.4909 4.1211 45 1 1.6696 -2.5831 3.0972 46 1 0.6675 0.1342 5.4680 47 1 1.5478 1.8733 7.2266 48 1 4.1195 2.3451 6.6989 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001669777567.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:06 Heat of formation + Delta-G solvation = -6.501989 kcal Electronic energy + Delta-G solvation = -29511.774784 eV Core-core repulsion = 25410.020376 eV Total energy + Delta-G solvation = -4101.754409 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.25907 -40.90249 -40.26153 -38.37007 -36.14804 -35.65874 -35.50883 -33.26042 -32.19273 -30.98281 -30.14775 -29.49744 -28.03382 -26.66869 -25.93208 -24.11318 -22.85805 -21.97294 -21.46505 -20.95084 -20.87970 -19.83865 -18.72872 -18.20259 -17.77055 -17.05028 -16.71042 -16.56723 -16.30242 -16.15780 -15.67551 -15.62803 -15.30786 -15.16436 -14.98656 -14.61002 -14.43764 -14.14523 -13.86395 -13.67426 -13.57154 -13.45632 -13.36843 -13.20241 -13.12855 -12.89203 -12.79048 -12.67743 -12.60363 -12.45122 -12.39897 -12.13695 -11.74558 -11.60960 -11.44908 -11.15135 -10.36828 -10.27555 -10.06943 -9.98008 -9.50585 -9.23682 -8.45860 -5.93518 0.91813 1.37215 1.41273 1.45035 1.49359 1.53213 1.98856 2.08836 2.24391 2.28969 2.74084 3.21601 3.41543 3.46296 3.67857 3.77811 3.83184 3.98265 4.12566 4.15342 4.20013 4.33023 4.40001 4.52179 4.53710 4.57725 4.58372 4.63548 4.69078 4.73165 4.76878 4.80213 4.88302 5.01797 5.07155 5.14103 5.15618 5.28825 5.42147 5.49483 5.74413 5.86495 6.04160 6.08938 6.17376 6.51926 6.63062 6.78742 7.15516 7.16952 7.59772 8.16490 8.71436 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013118 B = 0.002539 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.909348 B =11024.764204 C =12403.940573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.148 3.852 3 H 0.056 0.944 4 C 0.047 3.953 5 N -0.528 5.528 6 C 0.032 3.968 7 C 0.058 3.942 8 C 0.441 3.559 9 O -0.616 6.616 10 N -0.575 5.575 11 C -0.329 4.329 12 H 0.076 0.924 13 C -0.012 4.012 14 N -0.920 5.920 15 Si 0.988 3.012 16 H -0.270 1.270 17 H -0.271 1.271 18 H -0.276 1.276 19 N -0.688 5.688 20 C 0.505 3.495 21 O -0.577 6.577 22 C 0.137 3.863 23 H 0.118 0.882 24 C -0.149 4.149 25 N -0.363 5.363 26 C 0.063 3.937 27 C -0.284 4.284 28 C 0.035 3.965 29 N -0.347 5.347 30 H 0.082 0.918 31 H 0.045 0.955 32 H 0.079 0.921 33 H 0.110 0.890 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.052 0.948 37 H 0.031 0.969 38 H 0.121 0.879 39 H 0.067 0.933 40 H 0.396 0.604 41 H 0.277 0.723 42 H 0.415 0.585 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.110 0.890 46 H 0.200 0.800 47 H 0.173 0.827 48 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.346 3.189 12.474 24.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.043 3.957 3 H 0.074 0.926 4 C -0.081 4.081 5 N -0.252 5.252 6 C -0.116 4.116 7 C -0.072 4.072 8 C 0.228 3.772 9 O -0.502 6.502 10 N -0.213 5.213 11 C -0.459 4.459 12 H 0.094 0.906 13 C -0.212 4.212 14 N -0.561 5.561 15 Si 0.812 3.188 16 H -0.196 1.196 17 H -0.196 1.196 18 H -0.201 1.201 19 N -0.340 5.340 20 C 0.290 3.710 21 O -0.457 6.457 22 C 0.031 3.969 23 H 0.136 0.864 24 C -0.207 4.207 25 N -0.145 5.145 26 C -0.083 4.083 27 C -0.313 4.313 28 C -0.150 4.150 29 N -0.168 5.168 30 H 0.101 0.899 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.128 0.872 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.050 0.950 38 H 0.139 0.861 39 H 0.085 0.915 40 H 0.230 0.770 41 H 0.086 0.914 42 H 0.252 0.748 43 H 0.106 0.894 44 H 0.102 0.898 45 H 0.129 0.871 46 H 0.217 0.783 47 H 0.190 0.810 48 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -19.038 3.591 12.503 23.058 hybrid contribution 0.520 0.175 -0.717 0.903 sum -18.518 3.767 11.786 22.271 Atomic orbital electron populations 1.22044 0.92628 1.03655 1.02513 1.20994 0.94972 0.96087 0.83671 0.92561 1.22610 0.86203 1.02903 0.96384 1.61492 1.05644 1.11222 1.46861 1.22304 1.00438 0.89571 0.99273 1.21768 0.92009 0.99493 0.93976 1.20863 0.90077 0.82182 0.84039 1.90491 1.71665 1.55093 1.32911 1.41928 1.09800 1.43824 1.25754 1.19590 0.86666 1.28549 1.11077 0.90643 1.25953 1.04110 0.96077 0.95020 1.69658 1.38779 1.33012 1.14635 0.85002 0.77364 0.78554 0.77878 1.19581 1.19607 1.20135 1.45711 1.65452 1.14690 1.08105 1.20939 0.77396 0.87035 0.85679 1.90713 1.51888 1.17386 1.85664 1.21306 1.04351 0.88741 0.82523 0.86397 1.22177 0.98345 0.94708 1.05474 1.48395 1.07639 1.34237 1.24215 1.22999 0.95133 0.98464 0.91675 1.21846 0.95864 1.06990 1.06614 1.24407 0.97260 0.98640 0.94733 1.77361 1.10358 1.11941 1.17140 0.89939 0.93574 0.90225 0.87155 0.91740 0.92618 0.92898 0.95043 0.86078 0.91544 0.76981 0.91373 0.74803 0.89400 0.89811 0.87104 0.78330 0.80995 0.78006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.48 71.98 0.68 -1.49 16 2 C 0.15 2.97 2.35 44.99 0.11 3.08 16 3 H 0.06 1.52 6.23 -2.39 -0.01 1.50 16 4 C 0.05 0.87 4.52 86.30 0.39 1.26 16 5 N -0.53 -15.14 4.22 -927.07 -3.92 -19.06 16 6 C 0.03 1.08 8.96 127.69 1.14 2.22 16 7 C 0.06 1.80 5.45 85.56 0.47 2.27 16 8 C 0.44 20.03 7.48 87.66 0.66 20.69 16 9 O -0.62 -33.21 13.91 -3.05 -0.04 -33.25 16 10 N -0.58 -28.57 5.29 -306.98 -1.62 -30.20 16 11 C -0.33 -18.44 9.68 84.04 0.81 -17.62 16 12 H 0.08 4.56 7.16 -2.91 -0.02 4.54 16 13 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 14 N -0.92 -48.84 13.05 21.66 0.28 -48.55 16 15 Si 0.99 42.85 29.55 68.60 2.03 44.88 16 16 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 17 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 18 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 19 N -0.69 -14.23 4.69 -442.54 -2.08 -16.30 16 20 C 0.50 13.07 7.19 87.66 0.63 13.70 16 21 O -0.58 -20.02 16.08 -3.06 -0.05 -20.07 16 22 C 0.14 3.01 3.73 44.24 0.17 3.17 16 23 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 24 C -0.15 -1.68 8.73 71.98 0.63 -1.05 16 25 N -0.36 -9.48 3.02 -331.07 -1.00 -10.48 16 26 C 0.06 1.30 10.57 83.54 0.88 2.18 16 27 C -0.28 -5.79 10.80 21.99 0.24 -5.55 16 28 C 0.04 0.87 12.03 85.24 1.03 1.89 16 29 N -0.35 -10.93 12.58 -57.02 -0.72 -11.65 16 30 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.11 1.48 7.93 -2.38 -0.02 1.46 16 34 H 0.06 1.06 8.12 -2.39 -0.02 1.04 16 35 H 0.06 1.87 6.58 -2.39 -0.02 1.85 16 36 H 0.05 2.23 5.82 -2.39 -0.01 2.22 16 37 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.12 2.99 7.93 -2.39 -0.02 2.98 16 39 H 0.07 1.85 8.12 -2.39 -0.02 1.83 16 40 H 0.40 18.55 7.90 -92.70 -0.73 17.82 16 41 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 42 H 0.41 7.02 8.02 -92.71 -0.74 6.27 16 43 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.08 0.75 7.15 -2.39 -0.02 0.73 16 45 H 0.11 0.79 7.56 -2.39 -0.02 0.77 16 46 H 0.20 2.53 7.26 -2.91 -0.02 2.51 16 47 H 0.17 2.37 8.06 -2.91 -0.02 2.35 16 48 H 0.20 3.61 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -81.70 399.25 0.69 -81.00 By element: Atomic # 1 Polarization: 39.59 SS G_CDS: -0.49 Total: 39.10 kcal Atomic # 6 Polarization: 16.29 SS G_CDS: 8.29 Total: 24.58 kcal Atomic # 7 Polarization: -127.20 SS G_CDS: -9.05 Total: -136.24 kcal Atomic # 8 Polarization: -53.23 SS G_CDS: -0.09 Total: -53.32 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -81.70 0.69 -81.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669777567.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.502 kcal (2) G-P(sol) polarization free energy of solvation -81.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds