Wall clock time and date at job start Tue Mar 31 2020 19:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47460 * 2 1 4 4 C 1.50698 * 109.47183 * 239.99634 * 2 1 3 5 5 O 1.21276 * 120.00239 * 240.00774 * 4 2 1 6 6 N 1.34779 * 119.99670 * 60.00041 * 4 2 1 7 7 C 1.46496 * 119.99965 * 179.97438 * 6 4 2 8 8 H 1.09001 * 109.47464 * 325.00834 * 7 6 4 9 9 C 1.53006 * 109.46995 * 85.00573 * 7 6 4 10 10 C 1.52999 * 109.47487 * 205.00106 * 7 6 4 11 11 N 1.46905 * 109.46969 * 54.99940 * 10 7 6 12 12 C 1.46904 * 110.99505 * 66.04539 * 11 10 7 13 13 C 1.46896 * 111.00081 * 189.99855 * 11 10 7 14 14 C 1.50701 * 109.46900 * 170.00155 * 13 11 10 15 15 O 1.21288 * 120.00195 * 0.02562 * 14 13 11 16 16 N 1.34778 * 119.99932 * 180.02562 * 14 13 11 17 17 C 1.37103 * 119.99728 * 180.02562 * 16 14 13 18 18 H 1.07996 * 120.00276 * 359.97438 * 17 16 14 19 19 C 1.38954 * 119.99631 * 179.97438 * 17 16 14 20 20 N 1.31410 * 120.00088 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00001 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47253 * 59.99352 * 21 19 17 23 23 H 1.48497 * 109.47512 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47051 * 299.99565 * 21 19 17 25 25 N 1.46501 * 109.46754 * 119.99910 * 2 1 3 26 26 C 1.34947 * 126.04054 * 34.71924 * 25 2 1 27 27 C 1.35318 * 107.74935 * 179.83773 * 26 25 2 28 28 C 1.39874 * 107.91911 * 0.41800 * 27 26 25 29 29 N 1.30844 * 108.20033 * 359.74241 * 28 27 26 30 30 H 1.09004 * 109.46709 * 300.00322 * 1 2 3 31 31 H 1.08994 * 109.46826 * 59.99559 * 1 2 3 32 32 H 1.08999 * 109.47460 * 180.02562 * 1 2 3 33 33 H 0.97003 * 120.00044 * 0.02562 * 6 4 2 34 34 H 1.09001 * 109.47002 * 299.99701 * 9 7 6 35 35 H 1.08993 * 109.46955 * 60.00138 * 9 7 6 36 36 H 1.09000 * 109.47050 * 179.97438 * 9 7 6 37 37 H 1.08997 * 109.47756 * 174.99813 * 10 7 6 38 38 H 1.09001 * 109.47317 * 295.00696 * 10 7 6 39 39 H 1.09001 * 109.46838 * 60.00381 * 12 11 10 40 40 H 1.08999 * 109.46807 * 180.02562 * 12 11 10 41 41 H 1.08993 * 109.47590 * 299.99783 * 12 11 10 42 42 H 1.09000 * 109.47532 * 289.99871 * 13 11 10 43 43 H 1.09002 * 109.46771 * 50.00659 * 13 11 10 44 44 H 0.96997 * 119.99913 * 359.97438 * 16 14 13 45 45 H 0.96996 * 119.99838 * 180.02562 * 20 19 17 46 46 H 1.08001 * 126.12650 * 359.97438 * 26 25 2 47 47 H 1.07995 * 126.04074 * 180.16021 * 27 26 25 48 48 H 1.07993 * 125.89860 * 179.71943 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7295 -1.6966 -1.1191 6 7 1.7067 -0.2500 -2.4545 7 6 2.1955 -0.9403 -3.6506 8 1 3.1948 -1.3322 -3.4612 9 6 1.2518 -2.0945 -3.9948 10 6 2.2468 0.0429 -4.8218 11 7 3.0569 1.2095 -4.4466 12 6 4.4623 0.8317 -4.2456 13 6 2.9370 2.2777 -5.4479 14 6 3.5743 3.5364 -4.9182 15 8 4.0792 3.5429 -3.8154 16 7 3.5833 4.6550 -5.6700 17 6 4.1636 5.8000 -5.1883 18 1 4.6131 5.8057 -4.2064 19 6 4.1732 6.9531 -5.9636 20 7 3.6267 6.9460 -7.1587 21 14 4.9632 8.5133 -5.3072 22 1 6.3986 8.2598 -5.0232 23 1 4.8426 9.5930 -6.3195 24 1 4.2769 8.9274 -4.0570 25 7 2.0183 -0.6906 1.1962 26 6 1.4373 -1.7526 1.7926 27 6 2.1965 -2.0928 2.8598 28 6 3.2735 -1.2025 2.9231 29 7 3.1676 -0.3615 1.9264 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.1494 0.5389 -2.5435 34 1 1.2153 -2.7950 -3.1605 35 1 0.2526 -1.7026 -4.1843 36 1 1.6152 -2.6078 -4.8850 37 1 2.6932 -0.4462 -5.6876 38 1 1.2358 0.3670 -5.0687 39 1 4.8612 0.4115 -5.1688 40 1 5.0394 1.7138 -3.9682 41 1 4.5288 0.0896 -3.4500 42 1 3.4407 1.9738 -6.3655 43 1 1.8834 2.4638 -5.6561 44 1 3.1799 4.6497 -6.5521 45 1 3.6338 7.7508 -7.7000 46 1 0.5301 -2.2444 1.4739 47 1 2.0028 -2.9054 3.5443 48 1 4.0568 -1.2081 3.6666 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669777569.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:10 Heat of formation + Delta-G solvation = 21.314713 kcal Electronic energy + Delta-G solvation = -29510.271016 eV Core-core repulsion = 25409.722829 eV Total energy + Delta-G solvation = -4100.548186 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.37756 -39.88830 -38.64667 -37.07500 -34.79756 -34.76660 -33.79933 -31.33432 -31.21632 -30.10527 -29.38683 -28.04390 -26.97009 -25.23583 -24.79790 -22.94259 -21.82335 -21.10419 -20.51631 -19.98182 -19.18105 -17.89546 -17.77904 -17.30929 -16.24269 -16.06324 -15.57129 -15.16220 -14.93608 -14.76419 -14.51520 -14.45835 -14.02078 -13.84386 -13.70888 -13.58620 -13.43036 -13.07955 -12.94786 -12.84381 -12.68372 -12.44566 -12.16956 -12.10050 -11.89942 -11.85737 -11.53197 -11.40327 -11.26580 -10.93770 -10.79062 -10.70270 -10.45873 -10.23644 -10.13613 -9.49143 -9.42067 -9.13657 -8.63939 -8.49801 -8.01568 -7.91708 -6.44227 -3.85036 1.79004 2.25834 2.47603 2.84208 3.13321 3.18393 3.24321 3.28723 3.86464 3.89781 4.20199 4.22026 4.45080 4.62669 4.67613 4.70619 4.87583 4.98139 5.05469 5.10166 5.13730 5.22687 5.26072 5.35919 5.44872 5.45288 5.50004 5.56158 5.65995 5.69413 5.72367 5.83954 5.90780 5.94398 5.94579 6.00169 6.24256 6.39315 6.55814 6.59057 6.87873 7.18437 7.29258 7.42433 7.52827 7.67570 8.03677 8.10221 8.59145 9.15795 9.51677 10.03570 10.73388 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013116 B = 0.002539 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.337355 B =11023.961564 C =12403.068203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.140 3.860 3 H 0.132 0.868 4 C 0.507 3.493 5 O -0.531 6.531 6 N -0.699 5.699 7 C 0.148 3.852 8 H 0.088 0.912 9 C -0.161 4.161 10 C 0.042 3.958 11 N -0.515 5.515 12 C 0.021 3.979 13 C 0.045 3.955 14 C 0.443 3.557 15 O -0.576 6.576 16 N -0.564 5.564 17 C -0.299 4.299 18 H 0.102 0.898 19 C 0.023 3.977 20 N -0.902 5.902 21 Si 0.930 3.070 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.273 1.273 25 N -0.351 5.351 26 C 0.065 3.935 27 C -0.277 4.277 28 C 0.043 3.957 29 N -0.286 5.286 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.406 0.594 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.048 0.952 38 H 0.080 0.920 39 H 0.015 0.985 40 H 0.096 0.904 41 H 0.059 0.941 42 H 0.047 0.953 43 H 0.087 0.913 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.168 0.832 47 H 0.145 0.855 48 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.544 -17.820 8.784 22.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.034 3.966 3 H 0.150 0.850 4 C 0.290 3.710 5 O -0.407 6.407 6 N -0.350 5.350 7 C 0.043 3.957 8 H 0.106 0.894 9 C -0.220 4.220 10 C -0.087 4.087 11 N -0.239 5.239 12 C -0.127 4.127 13 C -0.086 4.086 14 C 0.228 3.772 15 O -0.460 6.460 16 N -0.201 5.201 17 C -0.428 4.428 18 H 0.120 0.880 19 C -0.179 4.179 20 N -0.544 5.544 21 Si 0.757 3.243 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 N -0.133 5.133 26 C -0.081 4.081 27 C -0.306 4.306 28 C -0.143 4.143 29 N -0.106 5.106 30 H 0.099 0.901 31 H 0.109 0.891 32 H 0.089 0.911 33 H 0.241 0.759 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.066 0.934 38 H 0.098 0.902 39 H 0.033 0.967 40 H 0.115 0.885 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.106 0.894 44 H 0.225 0.775 45 H 0.082 0.918 46 H 0.185 0.815 47 H 0.163 0.837 48 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -9.412 -17.099 9.177 21.568 hybrid contribution -0.139 0.157 -0.869 0.894 sum -9.551 -16.942 8.308 21.149 Atomic orbital electron populations 1.22145 0.90673 1.03974 1.04912 1.21124 0.95964 0.98245 0.81277 0.84992 1.20567 0.80724 0.84926 0.84762 1.90739 1.37199 1.26239 1.86487 1.45719 1.53161 1.31687 1.04457 1.20968 0.98889 0.91771 0.84077 0.89441 1.22144 0.99593 0.98167 1.02050 1.22504 0.99100 0.91606 0.95486 1.61584 1.10491 1.06956 1.44863 1.22560 0.88482 1.02727 0.98887 1.21881 1.01481 0.92193 0.93075 1.19718 0.85776 0.84637 0.87054 1.90500 1.50047 1.84402 1.21055 1.41864 1.51547 1.09189 1.17480 1.19642 1.33297 0.87140 1.02767 0.87981 1.25253 0.97634 0.99552 0.95461 1.69599 1.44810 1.30132 1.09829 0.85928 0.79647 0.80404 0.78317 1.19918 1.20983 1.19866 1.48199 1.19458 1.24467 1.21222 1.22367 0.99779 0.90956 0.94952 1.21433 0.99334 1.06337 1.03542 1.23875 0.99190 0.94076 0.97208 1.77450 1.01947 1.24114 1.07068 0.90137 0.89120 0.91095 0.75869 0.92001 0.92224 0.91563 0.93437 0.90174 0.96695 0.88530 0.92193 0.93455 0.89436 0.77539 0.91825 0.81515 0.83703 0.80134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.05 8.73 37.16 0.32 -0.72 16 2 C 0.14 1.54 3.73 -69.08 -0.26 1.28 16 3 H 0.13 1.51 8.14 -51.93 -0.42 1.09 16 4 C 0.51 6.54 7.19 -10.99 -0.08 6.46 16 5 O -0.53 -8.96 16.08 5.56 0.09 -8.87 16 6 N -0.70 -7.62 4.69 -53.81 -0.25 -7.87 16 7 C 0.15 1.61 2.35 -67.93 -0.16 1.46 16 8 H 0.09 1.18 6.23 -51.93 -0.32 0.86 16 9 C -0.16 -1.39 9.48 37.16 0.35 -1.04 16 10 C 0.04 0.46 4.52 -3.82 -0.02 0.44 16 11 N -0.52 -7.80 4.22 -244.37 -1.03 -8.84 16 12 C 0.02 0.35 8.96 60.07 0.54 0.89 16 13 C 0.04 0.74 5.45 -4.98 -0.03 0.72 16 14 C 0.44 10.02 7.48 -10.98 -0.08 9.94 16 15 O -0.58 -15.04 13.91 5.55 0.08 -14.96 16 16 N -0.56 -13.89 5.29 -10.96 -0.06 -13.95 16 17 C -0.30 -8.19 9.68 -14.93 -0.14 -8.33 16 18 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 19 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 20 N -0.90 -24.19 13.05 55.50 0.72 -23.46 16 21 Si 0.93 20.90 29.55 -169.99 -5.02 15.87 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 N -0.35 -4.55 3.02 -55.99 -0.17 -4.72 16 26 C 0.07 0.71 10.58 -17.22 -0.18 0.53 16 27 C -0.28 -2.95 10.80 -40.01 -0.43 -3.39 16 28 C 0.04 0.52 12.03 -17.36 -0.21 0.32 16 29 N -0.29 -4.31 12.58 30.63 0.39 -3.93 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.09 0.45 7.56 -51.93 -0.39 0.05 16 32 H 0.07 0.41 7.15 -51.93 -0.37 0.04 16 33 H 0.41 3.83 8.02 -40.82 -0.33 3.51 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.05 0.49 8.12 -51.93 -0.42 0.07 16 38 H 0.08 0.74 7.93 -51.93 -0.41 0.33 16 39 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.10 1.96 5.82 -51.93 -0.30 1.66 16 41 H 0.06 0.97 6.58 -51.93 -0.34 0.63 16 42 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 43 H 0.09 1.26 7.93 -51.93 -0.41 0.85 16 44 H 0.39 9.21 7.90 -40.82 -0.32 8.89 16 45 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 46 H 0.17 1.26 7.25 -52.49 -0.38 0.88 16 47 H 0.15 1.15 8.06 -52.49 -0.42 0.72 16 48 H 0.18 1.60 8.06 -52.49 -0.42 1.17 16 LS Contribution 399.25 15.07 6.02 6.02 Total: -1.00 -35.54 399.25 -7.04 -42.58 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: -7.32 Total: 13.08 kcal Atomic # 6 Polarization: 9.52 SS G_CDS: -0.47 Total: 9.05 kcal Atomic # 7 Polarization: -62.36 SS G_CDS: -0.40 Total: -62.76 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: 0.17 Total: -23.83 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.54 -7.04 -42.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669777569.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.890 kcal (2) G-P(sol) polarization free energy of solvation -35.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds