Wall clock time and date at job start Tue Mar 31 2020 19:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46626 * 119.99699 * 2 1 3 5 5 N 1.46905 * 109.46991 * 174.99948 * 4 2 1 6 6 C 1.46905 * 110.99887 * 66.04513 * 5 4 2 7 7 C 1.46898 * 111.00116 * 190.00154 * 5 4 2 8 8 C 1.50704 * 109.46934 * 169.99917 * 7 5 4 9 9 O 1.21293 * 120.00291 * 0.02562 * 8 7 5 10 10 N 1.34777 * 120.00060 * 179.97438 * 8 7 5 11 11 C 1.37092 * 120.00167 * 180.02562 * 10 8 7 12 12 H 1.07999 * 119.99997 * 0.02562 * 11 10 8 13 13 C 1.38949 * 120.00180 * 179.97438 * 11 10 8 14 14 N 1.31414 * 120.00060 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00101 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47254 * 90.00487 * 15 13 11 17 17 H 1.48507 * 109.47034 * 210.00415 * 15 13 11 18 18 H 1.48500 * 109.47367 * 330.00453 * 15 13 11 19 19 N 1.46492 * 109.47363 * 239.99860 * 2 1 3 20 20 C 1.34781 * 119.99920 * 84.99933 * 19 2 1 21 21 O 1.21274 * 119.99803 * 0.02562 * 20 19 2 22 22 C 1.50697 * 119.99747 * 180.02562 * 20 19 2 23 23 H 1.08998 * 109.47252 * 60.00349 * 22 20 19 24 24 C 1.53003 * 109.47381 * 299.99890 * 22 20 19 25 25 N 1.46507 * 109.47043 * 180.02562 * 22 20 19 26 26 C 1.34950 * 126.03584 * 84.71603 * 25 22 20 27 27 C 1.35319 * 107.74394 * 179.84112 * 26 25 22 28 28 C 1.39868 * 107.92042 * 0.42337 * 27 26 25 29 29 N 1.30844 * 108.20068 * 359.73720 * 28 27 26 30 30 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 31 31 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 32 32 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47903 * 294.99740 * 4 2 1 34 34 H 1.09002 * 109.47016 * 55.00506 * 4 2 1 35 35 H 1.09002 * 109.46369 * 60.00474 * 6 5 4 36 36 H 1.08995 * 109.47254 * 179.97438 * 6 5 4 37 37 H 1.08999 * 109.47184 * 300.00769 * 6 5 4 38 38 H 1.08994 * 109.47398 * 289.99832 * 7 5 4 39 39 H 1.09001 * 109.47121 * 50.00145 * 7 5 4 40 40 H 0.97001 * 119.99480 * 0.02562 * 10 8 7 41 41 H 0.96997 * 120.00572 * 179.97438 * 14 13 11 42 42 H 0.96998 * 120.00176 * 265.00572 * 19 2 1 43 43 H 1.08998 * 109.47302 * 300.00429 * 24 22 20 44 44 H 1.09006 * 109.46570 * 60.00196 * 24 22 20 45 45 H 1.09004 * 109.47348 * 180.02562 * 24 22 20 46 46 H 1.07998 * 126.12742 * 359.97438 * 26 25 22 47 47 H 1.07995 * 126.04056 * 180.15544 * 27 26 25 48 48 H 1.07995 * 125.90432 * 179.71582 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5040 -0.8267 1.1905 6 6 4.1310 0.4993 1.2721 7 6 4.0107 -1.7144 2.2456 8 6 5.4724 -1.9938 2.0080 9 8 6.0367 -1.5014 1.0539 10 7 6.1529 -2.7899 2.8563 11 6 7.4827 -3.0437 2.6404 12 1 7.9852 -2.6053 1.7909 13 6 8.1844 -3.8640 3.5153 14 7 7.5732 -4.3971 4.5493 15 14 9.9966 -4.2092 3.2215 16 1 10.8150 -3.1849 3.9189 17 1 10.3356 -5.5559 3.7477 18 1 10.2799 -4.1612 1.7646 19 7 2.0184 -0.6906 -1.1961 20 6 2.1472 -0.0182 -2.3571 21 8 1.8591 1.1586 -2.4114 22 6 2.6490 -0.7288 -3.5876 23 1 1.9761 -1.5506 -3.8325 24 6 4.0515 -1.2798 -3.3221 25 7 2.6990 0.2127 -4.7090 26 6 3.7126 1.0577 -4.9916 27 6 3.3740 1.7506 -6.1035 28 6 2.1061 1.3210 -6.5089 29 7 1.7005 0.3992 -5.6736 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7516 -0.1583 2.1370 34 1 1.6053 -1.7198 1.2952 35 1 3.8524 0.9757 2.2120 36 1 5.2148 0.3922 1.2268 37 1 3.7911 1.1139 0.4385 38 1 3.8857 -1.2338 3.2159 39 1 3.4544 -2.6516 2.2300 40 1 5.7017 -3.1833 3.6195 41 1 8.0629 -4.9700 5.1598 42 1 2.2491 -1.6317 -1.1525 43 1 4.7244 -0.4580 -3.0773 44 1 4.0146 -1.9802 -2.4877 45 1 4.4146 -1.7934 -4.2124 46 1 4.6305 1.1607 -4.4319 47 1 3.9746 2.5052 -6.5894 48 1 1.5566 1.6872 -7.3634 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669777570.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:12 Heat of formation + Delta-G solvation = 20.168701 kcal Electronic energy + Delta-G solvation = -29668.983451 eV Core-core repulsion = 25568.385570 eV Total energy + Delta-G solvation = -4100.597881 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.35874 -39.88428 -38.67242 -37.09010 -34.80919 -34.70611 -33.83096 -31.34894 -31.22733 -30.08738 -29.28296 -28.07091 -26.98644 -25.18864 -24.79050 -22.92962 -21.82562 -21.09123 -20.51337 -19.95581 -19.21623 -17.92227 -17.76517 -17.23826 -16.27240 -16.16116 -15.46869 -15.14266 -14.94730 -14.79177 -14.53265 -14.33779 -14.09687 -13.88966 -13.62961 -13.58723 -13.50178 -12.94711 -12.87662 -12.67555 -12.55055 -12.46608 -12.19886 -12.07928 -11.91259 -11.76056 -11.55866 -11.43405 -11.30274 -10.98835 -10.80402 -10.74412 -10.44152 -10.27639 -10.12562 -9.53545 -9.40093 -9.13443 -8.62109 -8.53159 -8.05145 -7.95279 -6.47612 -3.88594 1.80324 2.27227 2.48647 2.84755 3.13040 3.14485 3.22435 3.27527 3.83077 3.86741 4.17729 4.30655 4.50493 4.61738 4.68249 4.82253 4.93067 4.96989 5.04856 5.14101 5.20298 5.34189 5.36545 5.41243 5.44939 5.51485 5.52107 5.64097 5.66829 5.71469 5.84970 5.87953 5.90026 5.91784 5.98544 6.01916 6.20698 6.39547 6.50139 6.59851 6.89915 7.15169 7.25742 7.42678 7.49360 7.66493 8.00062 8.10523 8.55279 9.12167 9.48185 9.99527 10.70007 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013561 B = 0.002610 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.221722 B =10726.257589 C =12267.307118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.149 3.851 3 H 0.088 0.912 4 C 0.042 3.958 5 N -0.514 5.514 6 C 0.021 3.979 7 C 0.044 3.956 8 C 0.444 3.556 9 O -0.578 6.578 10 N -0.564 5.564 11 C -0.299 4.299 12 H 0.103 0.897 13 C 0.023 3.977 14 N -0.901 5.901 15 Si 0.929 3.071 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.269 1.269 19 N -0.699 5.699 20 C 0.506 3.494 21 O -0.531 6.531 22 C 0.144 3.856 23 H 0.125 0.875 24 C -0.160 4.160 25 N -0.352 5.352 26 C 0.073 3.927 27 C -0.279 4.279 28 C 0.045 3.955 29 N -0.296 5.296 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.048 0.952 34 H 0.080 0.920 35 H 0.014 0.986 36 H 0.096 0.904 37 H 0.059 0.941 38 H 0.047 0.953 39 H 0.087 0.913 40 H 0.392 0.608 41 H 0.272 0.728 42 H 0.406 0.594 43 H 0.075 0.925 44 H 0.097 0.903 45 H 0.077 0.923 46 H 0.171 0.829 47 H 0.146 0.854 48 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.655 5.858 -11.306 17.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.044 3.956 3 H 0.106 0.894 4 C -0.087 4.087 5 N -0.238 5.238 6 C -0.127 4.127 7 C -0.087 4.087 8 C 0.229 3.771 9 O -0.462 6.462 10 N -0.200 5.200 11 C -0.428 4.428 12 H 0.121 0.879 13 C -0.179 4.179 14 N -0.543 5.543 15 Si 0.756 3.244 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.194 1.194 19 N -0.351 5.351 20 C 0.289 3.711 21 O -0.407 6.407 22 C 0.037 3.963 23 H 0.142 0.858 24 C -0.218 4.218 25 N -0.134 5.134 26 C -0.073 4.073 27 C -0.308 4.308 28 C -0.142 4.142 29 N -0.117 5.117 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.098 0.902 35 H 0.033 0.967 36 H 0.115 0.885 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.106 0.894 40 H 0.225 0.775 41 H 0.082 0.918 42 H 0.241 0.759 43 H 0.094 0.906 44 H 0.115 0.885 45 H 0.096 0.904 46 H 0.188 0.812 47 H 0.164 0.836 48 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -13.214 5.795 -11.857 18.676 hybrid contribution 1.154 0.043 1.206 1.670 sum -12.061 5.838 -10.651 17.117 Atomic orbital electron populations 1.22155 0.95008 1.02299 1.02636 1.20957 0.93324 0.97640 0.83690 0.89441 1.22508 0.89313 1.00926 0.95964 1.61588 1.03044 1.12243 1.46929 1.22560 1.03037 0.88474 0.98589 1.21886 0.96425 0.97503 0.92879 1.19701 0.87637 0.84214 0.85557 1.90481 1.69983 1.54297 1.31427 1.41876 1.10385 1.42789 1.24981 1.19674 0.84904 1.27199 1.11055 0.87930 1.25261 1.00489 0.96686 0.95483 1.69605 1.37423 1.32882 1.14356 0.85871 0.82056 0.77604 0.78843 1.20430 1.20915 1.19394 1.45722 1.66380 1.14399 1.08551 1.20611 0.78134 0.87644 0.84694 1.90738 1.49586 1.15639 1.84746 1.21130 1.01335 0.90779 0.83020 0.85766 1.22164 0.92561 1.02851 1.04219 1.48213 1.13292 1.30731 1.21174 1.22470 0.94563 0.92557 0.97718 1.21441 0.99436 1.08511 1.01430 1.23822 0.95599 0.95728 0.99046 1.77306 1.11737 1.21275 1.01335 0.91567 0.91950 0.92213 0.93421 0.90158 0.96726 0.88547 0.92221 0.93468 0.89436 0.77530 0.91843 0.75867 0.90604 0.88466 0.90436 0.81215 0.83649 0.80223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 9.48 37.16 0.35 -1.16 16 2 C 0.15 1.62 2.35 -67.93 -0.16 1.46 16 3 H 0.09 1.15 6.23 -51.93 -0.32 0.82 16 4 C 0.04 0.45 4.52 -3.82 -0.02 0.43 16 5 N -0.51 -7.35 4.22 -244.37 -1.03 -8.39 16 6 C 0.02 0.33 8.96 60.07 0.54 0.86 16 7 C 0.04 0.71 5.45 -4.98 -0.03 0.68 16 8 C 0.44 9.63 7.47 -10.98 -0.08 9.55 16 9 O -0.58 -14.29 13.91 5.55 0.08 -14.21 16 10 N -0.56 -13.49 5.29 -10.96 -0.06 -13.55 16 11 C -0.30 -7.96 9.68 -14.94 -0.14 -8.11 16 12 H 0.10 2.87 7.16 -52.49 -0.38 2.50 16 13 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 14 N -0.90 -23.78 13.05 55.50 0.72 -23.05 16 15 Si 0.93 20.41 29.55 -169.99 -5.02 15.39 16 16 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 17 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 18 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 19 N -0.70 -7.59 4.69 -53.81 -0.25 -7.85 16 20 C 0.51 6.52 7.19 -10.98 -0.08 6.44 16 21 O -0.53 -8.96 16.07 5.56 0.09 -8.87 16 22 C 0.14 1.58 3.73 -69.08 -0.26 1.32 16 23 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 24 C -0.16 -1.53 8.73 37.16 0.32 -1.20 16 25 N -0.35 -4.57 3.02 -55.99 -0.17 -4.74 16 26 C 0.07 0.87 10.57 -17.22 -0.18 0.69 16 27 C -0.28 -3.12 10.80 -40.01 -0.43 -3.55 16 28 C 0.04 0.52 12.03 -17.36 -0.21 0.31 16 29 N -0.30 -4.15 12.58 30.62 0.39 -3.76 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.48 8.12 -51.93 -0.42 0.06 16 34 H 0.08 0.74 7.93 -51.93 -0.41 0.33 16 35 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 36 H 0.10 1.82 5.82 -51.93 -0.30 1.52 16 37 H 0.06 0.89 6.58 -51.93 -0.34 0.54 16 38 H 0.05 0.71 8.12 -51.93 -0.42 0.29 16 39 H 0.09 1.22 7.93 -51.93 -0.41 0.81 16 40 H 0.39 9.01 7.90 -40.82 -0.32 8.69 16 41 H 0.27 6.80 8.31 -40.82 -0.34 6.47 16 42 H 0.41 3.81 8.02 -40.82 -0.33 3.48 16 43 H 0.07 0.80 7.16 -51.93 -0.37 0.43 16 44 H 0.10 0.90 7.56 -51.93 -0.39 0.51 16 45 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.17 1.69 7.27 -52.49 -0.38 1.31 16 47 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 48 H 0.18 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 399.25 15.07 6.02 6.02 Total: -1.00 -33.82 399.25 -7.04 -40.85 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: -7.32 Total: 13.94 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: -0.47 Total: 8.21 kcal Atomic # 7 Polarization: -60.93 SS G_CDS: -0.40 Total: -61.33 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: 0.17 Total: -23.08 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.82 -7.04 -40.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669777570.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.022 kcal (2) G-P(sol) polarization free energy of solvation -33.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds