Wall clock time and date at job start Tue Mar 31 2020 19:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46809 * 2 1 4 4 C 1.53002 * 109.46939 * 240.00363 * 2 1 3 5 5 N 1.46904 * 109.46930 * 184.99866 * 4 2 1 6 6 C 1.46907 * 110.99785 * 293.95392 * 5 4 2 7 7 C 1.46901 * 110.99767 * 170.00489 * 5 4 2 8 8 C 1.50704 * 109.47054 * 190.00179 * 7 5 4 9 9 O 1.21292 * 119.99751 * 359.97438 * 8 7 5 10 10 N 1.34773 * 119.99885 * 179.97438 * 8 7 5 11 11 C 1.37097 * 119.99662 * 179.97438 * 10 8 7 12 12 H 1.08009 * 120.00204 * 359.97438 * 11 10 8 13 13 C 1.38948 * 120.00020 * 180.02562 * 11 10 8 14 14 N 1.31417 * 120.00234 * 179.97438 * 13 11 10 15 15 Si 1.86804 * 119.99997 * 359.97438 * 13 11 10 16 16 H 1.48491 * 109.47046 * 90.00042 * 15 13 11 17 17 H 1.48501 * 109.47081 * 210.00315 * 15 13 11 18 18 H 1.48499 * 109.46760 * 330.00109 * 15 13 11 19 19 N 1.46496 * 109.47271 * 120.00636 * 2 1 3 20 20 C 1.34775 * 119.99642 * 275.00130 * 19 2 1 21 21 O 1.21279 * 120.00300 * 359.97438 * 20 19 2 22 22 C 1.50703 * 119.99773 * 180.02562 * 20 19 2 23 23 H 1.09004 * 109.47113 * 299.99819 * 22 20 19 24 24 C 1.53002 * 109.47292 * 59.99683 * 22 20 19 25 25 N 1.46506 * 109.47289 * 179.97438 * 22 20 19 26 26 C 1.34945 * 126.03724 * 274.99978 * 25 22 20 27 27 C 1.35316 * 107.74749 * 179.97438 * 26 25 22 28 28 C 1.39874 * 107.91714 * 359.97438 * 27 26 25 29 29 N 1.30839 * 108.20373 * 359.74525 * 28 27 26 30 30 H 1.09004 * 109.47249 * 59.99950 * 1 2 3 31 31 H 1.09007 * 109.47219 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47043 * 299.99042 * 1 2 3 33 33 H 1.08995 * 109.47329 * 305.00310 * 4 2 1 34 34 H 1.09003 * 109.47088 * 64.99666 * 4 2 1 35 35 H 1.08998 * 109.47003 * 60.00237 * 6 5 4 36 36 H 1.09000 * 109.46545 * 180.02562 * 6 5 4 37 37 H 1.08999 * 109.47156 * 300.00121 * 6 5 4 38 38 H 1.09003 * 109.47200 * 309.99675 * 7 5 4 39 39 H 1.08991 * 109.47512 * 69.99887 * 7 5 4 40 40 H 0.96994 * 120.00175 * 359.97438 * 10 8 7 41 41 H 0.97000 * 120.00003 * 180.02562 * 14 13 11 42 42 H 0.96998 * 120.00192 * 94.99655 * 19 2 1 43 43 H 1.09004 * 109.46930 * 60.00025 * 24 22 20 44 44 H 1.09004 * 109.47059 * 179.97438 * 24 22 20 45 45 H 1.08992 * 109.47060 * 300.00111 * 24 22 20 46 46 H 1.07999 * 126.12470 * 359.96068 * 26 25 22 47 47 H 1.07996 * 126.04265 * 180.02562 * 27 26 25 48 48 H 1.08001 * 125.89833 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5040 -0.8266 -1.1905 6 6 4.1310 0.4995 -1.2720 7 6 4.0107 -1.7142 -2.2457 8 6 5.4724 -1.9936 -2.0081 9 8 6.0367 -1.5013 -1.0539 10 7 6.1526 -2.7904 -2.8559 11 6 7.4825 -3.0442 -2.6400 12 1 7.9852 -2.6052 -1.7908 13 6 8.1840 -3.8652 -3.5143 14 7 9.4589 -4.1081 -3.3077 15 14 7.3149 -4.6240 -4.9835 16 1 7.4227 -3.7098 -6.1487 17 1 7.9479 -5.9257 -5.3152 18 1 5.8829 -4.8395 -4.6544 19 7 2.0184 -0.6907 1.1960 20 6 2.1470 -0.0184 2.3570 21 8 1.8590 1.1584 2.4115 22 6 2.6500 -0.7288 3.5873 23 1 1.9778 -1.5512 3.8323 24 6 4.0527 -1.2788 3.3211 25 7 2.6997 0.2126 4.7088 26 6 3.7150 1.0544 4.9942 27 6 3.3738 1.7513 6.1028 28 6 2.1062 1.3209 6.5084 29 7 1.6987 0.4026 5.6702 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8901 33 1 1.6053 -1.7197 -1.2953 34 1 1.7515 -0.1582 -2.1370 35 1 3.7910 1.1139 -0.4384 36 1 5.2147 0.3923 -1.2267 37 1 3.8523 0.9760 -2.2119 38 1 3.4545 -2.6515 -2.2302 39 1 3.8857 -1.2335 -3.2159 40 1 5.7013 -3.1844 -3.6188 41 1 9.9487 -4.6810 -3.9183 42 1 2.2490 -1.6319 1.1524 43 1 4.7249 -0.4564 3.0761 44 1 4.4166 -1.7922 4.2111 45 1 4.0161 -1.9790 2.4867 46 1 4.6352 1.1540 4.4377 47 1 3.9736 2.5068 6.5881 48 1 1.5569 1.6863 7.3635 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669777572.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:15 Heat of formation + Delta-G solvation = 27.456928 kcal Electronic energy + Delta-G solvation = -29712.967900 eV Core-core repulsion = 25612.686061 eV Total energy + Delta-G solvation = -4100.281840 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.36404 -39.91941 -38.83154 -37.20048 -34.87706 -34.71744 -33.89402 -31.74483 -31.30811 -30.08981 -29.29306 -28.27413 -27.05455 -25.20428 -24.74034 -22.88480 -21.83115 -21.09167 -20.55663 -19.97103 -19.41789 -18.33167 -17.78341 -17.25529 -16.29997 -16.22306 -15.51369 -15.19578 -15.08930 -14.87389 -14.65568 -14.37194 -14.12992 -13.93111 -13.63397 -13.60755 -13.31466 -12.96740 -12.88782 -12.71708 -12.56398 -12.48592 -12.47374 -12.21917 -12.07841 -11.91409 -11.75416 -11.55348 -11.42917 -11.09748 -10.86520 -10.74781 -10.65666 -10.14475 -10.03956 -9.60294 -9.40673 -9.17053 -8.67293 -8.61035 -8.25199 -8.08144 -6.37301 -3.88998 1.79949 2.26469 2.46457 2.84790 2.96408 3.01137 3.10008 3.11723 3.66058 3.77770 4.04229 4.29300 4.47515 4.60477 4.62253 4.71003 4.82360 4.92657 4.96360 5.08788 5.15946 5.28878 5.34140 5.35691 5.40662 5.47360 5.50111 5.51566 5.56104 5.71454 5.77178 5.78959 5.81058 5.87808 5.89895 5.97521 5.98699 6.35640 6.44114 6.59669 6.89576 7.03233 7.16048 7.39522 7.51775 7.66219 8.07684 8.07917 8.53378 8.88766 9.35846 9.76150 10.75679 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015360 B = 0.002591 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.497999 B =10802.885334 C =12058.151915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.149 3.851 3 H 0.088 0.912 4 C 0.042 3.958 5 N -0.514 5.514 6 C 0.020 3.980 7 C 0.041 3.959 8 C 0.452 3.548 9 O -0.559 6.559 10 N -0.591 5.591 11 C -0.305 4.305 12 H 0.120 0.880 13 C 0.042 3.958 14 N -0.880 5.880 15 Si 0.879 3.121 16 H -0.271 1.271 17 H -0.276 1.276 18 H -0.270 1.270 19 N -0.700 5.700 20 C 0.506 3.494 21 O -0.531 6.531 22 C 0.144 3.856 23 H 0.124 0.876 24 C -0.160 4.160 25 N -0.353 5.353 26 C 0.073 3.927 27 C -0.279 4.279 28 C 0.045 3.955 29 N -0.296 5.296 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.048 0.952 35 H 0.061 0.939 36 H 0.097 0.903 37 H 0.015 0.985 38 H 0.089 0.911 39 H 0.049 0.951 40 H 0.370 0.630 41 H 0.274 0.726 42 H 0.406 0.594 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.096 0.904 46 H 0.171 0.829 47 H 0.146 0.854 48 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.216 5.430 8.645 20.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.044 3.956 3 H 0.106 0.894 4 C -0.087 4.087 5 N -0.238 5.238 6 C -0.128 4.128 7 C -0.090 4.090 8 C 0.238 3.762 9 O -0.441 6.441 10 N -0.230 5.230 11 C -0.433 4.433 12 H 0.137 0.863 13 C -0.161 4.161 14 N -0.520 5.520 15 Si 0.706 3.294 16 H -0.197 1.197 17 H -0.202 1.202 18 H -0.195 1.195 19 N -0.351 5.351 20 C 0.289 3.711 21 O -0.406 6.406 22 C 0.038 3.962 23 H 0.142 0.858 24 C -0.218 4.218 25 N -0.134 5.134 26 C -0.073 4.073 27 C -0.308 4.308 28 C -0.142 4.142 29 N -0.117 5.117 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.115 0.885 37 H 0.034 0.966 38 H 0.107 0.893 39 H 0.067 0.933 40 H 0.202 0.798 41 H 0.084 0.916 42 H 0.241 0.759 43 H 0.094 0.906 44 H 0.096 0.904 45 H 0.115 0.885 46 H 0.188 0.812 47 H 0.164 0.836 48 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -17.643 5.402 9.284 20.656 hybrid contribution 0.030 -0.215 -2.006 2.017 sum -17.613 5.187 7.278 19.751 Atomic orbital electron populations 1.22156 0.94982 1.02296 1.02673 1.20951 0.93346 0.97663 0.83658 0.89390 1.22512 0.89127 1.00958 0.96090 1.61584 1.03194 1.12347 1.46693 1.22580 1.03064 0.88374 0.98759 1.21922 0.96194 0.97745 0.93140 1.19603 0.87546 0.83778 0.85283 1.90524 1.69780 1.53137 1.30644 1.42222 1.10947 1.44607 1.25223 1.19407 0.82993 1.28098 1.12847 0.86271 1.25044 0.95564 0.97403 0.98139 1.69619 1.07500 1.37235 1.37666 0.86681 0.79485 0.79992 0.83263 1.19681 1.20159 1.19514 1.45718 1.66472 1.14395 1.08554 1.20626 0.78099 0.87645 0.84692 1.90741 1.49536 1.15630 1.84733 1.21128 1.01342 0.90775 0.83000 0.85783 1.22165 0.92527 1.02873 1.04250 1.48210 1.13077 1.30862 1.21299 1.22475 0.94554 0.92504 0.97770 1.21446 0.99444 1.08386 1.01506 1.23826 0.95620 0.95760 0.98981 1.77305 1.11660 1.21348 1.01357 0.91582 0.92226 0.91891 0.90146 0.93373 0.92035 0.88484 0.96613 0.89302 0.93334 0.79761 0.91573 0.75875 0.90567 0.90383 0.88491 0.81183 0.83630 0.80219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.48 37.16 0.35 -1.08 16 2 C 0.15 1.54 2.35 -67.93 -0.16 1.38 16 3 H 0.09 1.11 6.23 -51.93 -0.32 0.79 16 4 C 0.04 0.42 4.52 -3.82 -0.02 0.40 16 5 N -0.51 -6.96 4.22 -244.36 -1.03 -7.99 16 6 C 0.02 0.29 8.96 60.07 0.54 0.83 16 7 C 0.04 0.61 5.45 -4.97 -0.03 0.58 16 8 C 0.45 9.39 7.47 -10.99 -0.08 9.30 16 9 O -0.56 -13.63 13.91 5.55 0.08 -13.55 16 10 N -0.59 -13.20 5.09 -10.96 -0.06 -13.26 16 11 C -0.30 -8.23 10.16 -14.93 -0.15 -8.38 16 12 H 0.12 3.70 7.39 -52.48 -0.39 3.31 16 13 C 0.04 1.10 5.50 -17.47 -0.10 1.01 16 14 N -0.88 -25.01 13.96 55.50 0.77 -24.23 16 15 Si 0.88 18.64 27.74 -169.99 -4.71 13.93 16 16 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 17 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 18 H -0.27 -5.15 6.52 56.52 0.37 -4.78 16 19 N -0.70 -7.32 4.69 -53.81 -0.25 -7.58 16 20 C 0.51 6.39 7.19 -10.98 -0.08 6.31 16 21 O -0.53 -8.82 16.08 5.56 0.09 -8.73 16 22 C 0.14 1.56 3.73 -69.08 -0.26 1.30 16 23 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 24 C -0.16 -1.52 8.73 37.16 0.32 -1.20 16 25 N -0.35 -4.54 3.02 -55.99 -0.17 -4.71 16 26 C 0.07 0.87 10.57 -17.22 -0.18 0.69 16 27 C -0.28 -3.11 10.80 -40.01 -0.43 -3.54 16 28 C 0.04 0.52 12.03 -17.36 -0.21 0.31 16 29 N -0.30 -4.13 12.58 30.63 0.39 -3.74 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.67 7.93 -51.93 -0.41 0.26 16 34 H 0.05 0.44 8.12 -51.93 -0.42 0.02 16 35 H 0.06 0.88 6.58 -51.93 -0.34 0.54 16 36 H 0.10 1.78 5.82 -51.93 -0.30 1.48 16 37 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 38 H 0.09 1.10 7.93 -51.93 -0.41 0.69 16 39 H 0.05 0.65 8.12 -51.93 -0.42 0.23 16 40 H 0.37 7.26 5.76 -40.82 -0.24 7.03 16 41 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.41 3.63 8.02 -40.82 -0.33 3.30 16 43 H 0.08 0.81 7.15 -51.93 -0.37 0.44 16 44 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.10 0.89 7.56 -51.93 -0.39 0.49 16 46 H 0.17 1.69 7.26 -52.49 -0.38 1.31 16 47 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 48 H 0.18 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 396.13 15.07 5.97 5.97 Total: -1.00 -35.16 396.13 -6.69 -41.85 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: -7.28 Total: 14.14 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: -0.48 Total: 7.91 kcal Atomic # 7 Polarization: -61.16 SS G_CDS: -0.35 Total: -61.51 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: 0.17 Total: -22.29 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -4.71 Total: 13.93 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.16 -6.69 -41.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669777572.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.303 kcal (2) G-P(sol) polarization free energy of solvation -35.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds