Wall clock time and date at job start Tue Mar 31 2020 19:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47140 * 2 1 4 4 C 1.53003 * 109.46786 * 240.00316 * 2 1 3 5 5 N 1.46905 * 109.47071 * 184.99740 * 4 2 1 6 6 C 1.46899 * 111.00223 * 293.95368 * 5 4 2 7 7 C 1.46895 * 110.99817 * 169.99925 * 5 4 2 8 8 C 1.50704 * 109.46841 * 190.00065 * 7 5 4 9 9 O 1.21295 * 120.00179 * 0.02562 * 8 7 5 10 10 N 1.34776 * 120.00102 * 179.97438 * 8 7 5 11 11 C 1.37101 * 120.00386 * 180.02562 * 10 8 7 12 12 H 1.07998 * 119.99369 * 0.02562 * 11 10 8 13 13 C 1.38946 * 120.00070 * 180.02562 * 11 10 8 14 14 N 1.31413 * 120.00138 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99921 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47347 * 89.99550 * 15 13 11 17 17 H 1.48500 * 109.47012 * 209.99657 * 15 13 11 18 18 H 1.48496 * 109.46790 * 329.99398 * 15 13 11 19 19 N 1.46496 * 109.47564 * 120.00408 * 2 1 3 20 20 C 1.34777 * 119.99875 * 275.00190 * 19 2 1 21 21 O 1.21279 * 120.00162 * 359.97438 * 20 19 2 22 22 C 1.50696 * 120.00141 * 179.97438 * 20 19 2 23 23 C 1.53002 * 109.47300 * 179.97438 * 22 20 19 24 24 C 1.50706 * 109.46925 * 180.02562 * 23 22 20 25 25 C 1.39869 * 126.03838 * 269.68782 * 24 23 22 26 26 N 1.30839 * 108.19682 * 179.81855 * 25 24 23 27 27 N 1.40076 * 108.21104 * 0.44367 * 26 25 24 28 28 H 0.96996 * 126.04594 * 179.69396 * 27 26 25 29 29 C 1.34954 * 107.92560 * 359.71809 * 27 26 25 30 30 H 1.09002 * 109.47140 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46454 * 299.99644 * 1 2 3 32 32 H 1.09002 * 109.47312 * 59.99604 * 1 2 3 33 33 H 1.08999 * 109.47357 * 304.99904 * 4 2 1 34 34 H 1.09004 * 109.47401 * 65.00137 * 4 2 1 35 35 H 1.09008 * 109.46772 * 59.99649 * 6 5 4 36 36 H 1.08998 * 109.47319 * 179.97438 * 6 5 4 37 37 H 1.08995 * 109.47165 * 300.00612 * 6 5 4 38 38 H 1.08998 * 109.47458 * 309.99817 * 7 5 4 39 39 H 1.08998 * 109.47481 * 70.00227 * 7 5 4 40 40 H 0.97002 * 119.99656 * 0.02562 * 10 8 7 41 41 H 0.96997 * 119.99892 * 180.02562 * 14 13 11 42 42 H 0.96999 * 120.00082 * 94.99853 * 19 2 1 43 43 H 1.09004 * 109.47043 * 59.99777 * 22 20 19 44 44 H 1.09004 * 109.47476 * 299.99851 * 22 20 19 45 45 H 1.09000 * 109.46497 * 60.00269 * 23 22 20 46 46 H 1.09000 * 109.47312 * 300.00049 * 23 22 20 47 47 H 1.07997 * 125.90256 * 0.02562 * 25 24 23 48 48 H 1.07994 * 126.13138 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5040 -0.8266 -1.1906 6 6 4.1310 0.4993 -1.2721 7 6 4.0106 -1.7143 -2.2457 8 6 5.4723 -1.9936 -2.0081 9 8 6.0364 -1.5020 -1.0535 10 7 6.1526 -2.7906 -2.8558 11 6 7.4823 -3.0452 -2.6395 12 1 7.9845 -2.6074 -1.7895 13 6 8.1836 -3.8663 -3.5138 14 7 7.5724 -4.3994 -4.5478 15 14 9.9951 -4.2138 -3.2185 16 1 10.1350 -5.4212 -2.3654 17 1 10.6731 -4.4454 -4.5193 18 1 10.6173 -3.0508 -2.5363 19 7 2.0184 -0.6907 1.1961 20 6 2.1471 -0.0184 2.3571 21 8 1.8591 1.1585 2.4115 22 6 2.6490 -0.7289 3.5876 23 6 2.7012 0.2543 4.7587 24 6 3.2037 -0.4562 5.9891 25 6 2.4153 -1.1117 6.9405 26 7 3.2076 -1.6074 7.8561 27 7 4.5262 -1.2738 7.5213 28 1 5.3202 -1.5086 8.0266 29 6 4.4969 -0.5675 6.3717 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.6053 -1.7197 -1.2953 34 1 1.7516 -0.1582 -2.1371 35 1 3.7910 1.1139 -0.4385 36 1 5.2147 0.3923 -1.2260 37 1 3.8523 0.9759 -2.2120 38 1 3.4544 -2.6515 -2.2301 39 1 3.8856 -1.2337 -3.2160 40 1 5.7014 -3.1840 -3.6191 41 1 8.0619 -4.9729 -5.1579 42 1 2.2491 -1.6318 1.1524 43 1 3.6482 -1.1214 3.3984 44 1 1.9762 -1.5508 3.8325 45 1 1.7022 0.6471 4.9480 46 1 3.3743 1.0759 4.5136 47 1 1.3389 -1.1970 6.9207 48 1 5.3522 -0.1640 5.8503 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669893903.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:52 Heat of formation + Delta-G solvation = -0.952807 kcal Electronic energy + Delta-G solvation = -28713.414047 eV Core-core repulsion = 24611.900269 eV Total energy + Delta-G solvation = -4101.513778 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.37643 -39.80517 -38.60981 -37.01237 -34.73235 -34.00853 -33.77621 -31.56949 -31.28270 -31.11904 -29.03265 -28.00743 -26.90117 -24.92771 -24.50040 -22.61453 -22.17972 -20.79583 -20.22190 -20.00133 -19.16543 -17.99938 -17.86222 -16.95495 -16.27364 -16.00759 -15.54427 -15.14400 -14.89306 -14.72357 -14.65948 -14.62947 -14.03380 -13.95168 -13.67550 -13.54194 -13.38059 -13.02895 -12.82534 -12.71904 -12.26016 -12.13752 -12.09187 -11.99519 -11.77648 -11.52276 -11.36484 -11.25456 -11.21428 -10.93980 -10.72526 -10.68473 -10.41948 -10.24330 -9.87640 -9.72595 -9.49875 -8.91868 -8.67737 -8.47137 -8.00372 -7.88450 -6.44209 -3.84989 1.68551 2.54084 2.69671 2.80963 3.15387 3.24277 3.29640 3.34716 3.88107 3.94942 4.22154 4.56198 4.71578 4.75710 4.85395 5.03420 5.07301 5.13608 5.16798 5.21101 5.26984 5.34474 5.43595 5.46683 5.52555 5.60587 5.64582 5.68313 5.71110 5.73173 5.94639 5.97898 5.98101 6.08527 6.10574 6.14987 6.25913 6.43450 6.56511 6.63715 7.03364 7.23455 7.34716 7.42403 7.52706 7.69053 8.04018 8.39632 8.59502 9.15894 9.52277 10.04121 10.73563 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008963 B = 0.002544 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3123.340710 B =11004.949735 C =13600.630464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.147 3.853 3 H 0.086 0.914 4 C 0.042 3.958 5 N -0.514 5.514 6 C 0.022 3.978 7 C 0.045 3.955 8 C 0.444 3.556 9 O -0.577 6.577 10 N -0.565 5.565 11 C -0.298 4.298 12 H 0.103 0.897 13 C 0.022 3.978 14 N -0.902 5.902 15 Si 0.929 3.071 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.270 1.270 19 N -0.707 5.707 20 C 0.516 3.484 21 O -0.554 6.554 22 C -0.136 4.136 23 C -0.023 4.023 24 C -0.236 4.236 25 C 0.055 3.945 26 N -0.300 5.300 27 N -0.479 5.479 28 H 0.439 0.561 29 C 0.063 3.937 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.045 0.955 35 H 0.061 0.939 36 H 0.095 0.905 37 H 0.013 0.987 38 H 0.087 0.913 39 H 0.047 0.953 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.405 0.595 43 H 0.095 0.905 44 H 0.090 0.910 45 H 0.076 0.924 46 H 0.075 0.925 47 H 0.182 0.818 48 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.075 5.767 13.269 19.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.104 0.896 4 C -0.087 4.087 5 N -0.238 5.238 6 C -0.126 4.126 7 C -0.087 4.087 8 C 0.230 3.770 9 O -0.461 6.461 10 N -0.202 5.202 11 C -0.428 4.428 12 H 0.120 0.880 13 C -0.180 4.180 14 N -0.544 5.544 15 Si 0.756 3.244 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.194 1.194 19 N -0.357 5.357 20 C 0.303 3.697 21 O -0.432 6.432 22 C -0.176 4.176 23 C -0.062 4.062 24 C -0.247 4.247 25 C -0.132 4.132 26 N -0.123 5.123 27 N -0.187 5.187 28 H 0.282 0.718 29 C -0.084 4.084 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.113 0.887 37 H 0.032 0.968 38 H 0.105 0.895 39 H 0.065 0.935 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.239 0.761 43 H 0.113 0.887 44 H 0.108 0.892 45 H 0.094 0.906 46 H 0.094 0.906 47 H 0.199 0.801 48 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -12.627 5.942 15.312 20.718 hybrid contribution 0.947 -0.384 -1.925 2.179 sum -11.680 5.558 13.388 18.616 Atomic orbital electron populations 1.22147 0.95269 1.02103 1.02470 1.20904 0.93151 0.97649 0.84154 0.89558 1.22507 0.89204 1.00834 0.96144 1.61569 1.03146 1.12217 1.46840 1.22556 1.02977 0.88514 0.98580 1.21880 0.96351 0.97548 0.92888 1.19730 0.87680 0.84133 0.85492 1.90487 1.69996 1.54279 1.31330 1.41877 1.10404 1.42835 1.25057 1.19680 0.84963 1.27141 1.10976 0.87957 1.25254 1.00469 0.96745 0.95488 1.69609 1.37441 1.32888 1.14416 0.85870 0.82004 0.78930 0.77561 1.20412 1.20949 1.19441 1.45840 1.66582 1.14392 1.08928 1.20673 0.77029 0.87243 0.84765 1.90667 1.50962 1.16164 1.85446 1.21683 1.03506 0.99673 0.92719 1.19569 1.02169 0.95884 0.88561 1.20181 0.92212 1.10593 1.01718 1.23848 1.00174 0.96809 0.92348 1.77309 0.87356 1.23625 1.23979 1.46308 1.07927 1.44021 1.20460 0.71763 1.22517 0.99509 0.97071 0.89349 0.92410 0.91907 0.91828 0.90337 0.93674 0.92071 0.88656 0.96803 0.89471 0.93513 0.77530 0.91882 0.76056 0.88674 0.89182 0.90574 0.90637 0.80094 0.80516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.48 37.16 0.35 -1.15 16 2 C 0.15 1.65 2.35 -67.93 -0.16 1.49 16 3 H 0.09 1.15 6.23 -51.93 -0.32 0.83 16 4 C 0.04 0.48 4.52 -3.82 -0.02 0.46 16 5 N -0.51 -7.84 4.22 -244.37 -1.03 -8.88 16 6 C 0.02 0.35 8.96 60.06 0.54 0.89 16 7 C 0.04 0.75 5.45 -4.98 -0.03 0.72 16 8 C 0.44 10.03 7.47 -10.98 -0.08 9.95 16 9 O -0.58 -14.88 13.91 5.54 0.08 -14.80 16 10 N -0.56 -13.89 5.29 -10.96 -0.06 -13.94 16 11 C -0.30 -8.11 9.68 -14.93 -0.14 -8.26 16 12 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16 13 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 14 N -0.90 -24.15 13.05 55.50 0.72 -23.43 16 15 Si 0.93 20.71 29.55 -169.99 -5.02 15.69 16 16 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 17 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 19 N -0.71 -8.03 4.80 -53.81 -0.26 -8.29 16 20 C 0.52 6.35 7.79 -10.99 -0.09 6.27 16 21 O -0.55 -8.57 15.64 5.56 0.09 -8.48 16 22 C -0.14 -1.31 5.68 -27.88 -0.16 -1.46 16 23 C -0.02 -0.22 4.99 -27.88 -0.14 -0.36 16 24 C -0.24 -2.20 5.35 -105.05 -0.56 -2.76 16 25 C 0.05 0.53 11.96 -17.36 -0.21 0.32 16 26 N -0.30 -3.25 12.70 30.62 0.39 -2.86 16 27 N -0.48 -4.07 7.36 30.45 0.22 -3.85 16 28 H 0.44 2.41 8.96 -182.62 -1.64 0.77 16 29 C 0.06 0.53 11.90 -17.22 -0.20 0.32 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.79 7.93 -51.93 -0.41 0.38 16 34 H 0.05 0.48 8.12 -51.93 -0.42 0.06 16 35 H 0.06 0.95 6.58 -51.92 -0.34 0.60 16 36 H 0.09 1.88 5.83 -51.93 -0.30 1.58 16 37 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 38 H 0.09 1.29 7.93 -51.93 -0.41 0.88 16 39 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 40 H 0.39 9.23 7.90 -40.82 -0.32 8.91 16 41 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 42 H 0.40 4.25 8.60 -40.82 -0.35 3.89 16 43 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 46 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 47 H 0.18 1.27 8.06 -52.49 -0.42 0.84 16 48 H 0.18 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 401.78 15.07 6.05 6.05 Total: -1.00 -34.09 401.78 -8.49 -42.58 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: -8.68 Total: 13.31 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: -0.99 Total: 6.91 kcal Atomic # 7 Polarization: -61.24 SS G_CDS: -0.01 Total: -61.25 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: 0.16 Total: -23.28 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.09 -8.49 -42.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669893903.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.622 kcal (2) G-P(sol) polarization free energy of solvation -34.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds