Wall clock time and date at job start Tue Mar 31 2020 19:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47140 * 2 1 4 4 C 1.53003 * 109.46786 * 240.00316 * 2 1 3 5 5 N 1.46905 * 109.47071 * 184.99740 * 4 2 1 6 6 C 1.46899 * 111.00223 * 293.95368 * 5 4 2 7 7 C 1.46895 * 110.99817 * 169.99925 * 5 4 2 8 8 C 1.50704 * 109.46841 * 190.00065 * 7 5 4 9 9 O 1.21295 * 120.00179 * 0.02562 * 8 7 5 10 10 N 1.34776 * 120.00102 * 179.97438 * 8 7 5 11 11 C 1.37101 * 120.00386 * 180.02562 * 10 8 7 12 12 H 1.07998 * 119.99369 * 0.02562 * 11 10 8 13 13 C 1.38946 * 120.00070 * 180.02562 * 11 10 8 14 14 N 1.31413 * 120.00138 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99921 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47347 * 89.99550 * 15 13 11 17 17 H 1.48500 * 109.47012 * 209.99657 * 15 13 11 18 18 H 1.48496 * 109.46790 * 329.99398 * 15 13 11 19 19 N 1.46496 * 109.47564 * 120.00408 * 2 1 3 20 20 C 1.34777 * 119.99875 * 275.00190 * 19 2 1 21 21 O 1.21279 * 120.00162 * 359.97438 * 20 19 2 22 22 C 1.50696 * 120.00141 * 179.97438 * 20 19 2 23 23 C 1.53002 * 109.47300 * 179.97438 * 22 20 19 24 24 C 1.50706 * 109.46925 * 180.02562 * 23 22 20 25 25 C 1.39869 * 126.03838 * 269.68782 * 24 23 22 26 26 N 1.30839 * 108.19682 * 179.81855 * 25 24 23 27 27 N 1.40076 * 108.21104 * 0.44367 * 26 25 24 28 28 H 0.96996 * 126.04594 * 179.69396 * 27 26 25 29 29 C 1.34954 * 107.92560 * 359.71809 * 27 26 25 30 30 H 1.09002 * 109.47140 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46454 * 299.99644 * 1 2 3 32 32 H 1.09002 * 109.47312 * 59.99604 * 1 2 3 33 33 H 1.08999 * 109.47357 * 304.99904 * 4 2 1 34 34 H 1.09004 * 109.47401 * 65.00137 * 4 2 1 35 35 H 1.09008 * 109.46772 * 59.99649 * 6 5 4 36 36 H 1.08998 * 109.47319 * 179.97438 * 6 5 4 37 37 H 1.08995 * 109.47165 * 300.00612 * 6 5 4 38 38 H 1.08998 * 109.47458 * 309.99817 * 7 5 4 39 39 H 1.08998 * 109.47481 * 70.00227 * 7 5 4 40 40 H 0.97002 * 119.99656 * 0.02562 * 10 8 7 41 41 H 0.96997 * 119.99892 * 180.02562 * 14 13 11 42 42 H 0.96999 * 120.00082 * 94.99853 * 19 2 1 43 43 H 1.09004 * 109.47043 * 59.99777 * 22 20 19 44 44 H 1.09004 * 109.47476 * 299.99851 * 22 20 19 45 45 H 1.09000 * 109.46497 * 60.00269 * 23 22 20 46 46 H 1.09000 * 109.47312 * 300.00049 * 23 22 20 47 47 H 1.07997 * 125.90256 * 0.02562 * 25 24 23 48 48 H 1.07994 * 126.13138 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5040 -0.8266 -1.1906 6 6 4.1310 0.4993 -1.2721 7 6 4.0106 -1.7143 -2.2457 8 6 5.4723 -1.9936 -2.0081 9 8 6.0364 -1.5020 -1.0535 10 7 6.1526 -2.7906 -2.8558 11 6 7.4823 -3.0452 -2.6395 12 1 7.9845 -2.6074 -1.7895 13 6 8.1836 -3.8663 -3.5138 14 7 7.5724 -4.3994 -4.5478 15 14 9.9951 -4.2138 -3.2185 16 1 10.1350 -5.4212 -2.3654 17 1 10.6731 -4.4454 -4.5193 18 1 10.6173 -3.0508 -2.5363 19 7 2.0184 -0.6907 1.1961 20 6 2.1471 -0.0184 2.3571 21 8 1.8591 1.1585 2.4115 22 6 2.6490 -0.7289 3.5876 23 6 2.7012 0.2543 4.7587 24 6 3.2037 -0.4562 5.9891 25 6 2.4153 -1.1117 6.9405 26 7 3.2076 -1.6074 7.8561 27 7 4.5262 -1.2738 7.5213 28 1 5.3202 -1.5086 8.0266 29 6 4.4969 -0.5675 6.3717 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.6053 -1.7197 -1.2953 34 1 1.7516 -0.1582 -2.1371 35 1 3.7910 1.1139 -0.4385 36 1 5.2147 0.3923 -1.2260 37 1 3.8523 0.9759 -2.2120 38 1 3.4544 -2.6515 -2.2301 39 1 3.8856 -1.2337 -3.2160 40 1 5.7014 -3.1840 -3.6191 41 1 8.0619 -4.9729 -5.1579 42 1 2.2491 -1.6318 1.1524 43 1 3.6482 -1.1214 3.3984 44 1 1.9762 -1.5508 3.8325 45 1 1.7022 0.6471 4.9480 46 1 3.3743 1.0759 4.5136 47 1 1.3389 -1.1970 6.9207 48 1 5.3522 -0.1640 5.8503 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001669893903.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:51 Heat of formation + Delta-G solvation = -27.199975 kcal Electronic energy + Delta-G solvation = -28714.552210 eV Core-core repulsion = 24611.900269 eV Total energy + Delta-G solvation = -4102.651941 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.07154 -40.82660 -40.20909 -38.29603 -36.08970 -35.46777 -34.82977 -33.23717 -32.32351 -31.99675 -29.79998 -29.44941 -27.96713 -26.63901 -25.41241 -23.82864 -22.89365 -21.72707 -21.14934 -20.92099 -20.75160 -19.81511 -18.71600 -18.01634 -17.58964 -17.11214 -16.66574 -16.52169 -16.25702 -16.13771 -15.59234 -15.52119 -15.34295 -15.12411 -15.04084 -14.73368 -14.35291 -14.17826 -13.69876 -13.58823 -13.52190 -13.42493 -13.12396 -13.01774 -12.93592 -12.84630 -12.68854 -12.62435 -12.40703 -12.36349 -12.11947 -11.98940 -11.66857 -11.46022 -11.42483 -10.73092 -10.57870 -10.23294 -9.96074 -9.85786 -9.39294 -9.17991 -8.43923 -5.91706 1.00132 1.38916 1.42720 1.54728 1.81610 1.85755 2.09859 2.10907 2.29629 2.46857 2.80227 3.23703 3.46885 3.81851 3.86686 4.04286 4.10871 4.19932 4.26578 4.34155 4.37886 4.40791 4.47163 4.56499 4.58836 4.61432 4.66569 4.74189 4.75065 4.82944 4.85395 4.89780 4.95532 5.11642 5.20917 5.31747 5.34439 5.40076 5.43930 5.70395 5.75389 5.90809 6.08971 6.22270 6.45793 6.64862 6.74425 6.77331 7.17137 7.46433 7.61785 8.17957 8.73505 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008963 B = 0.002544 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3123.340710 B =11004.949735 C =13600.630464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.147 3.853 3 H 0.062 0.938 4 C 0.047 3.953 5 N -0.526 5.526 6 C 0.032 3.968 7 C 0.057 3.943 8 C 0.443 3.557 9 O -0.613 6.613 10 N -0.577 5.577 11 C -0.328 4.328 12 H 0.078 0.922 13 C -0.014 4.014 14 N -0.922 5.922 15 Si 0.989 3.011 16 H -0.271 1.271 17 H -0.273 1.273 18 H -0.274 1.274 19 N -0.703 5.703 20 C 0.511 3.489 21 O -0.590 6.590 22 C -0.127 4.127 23 C -0.013 4.013 24 C -0.250 4.250 25 C 0.051 3.949 26 N -0.333 5.333 27 N -0.475 5.475 28 H 0.450 0.550 29 C 0.066 3.934 30 H 0.073 0.927 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.102 0.898 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.054 0.946 37 H 0.029 0.971 38 H 0.116 0.884 39 H 0.065 0.935 40 H 0.396 0.604 41 H 0.276 0.724 42 H 0.411 0.589 43 H 0.094 0.906 44 H 0.110 0.890 45 H 0.072 0.928 46 H 0.062 0.938 47 H 0.201 0.799 48 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.058 4.907 12.774 19.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.042 3.958 3 H 0.080 0.920 4 C -0.081 4.081 5 N -0.250 5.250 6 C -0.117 4.117 7 C -0.074 4.074 8 C 0.230 3.770 9 O -0.498 6.498 10 N -0.215 5.215 11 C -0.458 4.458 12 H 0.096 0.904 13 C -0.213 4.213 14 N -0.563 5.563 15 Si 0.813 3.187 16 H -0.197 1.197 17 H -0.198 1.198 18 H -0.199 1.199 19 N -0.354 5.354 20 C 0.300 3.700 21 O -0.471 6.471 22 C -0.167 4.167 23 C -0.052 4.052 24 C -0.261 4.261 25 C -0.135 4.135 26 N -0.156 5.156 27 N -0.184 5.184 28 H 0.296 0.704 29 C -0.082 4.082 30 H 0.092 0.908 31 H 0.066 0.934 32 H 0.096 0.904 33 H 0.120 0.880 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.047 0.953 38 H 0.134 0.866 39 H 0.083 0.917 40 H 0.229 0.771 41 H 0.086 0.914 42 H 0.246 0.754 43 H 0.112 0.888 44 H 0.128 0.872 45 H 0.091 0.909 46 H 0.081 0.919 47 H 0.217 0.783 48 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -13.630 5.056 14.811 20.753 hybrid contribution 1.224 -0.057 -1.749 2.135 sum -12.406 4.999 13.062 18.695 Atomic orbital electron populations 1.22055 0.93384 1.03133 1.02458 1.20914 0.94504 0.96329 0.84096 0.91976 1.22583 0.86321 1.02508 0.96671 1.61495 1.05527 1.11414 1.46608 1.22335 1.00452 0.89403 0.99462 1.21762 0.92118 0.99425 0.94066 1.20814 0.89957 0.82152 0.84048 1.90473 1.71588 1.55083 1.32705 1.41947 1.09871 1.43827 1.25816 1.19615 0.86599 1.28458 1.11090 0.90398 1.25978 1.04190 0.96108 0.95040 1.69667 1.38808 1.33050 1.14766 0.84980 0.77286 0.78587 0.77823 1.19677 1.19777 1.19858 1.45882 1.66034 1.14618 1.08824 1.21117 0.76436 0.86879 0.85613 1.90649 1.52680 1.17755 1.86044 1.21659 1.03676 0.99885 0.91494 1.19421 1.01624 0.95466 0.88723 1.20215 0.92725 1.11346 1.01835 1.24214 1.01164 0.96227 0.91912 1.77260 0.88381 1.24941 1.25041 1.46358 1.07862 1.43663 1.20553 0.70429 1.22918 1.00045 0.96182 0.89079 0.90790 0.93424 0.90367 0.87998 0.92024 0.91931 0.92714 0.95301 0.86591 0.91670 0.77076 0.91433 0.75370 0.88775 0.87175 0.90949 0.91935 0.78264 0.78346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 9.48 71.98 0.68 -1.77 16 2 C 0.15 3.04 2.35 44.99 0.11 3.15 16 3 H 0.06 1.62 6.23 -2.39 -0.01 1.60 16 4 C 0.05 0.92 4.52 86.30 0.39 1.31 16 5 N -0.53 -15.08 4.22 -927.04 -3.92 -19.00 16 6 C 0.03 1.01 8.96 127.69 1.14 2.15 16 7 C 0.06 1.79 5.45 85.56 0.47 2.26 16 8 C 0.44 19.93 7.47 87.66 0.66 20.59 16 9 O -0.61 -32.24 13.91 -3.08 -0.04 -32.28 16 10 N -0.58 -28.50 5.29 -306.98 -1.62 -30.12 16 11 C -0.33 -18.15 9.68 84.04 0.81 -17.34 16 12 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 13 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 14 N -0.92 -48.87 13.05 21.66 0.28 -48.59 16 15 Si 0.99 42.26 29.55 68.60 2.03 44.29 16 16 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 17 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 18 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 19 N -0.70 -15.05 4.80 -442.54 -2.12 -17.17 16 20 C 0.51 12.36 7.79 87.66 0.68 13.04 16 21 O -0.59 -18.43 15.64 -3.03 -0.05 -18.47 16 22 C -0.13 -2.35 5.68 29.85 0.17 -2.18 16 23 C -0.01 -0.25 4.99 29.85 0.15 -0.10 16 24 C -0.25 -4.48 5.35 -20.14 -0.11 -4.59 16 25 C 0.05 0.93 11.96 85.24 1.02 1.95 16 26 N -0.33 -7.01 12.70 -57.02 -0.72 -7.74 16 27 N -0.48 -7.68 7.36 -57.59 -0.42 -8.11 16 28 H 0.45 4.57 8.96 -213.34 -1.91 2.66 16 29 C 0.07 1.04 11.90 83.54 0.99 2.04 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.08 1.04 8.14 -2.39 -0.02 1.03 16 33 H 0.10 1.59 7.93 -2.39 -0.02 1.58 16 34 H 0.06 1.07 8.12 -2.38 -0.02 1.05 16 35 H 0.06 1.94 6.58 -2.38 -0.02 1.92 16 36 H 0.05 2.20 5.83 -2.39 -0.01 2.19 16 37 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.12 3.01 7.93 -2.39 -0.02 2.99 16 39 H 0.07 1.84 8.12 -2.39 -0.02 1.82 16 40 H 0.40 18.55 7.90 -92.71 -0.73 17.82 16 41 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 42 H 0.41 7.83 8.60 -92.71 -0.80 7.03 16 43 H 0.09 1.78 8.14 -2.38 -0.02 1.77 16 44 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.07 1.40 8.10 -2.39 -0.02 1.39 16 46 H 0.06 1.33 8.10 -2.39 -0.02 1.31 16 47 H 0.20 2.59 8.06 -2.91 -0.02 2.56 16 48 H 0.20 2.10 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -74.92 401.78 -1.39 -76.31 By element: Atomic # 1 Polarization: 43.05 SS G_CDS: -2.44 Total: 40.62 kcal Atomic # 6 Polarization: 12.63 SS G_CDS: 7.63 Total: 20.26 kcal Atomic # 7 Polarization: -122.20 SS G_CDS: -8.53 Total: -130.72 kcal Atomic # 8 Polarization: -50.66 SS G_CDS: -0.09 Total: -50.75 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -74.92 -1.39 -76.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669893903.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.110 kcal (2) G-P(sol) polarization free energy of solvation -74.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds