Wall clock time and date at job start Tue Mar 31 2020 19:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47322 * 2 1 4 4 C 1.53001 * 109.47023 * 239.99506 * 2 1 3 5 5 N 1.46906 * 109.46881 * 185.00005 * 4 2 1 6 6 C 1.46900 * 110.99796 * 293.95627 * 5 4 2 7 7 C 1.46899 * 110.99672 * 170.00462 * 5 4 2 8 8 C 1.50708 * 109.46774 * 190.00130 * 7 5 4 9 9 O 1.21295 * 119.99838 * 0.02562 * 8 7 5 10 10 N 1.34773 * 119.99712 * 179.97438 * 8 7 5 11 11 C 1.37100 * 119.99643 * 180.02562 * 10 8 7 12 12 H 1.07995 * 120.00219 * 359.97438 * 11 10 8 13 13 C 1.38952 * 119.99803 * 180.02562 * 11 10 8 14 14 N 1.31410 * 120.00083 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 120.00027 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.47126 * 90.00155 * 15 13 11 17 17 H 1.48497 * 109.47230 * 209.99993 * 15 13 11 18 18 H 1.48504 * 109.47234 * 330.00254 * 15 13 11 19 19 N 1.46503 * 109.46836 * 119.99683 * 2 1 3 20 20 C 1.34769 * 120.00207 * 275.00165 * 19 2 1 21 21 O 1.21280 * 120.00091 * 359.97438 * 20 19 2 22 22 C 1.50698 * 120.00252 * 180.02562 * 20 19 2 23 23 C 1.50697 * 109.47436 * 180.02562 * 22 20 19 24 24 C 1.34669 * 126.59585 * 85.16051 * 23 22 20 25 25 N 1.34133 * 108.02235 * 180.28483 * 24 23 22 26 26 C 1.30502 * 109.25197 * 359.73051 * 25 24 23 27 27 N 1.35041 * 108.70384 * 0.02562 * 26 25 24 28 28 C 1.46499 * 126.39764 * 180.02562 * 27 26 25 29 29 H 1.08998 * 109.46874 * 300.00158 * 1 2 3 30 30 H 1.09001 * 109.46971 * 60.00419 * 1 2 3 31 31 H 1.09002 * 109.46931 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47241 * 304.99990 * 4 2 1 33 33 H 1.09000 * 109.46637 * 65.00180 * 4 2 1 34 34 H 1.09003 * 109.47207 * 60.00537 * 6 5 4 35 35 H 1.09001 * 109.46860 * 179.97438 * 6 5 4 36 36 H 1.08997 * 109.47533 * 300.00177 * 6 5 4 37 37 H 1.08998 * 109.46850 * 309.99788 * 7 5 4 38 38 H 1.08991 * 109.47441 * 70.00179 * 7 5 4 39 39 H 0.97000 * 119.99897 * 0.02562 * 10 8 7 40 40 H 0.96999 * 120.00500 * 179.97438 * 14 13 11 41 41 H 0.97003 * 119.99968 * 95.00155 * 19 2 1 42 42 H 1.08994 * 109.47477 * 59.99406 * 22 20 19 43 43 H 1.09007 * 109.47124 * 299.99518 * 22 20 19 44 44 H 1.07993 * 125.98713 * 0.05405 * 24 23 22 45 45 H 1.07998 * 125.64430 * 179.97438 * 26 25 24 46 46 H 1.09002 * 109.47391 * 90.01916 * 28 27 26 47 47 H 1.09001 * 109.46813 * 330.01972 * 28 27 26 48 48 H 1.09004 * 109.47041 * 210.02099 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 3.5041 -0.8268 -1.1903 6 6 4.1310 0.4992 -1.2719 7 6 4.0108 -1.7145 -2.2454 8 6 5.4725 -1.9939 -2.0077 9 8 6.0365 -1.5022 -1.0530 10 7 6.1528 -2.7908 -2.8553 11 6 7.4824 -3.0454 -2.6388 12 1 7.9848 -2.6070 -1.7892 13 6 8.1839 -3.8666 -3.5130 14 7 9.4582 -4.1111 -3.3052 15 14 7.3151 -4.6244 -4.9828 16 1 7.4242 -3.7099 -6.1478 17 1 7.9476 -5.9263 -5.3146 18 1 5.8828 -4.8393 -4.6546 19 7 2.0183 -0.6906 1.1963 20 6 2.1470 -0.0182 2.3572 21 8 1.8590 1.1586 2.4115 22 6 2.6498 -0.7284 3.5875 23 6 2.6997 0.2397 4.7413 24 6 1.6834 0.5608 5.5645 25 7 2.1360 1.4593 6.4516 26 6 3.3957 1.7028 6.2130 27 7 3.7876 0.9598 5.1556 28 6 5.1259 0.9331 4.5602 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6054 -1.7199 -1.2950 33 1 1.7516 -0.1584 -2.1369 34 1 3.7911 1.1138 -0.4383 35 1 5.2148 0.3922 -1.2256 36 1 3.8525 0.9757 -2.2118 37 1 3.4545 -2.6517 -2.2297 38 1 3.8858 -1.2340 -3.2156 39 1 5.7016 -3.1843 -3.6186 40 1 9.9479 -4.6847 -3.9152 41 1 2.2490 -1.6318 1.1527 42 1 3.6490 -1.1203 3.3980 43 1 1.9775 -1.5507 3.8327 44 1 0.6790 0.1670 5.5162 45 1 4.0209 2.3860 6.7686 46 1 5.7250 0.1637 5.0472 47 1 5.6027 1.9041 4.6945 48 1 5.0457 0.7118 3.4959 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001669910215.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:36 Heat of formation + Delta-G solvation = -22.719194 kcal Electronic energy + Delta-G solvation = -29425.661375 eV Core-core repulsion = 25323.203735 eV Total energy + Delta-G solvation = -4102.457640 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.03680 -40.85071 -40.30924 -38.32584 -36.11672 -35.50202 -34.96133 -33.71720 -33.42424 -31.71793 -29.61266 -28.02577 -27.99658 -27.77239 -26.52795 -23.99049 -22.50652 -22.32590 -21.30146 -21.19958 -20.68925 -20.12886 -18.29869 -17.98741 -17.71417 -17.11651 -16.77370 -16.67228 -16.38257 -16.20238 -16.05496 -15.53857 -15.23196 -15.18291 -14.87187 -14.69259 -14.53714 -14.31987 -14.11576 -13.92962 -13.72263 -13.63947 -13.46926 -13.40054 -13.15184 -12.93571 -12.87870 -12.73509 -12.64937 -12.44551 -12.35265 -11.96694 -11.70213 -11.43435 -10.99044 -10.91111 -10.47716 -10.32817 -10.19652 -9.94531 -9.30753 -9.20903 -8.38649 -5.98777 1.03703 1.31672 1.37218 1.46047 1.72206 1.91598 2.01425 2.15764 2.25020 2.44299 2.64846 3.18368 3.27901 3.59471 3.80345 3.87913 3.92247 4.02588 4.11291 4.17843 4.21916 4.34795 4.36636 4.41595 4.43046 4.47555 4.55576 4.57393 4.60083 4.67264 4.71893 4.81534 4.83347 4.83780 5.07021 5.17508 5.31860 5.40475 5.55909 5.63038 5.78581 5.91374 6.01935 6.17068 6.29140 6.63338 6.68741 6.92793 7.11514 7.37367 7.44732 8.02503 8.78961 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014166 B = 0.002543 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.092004 B =11006.691237 C =12444.741799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.148 3.852 3 H 0.058 0.942 4 C 0.048 3.952 5 N -0.529 5.529 6 C 0.031 3.969 7 C 0.053 3.947 8 C 0.453 3.547 9 O -0.604 6.604 10 N -0.595 5.595 11 C -0.322 4.322 12 H 0.056 0.944 13 C -0.017 4.017 14 N -0.937 5.937 15 Si 0.963 3.037 16 H -0.261 1.261 17 H -0.278 1.278 18 H -0.227 1.227 19 N -0.698 5.698 20 C 0.515 3.485 21 O -0.583 6.583 22 C -0.062 4.062 23 C -0.011 4.011 24 C -0.038 4.038 25 N -0.534 5.534 26 C 0.176 3.824 27 N -0.457 5.457 28 C 0.067 3.933 29 H 0.042 0.958 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.109 0.891 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.032 0.968 37 H 0.128 0.872 38 H 0.076 0.924 39 H 0.389 0.611 40 H 0.278 0.722 41 H 0.414 0.586 42 H 0.112 0.888 43 H 0.145 0.855 44 H 0.173 0.827 45 H 0.235 0.765 46 H 0.097 0.903 47 H 0.107 0.893 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.915 3.750 5.979 20.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.043 3.957 3 H 0.076 0.924 4 C -0.079 4.079 5 N -0.253 5.253 6 C -0.117 4.117 7 C -0.077 4.077 8 C 0.241 3.759 9 O -0.487 6.487 10 N -0.237 5.237 11 C -0.452 4.452 12 H 0.074 0.926 13 C -0.215 4.215 14 N -0.578 5.578 15 Si 0.783 3.217 16 H -0.185 1.185 17 H -0.204 1.204 18 H -0.150 1.150 19 N -0.349 5.349 20 C 0.302 3.698 21 O -0.464 6.464 22 C -0.102 4.102 23 C -0.127 4.127 24 C -0.186 4.186 25 N -0.253 5.253 26 C -0.106 4.106 27 N -0.139 5.139 28 C -0.075 4.075 29 H 0.061 0.939 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.127 0.873 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.050 0.950 37 H 0.146 0.854 38 H 0.094 0.906 39 H 0.224 0.776 40 H 0.087 0.913 41 H 0.250 0.750 42 H 0.130 0.870 43 H 0.163 0.837 44 H 0.190 0.810 45 H 0.252 0.748 46 H 0.115 0.885 47 H 0.126 0.874 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -18.734 4.964 7.593 20.815 hybrid contribution 0.936 -0.629 -2.077 2.363 sum -17.798 4.336 5.516 19.131 Atomic orbital electron populations 1.22060 0.93405 1.03339 1.02302 1.20925 0.94480 0.96221 0.84091 0.92399 1.22585 0.86120 1.02830 0.96401 1.61481 1.05630 1.11341 1.46840 1.22328 1.00347 0.89528 0.99516 1.21868 0.91298 1.00049 0.94531 1.20919 0.90065 0.81363 0.83590 1.90519 1.71638 1.54148 1.32435 1.42058 1.09325 1.45746 1.26538 1.18967 0.85451 1.29018 1.11750 0.92630 1.26097 0.96205 0.97395 1.01848 1.69804 1.09936 1.38444 1.39638 0.85393 0.80178 0.78364 0.77762 1.18548 1.20377 1.15000 1.45766 1.65988 1.14692 1.08428 1.20746 0.76999 0.86842 0.85253 1.90701 1.52058 1.17869 1.85739 1.20100 1.05615 0.96674 0.87858 1.20752 0.88608 1.02290 1.01057 1.22209 0.99694 1.00742 0.95928 1.70206 1.10050 1.17495 1.27506 1.25519 0.93228 0.99995 0.91818 1.45461 1.10907 1.32388 1.25156 1.22250 0.79918 1.05965 0.99374 0.93930 0.90321 0.90345 0.87311 0.91718 0.92365 0.92846 0.94989 0.85437 0.90601 0.77589 0.91304 0.74952 0.87026 0.83740 0.81020 0.74843 0.88496 0.87405 0.90854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.48 71.98 0.68 -1.55 16 2 C 0.15 2.75 2.35 44.99 0.11 2.85 16 3 H 0.06 1.43 6.23 -2.39 -0.01 1.42 16 4 C 0.05 0.77 4.52 86.30 0.39 1.16 16 5 N -0.53 -13.13 4.22 -927.03 -3.92 -17.04 16 6 C 0.03 0.90 8.96 127.69 1.14 2.05 16 7 C 0.05 1.38 5.45 85.56 0.47 1.85 16 8 C 0.45 18.53 7.47 87.66 0.66 19.19 16 9 O -0.60 -30.65 13.91 -3.08 -0.04 -30.69 16 10 N -0.59 -26.07 5.09 -306.98 -1.56 -27.63 16 11 C -0.32 -18.04 10.16 84.04 0.85 -17.18 16 12 H 0.06 3.73 7.39 -2.91 -0.02 3.71 16 13 C -0.02 -0.92 5.50 84.93 0.47 -0.45 16 14 N -0.94 -55.17 13.96 21.66 0.30 -54.87 16 15 Si 0.96 37.07 27.74 68.60 1.90 38.97 16 16 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 17 H -0.28 -10.80 7.11 99.48 0.71 -10.09 16 18 H -0.23 -7.12 6.52 99.48 0.65 -6.47 16 19 N -0.70 -13.28 4.80 -442.53 -2.12 -15.41 16 20 C 0.51 12.13 7.79 87.66 0.68 12.82 16 21 O -0.58 -19.02 15.70 -3.03 -0.05 -19.07 16 22 C -0.06 -1.14 5.88 29.10 0.17 -0.97 16 23 C -0.01 -0.27 5.45 40.95 0.22 -0.04 16 24 C -0.04 -1.01 11.79 83.52 0.98 -0.02 16 25 N -0.53 -15.18 11.25 -200.31 -2.25 -17.43 16 26 C 0.18 3.97 12.56 180.26 2.26 6.24 16 27 N -0.46 -10.06 3.15 -537.88 -1.70 -11.76 16 28 C 0.07 1.08 10.83 127.77 1.38 2.46 16 29 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.08 0.85 8.14 -2.39 -0.02 0.84 16 32 H 0.11 1.20 7.93 -2.39 -0.02 1.18 16 33 H 0.06 0.88 8.12 -2.39 -0.02 0.86 16 34 H 0.06 1.70 6.58 -2.39 -0.02 1.68 16 35 H 0.05 2.02 5.83 -2.39 -0.01 2.01 16 36 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.13 2.43 7.93 -2.39 -0.02 2.41 16 38 H 0.08 1.64 8.12 -2.39 -0.02 1.62 16 39 H 0.39 13.94 5.76 -92.71 -0.53 13.41 16 40 H 0.28 14.98 8.31 -92.71 -0.77 14.21 16 41 H 0.41 6.42 8.60 -92.71 -0.80 5.62 16 42 H 0.11 1.87 7.63 -2.39 -0.02 1.85 16 43 H 0.14 1.73 8.14 -2.38 -0.02 1.71 16 44 H 0.17 3.93 8.06 -2.91 -0.02 3.90 16 45 H 0.24 3.23 8.06 -2.91 -0.02 3.21 16 46 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 47 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 48 H 0.07 1.42 7.67 -2.38 -0.02 1.40 16 Total: -1.00 -86.60 397.96 0.64 -85.96 By element: Atomic # 1 Polarization: 40.97 SS G_CDS: -0.40 Total: 40.57 kcal Atomic # 6 Polarization: 17.91 SS G_CDS: 10.47 Total: 28.39 kcal Atomic # 7 Polarization: -132.88 SS G_CDS: -11.25 Total: -144.13 kcal Atomic # 8 Polarization: -49.67 SS G_CDS: -0.09 Total: -49.76 kcal Atomic # 14 Polarization: 37.07 SS G_CDS: 1.90 Total: 38.97 kcal Total: -86.60 0.64 -85.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669910215.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.242 kcal (2) G-P(sol) polarization free energy of solvation -86.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds