Wall clock time and date at job start Tue Mar 31 2020 19:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47438 * 2 1 4 4 C 1.53003 * 109.47312 * 120.00042 * 2 1 3 5 5 N 1.46898 * 109.47261 * 175.00091 * 4 2 1 6 6 C 1.46901 * 111.00305 * 66.04536 * 5 4 2 7 7 C 1.46900 * 111.00143 * 190.00071 * 5 4 2 8 8 C 1.50701 * 109.47521 * 169.99887 * 7 5 4 9 9 O 1.21296 * 119.99678 * 0.02562 * 8 7 5 10 10 N 1.34771 * 120.00267 * 179.97438 * 8 7 5 11 11 C 1.37098 * 120.00205 * 180.02562 * 10 8 7 12 12 H 1.08007 * 119.99664 * 0.02562 * 11 10 8 13 13 C 1.38944 * 120.00300 * 180.02562 * 11 10 8 14 14 N 1.31419 * 119.99852 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00172 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47353 * 90.00029 * 15 13 11 17 17 H 1.48498 * 109.47106 * 209.99726 * 15 13 11 18 18 H 1.48501 * 109.47088 * 329.99653 * 15 13 11 19 19 N 1.46503 * 109.47299 * 240.00153 * 2 1 3 20 20 C 1.34769 * 120.00207 * 84.99975 * 19 2 1 21 21 O 1.21283 * 120.00415 * 359.97438 * 20 19 2 22 22 C 1.50698 * 120.00252 * 180.02562 * 20 19 2 23 23 C 1.50697 * 109.47436 * 180.02562 * 22 20 19 24 24 C 1.34669 * 126.59585 * 85.16051 * 23 22 20 25 25 N 1.34133 * 108.02235 * 180.28483 * 24 23 22 26 26 C 1.30502 * 109.25197 * 359.73051 * 25 24 23 27 27 N 1.35041 * 108.70384 * 0.02562 * 26 25 24 28 28 C 1.46499 * 126.39764 * 180.02562 * 27 26 25 29 29 H 1.09001 * 109.47149 * 299.99772 * 1 2 3 30 30 H 1.09002 * 109.47103 * 60.00208 * 1 2 3 31 31 H 1.09008 * 109.46839 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46835 * 295.00192 * 4 2 1 33 33 H 1.09002 * 109.47206 * 54.99937 * 4 2 1 34 34 H 1.09006 * 109.46937 * 59.99679 * 6 5 4 35 35 H 1.08995 * 109.47525 * 179.97438 * 6 5 4 36 36 H 1.09002 * 109.46854 * 300.00586 * 6 5 4 37 37 H 1.09000 * 109.46844 * 290.00121 * 7 5 4 38 38 H 1.08997 * 109.47011 * 49.99801 * 7 5 4 39 39 H 0.97002 * 119.99858 * 0.02562 * 10 8 7 40 40 H 0.96998 * 119.99863 * 179.97438 * 14 13 11 41 41 H 0.97003 * 119.99968 * 264.99964 * 19 2 1 42 42 H 1.08994 * 109.47477 * 59.99406 * 22 20 19 43 43 H 1.09007 * 109.47124 * 299.99518 * 22 20 19 44 44 H 1.07993 * 125.98713 * 0.05405 * 24 23 22 45 45 H 1.08005 * 125.64657 * 180.02562 * 26 25 24 46 46 H 1.09002 * 109.47391 * 90.01916 * 28 27 26 47 47 H 1.09001 * 109.46813 * 330.01972 * 28 27 26 48 48 H 1.09004 * 109.47041 * 210.02099 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5040 -0.8267 1.1904 6 6 4.1311 0.4993 1.2720 7 6 4.0108 -1.7144 2.2454 8 6 5.4725 -1.9938 2.0078 9 8 6.0367 -1.5013 1.0537 10 7 6.1530 -2.7899 2.8560 11 6 7.4829 -3.0436 2.6402 12 1 7.9853 -2.6051 1.7906 13 6 8.1844 -3.8648 3.5143 14 7 7.5731 -4.3979 4.5484 15 14 9.9966 -4.2099 3.2206 16 1 10.8150 -3.1863 3.9189 17 1 10.3354 -5.5570 3.7457 18 1 10.2800 -4.1608 1.7637 19 7 2.0184 -0.6906 -1.1962 20 6 2.1471 -0.0183 -2.3571 21 8 1.8582 1.1584 -2.4118 22 6 2.6489 -0.7288 -3.5877 23 6 2.7004 0.2397 -4.7411 24 6 3.7087 1.0814 -5.0383 25 7 3.3618 1.7743 -6.1332 26 6 2.1792 1.3898 -6.5291 27 7 1.7321 0.4311 -5.6896 28 6 0.4485 -0.2698 -5.7753 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 1.7517 -0.1584 2.1369 33 1 1.6054 -1.7198 1.2952 34 1 3.8524 0.9758 2.2119 35 1 5.2148 0.3922 1.2266 36 1 3.7911 1.1139 0.4384 37 1 3.8858 -1.2338 3.2157 38 1 3.4546 -2.6516 2.2299 39 1 5.7018 -3.1834 3.6193 40 1 8.0627 -4.9715 5.1584 41 1 2.2491 -1.6318 -1.1526 42 1 1.9761 -1.5506 -3.8326 43 1 3.6481 -1.1213 -3.3986 44 1 4.6329 1.1835 -4.4891 45 1 1.6464 1.7746 -7.3861 46 1 0.5629 -1.1639 -6.3882 47 1 -0.2948 0.3874 -6.2266 48 1 0.1224 -0.5543 -4.7749 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001669910222.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:38 Heat of formation + Delta-G solvation = -27.301712 kcal Electronic energy + Delta-G solvation = -29234.268879 eV Core-core repulsion = 25131.612526 eV Total energy + Delta-G solvation = -4102.656353 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.03015 -40.82621 -40.20156 -38.28512 -36.08728 -35.47266 -34.95166 -33.42392 -33.23030 -31.71034 -29.46849 -28.01398 -27.99236 -27.73367 -26.62504 -24.06904 -22.53114 -22.31492 -21.30195 -20.92274 -20.67877 -19.81587 -18.30572 -17.98405 -17.71599 -17.09060 -16.67976 -16.55939 -16.39236 -16.17233 -16.13257 -15.59659 -15.25500 -15.06605 -14.98795 -14.79003 -14.49146 -14.16618 -13.94450 -13.67962 -13.63618 -13.59220 -13.41671 -13.27307 -13.09434 -12.95028 -12.86920 -12.73631 -12.63355 -12.43356 -12.35975 -12.11309 -11.70324 -11.42863 -10.97076 -10.90879 -10.44383 -10.23960 -9.95948 -9.94356 -9.31810 -9.19692 -8.43953 -5.91542 1.03131 1.38811 1.42934 1.54901 1.71345 1.93978 2.11103 2.16039 2.29764 2.45506 2.78535 3.23636 3.46217 3.59936 3.80217 3.89581 3.95344 4.05244 4.12178 4.20860 4.24572 4.36801 4.42946 4.44308 4.45085 4.55948 4.56695 4.60067 4.61420 4.70947 4.72645 4.80673 4.83184 4.85955 5.06357 5.18822 5.29902 5.37469 5.44164 5.62581 5.76983 5.89708 6.07528 6.20677 6.34142 6.64982 6.68798 7.12942 7.17452 7.37142 7.61987 8.18418 8.73386 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013557 B = 0.002392 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.862243 B =11700.445915 C =13119.687681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.148 3.852 3 H 0.058 0.942 4 C 0.047 3.953 5 N -0.526 5.526 6 C 0.032 3.968 7 C 0.058 3.942 8 C 0.442 3.558 9 O -0.613 6.613 10 N -0.576 5.576 11 C -0.328 4.328 12 H 0.077 0.923 13 C -0.013 4.013 14 N -0.921 5.921 15 Si 0.988 3.012 16 H -0.274 1.274 17 H -0.271 1.271 18 H -0.273 1.273 19 N -0.697 5.697 20 C 0.515 3.485 21 O -0.583 6.583 22 C -0.060 4.060 23 C -0.004 4.004 24 C -0.049 4.049 25 N -0.539 5.539 26 C 0.180 3.820 27 N -0.455 5.455 28 C 0.065 3.935 29 H 0.077 0.923 30 H 0.044 0.956 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.106 0.894 34 H 0.028 0.972 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.119 0.881 39 H 0.396 0.604 40 H 0.276 0.724 41 H 0.414 0.586 42 H 0.133 0.867 43 H 0.124 0.876 44 H 0.155 0.845 45 H 0.241 0.759 46 H 0.100 0.900 47 H 0.109 0.891 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.576 2.117 -12.696 25.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.043 3.957 3 H 0.076 0.924 4 C -0.081 4.081 5 N -0.250 5.250 6 C -0.116 4.116 7 C -0.073 4.073 8 C 0.230 3.770 9 O -0.499 6.499 10 N -0.214 5.214 11 C -0.457 4.457 12 H 0.095 0.905 13 C -0.213 4.213 14 N -0.562 5.562 15 Si 0.812 3.188 16 H -0.200 1.200 17 H -0.196 1.196 18 H -0.198 1.198 19 N -0.348 5.348 20 C 0.302 3.698 21 O -0.463 6.463 22 C -0.101 4.101 23 C -0.120 4.120 24 C -0.197 4.197 25 N -0.258 5.258 26 C -0.102 4.102 27 N -0.137 5.137 28 C -0.076 4.076 29 H 0.095 0.905 30 H 0.063 0.937 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.125 0.875 34 H 0.047 0.953 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.137 0.863 39 H 0.230 0.770 40 H 0.086 0.914 41 H 0.250 0.750 42 H 0.151 0.849 43 H 0.142 0.858 44 H 0.172 0.828 45 H 0.257 0.743 46 H 0.118 0.882 47 H 0.127 0.873 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -20.891 3.449 -14.037 25.405 hybrid contribution 0.614 -0.698 1.657 1.900 sum -20.278 2.751 -12.380 23.917 Atomic orbital electron populations 1.22040 0.93150 1.03334 1.02334 1.20918 0.94611 0.96182 0.83992 0.92418 1.22588 0.86313 1.02675 0.96493 1.61497 1.05529 1.11269 1.46671 1.22324 1.00486 0.89501 0.99333 1.21765 0.92082 0.99465 0.94000 1.20835 0.90016 0.82148 0.84047 1.90485 1.71618 1.55009 1.32797 1.41937 1.09804 1.43888 1.25790 1.19604 0.86615 1.28398 1.11121 0.90496 1.25960 1.04112 0.96107 0.95080 1.69665 1.38712 1.33110 1.14724 0.84994 0.77472 0.77891 0.78409 1.19974 1.19583 1.19824 1.45765 1.65965 1.14674 1.08419 1.20748 0.76920 0.86837 0.85329 1.90702 1.52042 1.17745 1.85848 1.20074 1.06132 0.96399 0.87490 1.20617 0.91511 1.04336 0.95508 1.22108 1.01137 0.98604 0.97830 1.70178 1.14255 1.27334 1.14016 1.25584 0.93226 0.92183 0.99234 1.45444 1.16142 1.30720 1.21435 1.22359 0.81456 0.98843 1.04968 0.90450 0.93661 0.90311 0.92061 0.87542 0.95321 0.92755 0.92207 0.91699 0.86296 0.77041 0.91429 0.74983 0.84879 0.85771 0.82780 0.74318 0.88201 0.87269 0.89714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.48 71.98 0.68 -1.55 16 2 C 0.15 2.96 2.35 44.99 0.11 3.06 16 3 H 0.06 1.52 6.23 -2.39 -0.01 1.51 16 4 C 0.05 0.88 4.52 86.30 0.39 1.27 16 5 N -0.53 -14.86 4.22 -927.05 -3.92 -18.77 16 6 C 0.03 1.03 8.96 127.69 1.14 2.17 16 7 C 0.06 1.78 5.45 85.56 0.47 2.24 16 8 C 0.44 19.88 7.47 87.66 0.66 20.53 16 9 O -0.61 -32.48 13.91 -3.08 -0.04 -32.53 16 10 N -0.58 -28.45 5.29 -306.99 -1.62 -30.08 16 11 C -0.33 -18.21 9.68 84.04 0.81 -17.40 16 12 H 0.08 4.59 7.16 -2.91 -0.02 4.57 16 13 C -0.01 -0.69 5.50 84.92 0.47 -0.22 16 14 N -0.92 -48.82 13.05 21.66 0.28 -48.54 16 15 Si 0.99 42.62 29.55 68.60 2.03 44.65 16 16 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 17 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 18 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 19 N -0.70 -13.92 4.80 -442.54 -2.12 -16.05 16 20 C 0.52 12.36 7.79 87.66 0.68 13.04 16 21 O -0.58 -19.23 15.70 -3.04 -0.05 -19.27 16 22 C -0.06 -1.12 5.88 29.10 0.17 -0.94 16 23 C 0.00 -0.09 5.45 40.95 0.22 0.14 16 24 C -0.05 -1.48 11.79 83.52 0.98 -0.50 16 25 N -0.54 -16.14 11.25 -200.31 -2.25 -18.40 16 26 C 0.18 3.78 12.56 180.26 2.26 6.04 16 27 N -0.46 -8.48 3.15 -537.87 -1.70 -10.18 16 28 C 0.06 0.52 10.83 127.77 1.38 1.90 16 29 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.06 1.03 8.12 -2.39 -0.02 1.01 16 33 H 0.11 1.49 7.93 -2.39 -0.02 1.47 16 34 H 0.03 0.82 8.14 -2.38 -0.02 0.80 16 35 H 0.05 2.23 5.82 -2.39 -0.01 2.22 16 36 H 0.06 1.92 6.58 -2.39 -0.02 1.91 16 37 H 0.07 1.82 8.12 -2.39 -0.02 1.80 16 38 H 0.12 2.97 7.93 -2.39 -0.02 2.95 16 39 H 0.40 18.49 7.90 -92.71 -0.73 17.75 16 40 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 41 H 0.41 6.87 8.60 -92.71 -0.80 6.07 16 42 H 0.13 1.42 7.63 -2.39 -0.02 1.40 16 43 H 0.12 2.26 8.14 -2.38 -0.02 2.24 16 44 H 0.15 4.70 8.06 -2.91 -0.02 4.68 16 45 H 0.24 2.68 8.06 -2.91 -0.02 2.66 16 46 H 0.10 0.38 8.14 -2.39 -0.02 0.37 16 47 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 48 H 0.08 0.67 7.67 -2.38 -0.02 0.66 16 Total: -1.00 -82.18 401.08 0.50 -81.68 By element: Atomic # 1 Polarization: 38.22 SS G_CDS: -0.54 Total: 37.68 kcal Atomic # 6 Polarization: 19.36 SS G_CDS: 10.43 Total: 29.80 kcal Atomic # 7 Polarization: -130.68 SS G_CDS: -11.33 Total: -142.01 kcal Atomic # 8 Polarization: -51.71 SS G_CDS: -0.09 Total: -51.80 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -82.18 0.50 -81.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669910222.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.382 kcal (2) G-P(sol) polarization free energy of solvation -82.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds