Wall clock time and date at job start Tue Mar 31 2020 20:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46495 * 109.47180 * 2 1 4 4 N 1.28519 * 124.44191 * 270.24691 * 3 2 1 5 5 C 1.31132 * 109.06216 * 180.20274 * 4 3 2 6 6 C 1.50696 * 127.11602 * 179.86750 * 5 4 3 7 7 C 1.40934 * 105.77365 * 359.59867 * 5 4 3 8 8 C 1.47799 * 127.23503 * 180.22065 * 7 5 4 9 9 O 1.21557 * 119.99965 * 6.22091 * 8 7 5 10 10 N 1.34776 * 119.99831 * 186.22181 * 8 7 5 11 11 C 1.46924 * 120.62899 * 6.50392 * 10 8 7 12 12 C 1.53630 * 108.54402 * 126.36807 * 11 10 8 13 13 C 1.53037 * 109.23916 * 54.85503 * 12 11 10 14 14 C 1.53046 * 109.54077 * 298.51291 * 13 12 11 15 15 C 1.52998 * 109.52513 * 181.33291 * 14 13 12 16 16 O 1.42901 * 109.47071 * 180.14418 * 15 14 13 17 17 N 1.46501 * 109.49427 * 301.41262 * 14 13 12 18 18 C 1.36935 * 119.99644 * 179.83191 * 17 14 13 19 19 H 1.07993 * 120.00164 * 0.02562 * 18 17 14 20 20 C 1.38811 * 119.99544 * 179.97438 * 18 17 14 21 21 N 1.31612 * 120.00675 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99757 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47099 * 90.00232 * 22 20 18 24 24 H 1.48496 * 109.47305 * 210.00274 * 22 20 18 25 25 H 1.48503 * 109.47351 * 330.00366 * 22 20 18 26 26 C 1.46927 * 120.63342 * 186.78502 * 10 8 7 27 27 N 1.28593 * 124.44874 * 90.00034 * 3 2 1 28 28 H 1.09005 * 109.46841 * 300.00618 * 1 2 3 29 29 H 1.08997 * 109.46721 * 60.00011 * 1 2 3 30 30 H 1.08994 * 109.47175 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47028 * 239.99694 * 2 1 3 32 32 H 1.09006 * 109.46780 * 119.99413 * 2 1 3 33 33 H 1.08998 * 109.47224 * 269.68109 * 6 5 4 34 34 H 1.09001 * 109.47429 * 149.67617 * 6 5 4 35 35 H 1.09003 * 109.46757 * 29.67804 * 6 5 4 36 36 H 1.09004 * 109.58830 * 246.20322 * 11 10 8 37 37 H 1.09004 * 109.59191 * 6.62868 * 11 10 8 38 38 H 1.08998 * 109.63151 * 294.86623 * 12 11 10 39 39 H 1.08995 * 109.45978 * 174.74028 * 12 11 10 40 40 H 1.09005 * 109.46220 * 178.48907 * 13 12 11 41 41 H 1.09004 * 109.46399 * 58.53494 * 13 12 11 42 42 H 1.08998 * 109.47165 * 300.14599 * 15 14 13 43 43 H 1.08999 * 109.46851 * 60.14226 * 15 14 13 44 44 H 0.96697 * 113.99754 * 180.02562 * 16 15 14 45 45 H 0.97004 * 120.00267 * 359.84366 * 17 14 13 46 46 H 0.97005 * 120.00780 * 179.97438 * 21 20 18 47 47 H 1.08999 * 109.58042 * 353.36765 * 26 10 8 48 48 H 1.08997 * 109.58434 * 113.65329 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2564 2.0680 -1.0599 5 6 2.6834 3.2581 -0.7121 6 6 3.0823 4.3850 -1.6296 7 6 2.6861 3.2674 0.6972 8 6 3.0811 4.3824 1.5834 9 8 3.3460 5.4703 1.1102 10 7 3.1475 4.1929 2.9161 11 6 2.9698 2.8526 3.4913 12 6 4.1764 2.5430 4.3905 13 6 4.3307 3.6568 5.4286 14 6 4.5892 4.9871 4.7174 15 6 4.7764 6.0944 5.7565 16 8 5.0143 7.3366 5.0913 17 7 5.7982 4.8764 3.8976 18 6 6.2272 5.9489 3.1621 19 1 5.6746 6.8764 3.1869 20 6 7.3731 5.8441 2.3857 21 7 8.0470 4.7140 2.3559 22 14 7.9589 7.3073 1.3830 23 1 8.8879 8.1279 2.2009 24 1 8.6633 6.8248 0.1681 25 1 6.7909 8.1327 0.9829 26 6 3.3928 5.3235 3.8217 27 7 2.2609 2.0670 1.0604 28 1 -0.3633 0.5140 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 4.1473 4.3140 -1.8505 34 1 2.8745 5.3390 -1.1450 35 1 2.5136 4.3171 -2.5570 36 1 2.0541 2.8270 4.0822 37 1 2.9108 2.1159 2.6901 38 1 5.0798 2.4837 3.7835 39 1 4.0162 1.5920 4.8983 40 1 5.1697 3.4272 6.0856 41 1 3.4175 3.7321 6.0190 42 1 3.8771 6.1756 6.3670 43 1 5.6277 5.8546 6.3936 44 1 5.1428 8.0850 5.6899 45 1 6.2947 4.0434 3.8755 46 1 8.8475 4.6406 1.8130 47 1 3.6131 6.2176 3.2385 48 1 2.5101 5.4969 4.4371 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673709503.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:38 Heat of formation + Delta-G solvation = 58.404744 kcal Electronic energy + Delta-G solvation = -31740.890972 eV Core-core repulsion = 27641.951131 eV Total energy + Delta-G solvation = -4098.939842 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.51099 -39.61581 -37.61906 -35.69007 -35.08864 -33.87528 -32.83444 -32.01839 -31.35616 -30.84563 -28.53070 -27.92383 -26.06982 -25.22293 -24.06490 -23.40262 -22.36770 -21.61531 -20.90376 -19.66505 -18.31183 -17.31078 -17.15655 -16.57966 -16.46126 -16.12355 -15.43588 -15.03137 -14.70841 -14.34144 -14.14803 -13.84402 -13.77430 -13.49635 -13.25475 -13.16046 -13.02463 -12.76883 -12.62554 -12.45376 -12.28798 -12.19239 -11.96865 -11.72833 -11.55180 -11.36616 -11.24693 -10.87523 -10.63080 -10.57943 -10.50079 -10.19454 -10.07344 -9.81529 -9.64371 -9.49017 -9.36383 -9.00177 -8.91623 -8.70792 -7.93356 -6.72409 -5.48309 -2.73713 1.54891 2.14684 2.17688 3.46004 3.64019 3.69071 3.75779 3.82661 4.02472 4.53317 4.58846 4.80777 4.83221 4.87790 4.92878 5.05511 5.22224 5.34329 5.35106 5.37109 5.53606 5.57820 5.63562 5.67718 5.71807 5.85254 5.90725 5.94707 5.95382 5.96496 6.08527 6.13026 6.14202 6.16591 6.29012 6.35995 6.47854 6.56677 6.70056 6.80672 6.89029 6.97835 7.23748 7.98536 8.24093 8.31241 8.42671 8.69135 8.78498 9.83007 10.30915 10.66468 11.75499 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011923 B = 0.004699 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.888193 B = 5957.007990 C = 7208.910183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.135 3.865 3 N -0.152 5.152 4 N -0.296 5.296 5 C 0.061 3.939 6 C -0.070 4.070 7 C -0.026 4.026 8 C 0.607 3.393 9 O -0.511 6.511 10 N -0.579 5.579 11 C 0.092 3.908 12 C -0.130 4.130 13 C -0.115 4.115 14 C 0.189 3.811 15 C 0.076 3.924 16 O -0.540 6.540 17 N -0.702 5.702 18 C -0.194 4.194 19 H 0.092 0.908 20 C -0.023 4.023 21 N -0.948 5.948 22 Si 0.901 3.099 23 H -0.297 1.297 24 H -0.298 1.298 25 H -0.280 1.280 26 C 0.112 3.888 27 N -0.254 5.254 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.070 0.930 36 H 0.056 0.944 37 H 0.116 0.884 38 H 0.078 0.922 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.023 0.977 43 H 0.039 0.961 44 H 0.353 0.647 45 H 0.381 0.619 46 H 0.247 0.753 47 H 0.105 0.895 48 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.166 -9.790 1.686 18.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.053 5.053 4 N -0.138 5.138 5 C -0.102 4.102 6 C -0.128 4.128 7 C -0.189 4.189 8 C 0.391 3.609 9 O -0.384 6.384 10 N -0.310 5.310 11 C -0.032 4.032 12 C -0.168 4.168 13 C -0.153 4.153 14 C 0.095 3.905 15 C -0.005 4.005 16 O -0.342 6.342 17 N -0.342 5.342 18 C -0.325 4.325 19 H 0.110 0.890 20 C -0.217 4.217 21 N -0.599 5.599 22 Si 0.734 3.266 23 H -0.225 1.225 24 H -0.225 1.225 25 H -0.206 1.206 26 C -0.013 4.013 27 N -0.101 5.101 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.103 0.897 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.101 0.899 34 H 0.116 0.884 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.133 0.867 38 H 0.097 0.903 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.041 0.959 43 H 0.058 0.942 44 H 0.198 0.802 45 H 0.216 0.784 46 H 0.057 0.943 47 H 0.123 0.877 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -16.513 -10.710 0.780 19.698 hybrid contribution 1.044 1.353 0.141 1.715 sum -15.469 -9.357 0.920 18.102 Atomic orbital electron populations 1.22180 0.93185 1.03727 1.03734 1.22000 0.95943 0.74618 1.05893 1.48178 1.44355 1.13207 0.99561 1.73872 1.19203 1.05276 1.15399 1.23234 1.00363 0.93738 0.92866 1.20247 1.02087 0.94036 0.96461 1.23187 1.07801 0.93444 0.94491 1.16570 0.77733 0.85361 0.81283 1.90789 1.48532 1.24837 1.74230 1.47510 1.69502 1.09104 1.04911 1.22369 0.96868 0.85095 0.98905 1.21927 0.99704 0.97460 0.97720 1.21634 1.01172 0.94910 0.97634 1.19937 0.89068 0.91138 0.90334 1.22753 0.96889 0.86001 0.94832 1.86882 1.94781 1.17019 1.35559 1.42427 1.25148 1.14480 1.52176 1.19523 1.04906 0.92006 1.16111 0.89043 1.24637 0.98810 0.96812 1.01411 1.69660 1.19843 1.24752 1.45646 0.86221 0.78238 0.82532 0.79588 1.22530 1.22510 1.20607 1.22162 0.96385 0.90116 0.92595 1.74212 1.16578 1.04598 1.14743 0.91359 0.91435 0.89677 0.87379 0.87271 0.89932 0.88356 0.91082 0.92533 0.86732 0.90321 0.91719 0.91653 0.92086 0.95866 0.94228 0.80207 0.78414 0.94282 0.87660 0.93569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.12 10.24 37.16 0.38 -0.74 16 2 C 0.13 1.11 7.24 -4.04 -0.03 1.08 16 3 N -0.15 -2.09 3.94 -10.61 -0.04 -2.13 16 4 N -0.30 -4.64 12.01 33.92 0.41 -4.24 16 5 C 0.06 1.07 7.39 -81.87 -0.61 0.46 16 6 C -0.07 -1.09 10.06 36.00 0.36 -0.73 16 7 C -0.03 -0.49 6.88 -82.68 -0.57 -1.06 16 8 C 0.61 12.83 7.69 -12.35 -0.10 12.74 16 9 O -0.51 -12.34 14.60 5.32 0.08 -12.26 16 10 N -0.58 -11.10 2.88 -173.63 -0.50 -11.60 16 11 C 0.09 1.44 6.17 -3.48 -0.02 1.42 16 12 C -0.13 -2.02 5.93 -26.38 -0.16 -2.18 16 13 C -0.12 -1.81 4.76 -26.69 -0.13 -1.93 16 14 C 0.19 3.66 0.68 -131.70 -0.09 3.57 16 15 C 0.08 1.34 6.08 37.16 0.23 1.57 16 16 O -0.54 -10.39 10.11 -35.23 -0.36 -10.75 16 17 N -0.70 -17.37 4.75 -47.12 -0.22 -17.60 16 18 C -0.19 -5.51 8.21 -15.06 -0.12 -5.63 16 19 H 0.09 2.66 5.28 -52.49 -0.28 2.39 16 20 C -0.02 -0.71 5.50 -17.43 -0.10 -0.80 16 21 N -0.95 -29.78 13.06 55.49 0.72 -29.05 16 22 Si 0.90 24.48 29.55 -169.99 -5.02 19.46 16 23 H -0.30 -7.97 7.11 56.52 0.40 -7.57 16 24 H -0.30 -8.19 7.11 56.52 0.40 -7.79 16 25 H -0.28 -7.61 7.11 56.52 0.40 -7.21 16 26 C 0.11 2.19 4.86 -3.71 -0.02 2.17 16 27 N -0.25 -4.02 8.64 33.42 0.29 -3.73 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.10 1.65 6.67 -51.93 -0.35 1.31 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.12 1.81 4.16 -66.58 -0.28 1.54 16 38 H 0.08 1.51 6.75 -51.93 -0.35 1.16 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.35 5.00 9.12 45.56 0.42 5.41 16 45 H 0.38 10.18 6.43 -40.82 -0.26 9.92 16 46 H 0.25 7.67 8.31 -40.82 -0.34 7.33 16 47 H 0.11 2.48 5.69 -51.93 -0.30 2.18 16 48 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 378.94 15.07 5.71 5.71 Total: -1.00 -36.94 378.94 -6.35 -43.29 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: -6.45 Total: 12.96 kcal Atomic # 6 Polarization: 10.90 SS G_CDS: -0.96 Total: 9.94 kcal Atomic # 7 Polarization: -69.00 SS G_CDS: 0.65 Total: -68.35 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -0.28 Total: -23.01 kcal Atomic # 14 Polarization: 24.48 SS G_CDS: -5.02 Total: 19.46 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.94 -6.35 -43.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673709503.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.695 kcal (2) G-P(sol) polarization free energy of solvation -36.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds