Wall clock time and date at job start Tue Mar 31 2020 20:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46495 * 109.47180 * 2 1 4 4 N 1.28519 * 124.44191 * 270.24691 * 3 2 1 5 5 C 1.31132 * 109.06216 * 180.20274 * 4 3 2 6 6 C 1.50696 * 127.11602 * 179.86750 * 5 4 3 7 7 C 1.40934 * 105.77365 * 359.59867 * 5 4 3 8 8 C 1.47799 * 127.23503 * 180.22065 * 7 5 4 9 9 O 1.21557 * 119.99965 * 6.22091 * 8 7 5 10 10 N 1.34776 * 119.99831 * 186.22181 * 8 7 5 11 11 C 1.46924 * 120.62899 * 6.50392 * 10 8 7 12 12 C 1.53630 * 108.54402 * 126.36807 * 11 10 8 13 13 C 1.53037 * 109.23916 * 54.85503 * 12 11 10 14 14 C 1.53046 * 109.54077 * 298.51291 * 13 12 11 15 15 C 1.52998 * 109.52513 * 181.33291 * 14 13 12 16 16 O 1.42901 * 109.47071 * 180.14418 * 15 14 13 17 17 N 1.46501 * 109.49427 * 301.41262 * 14 13 12 18 18 C 1.36935 * 119.99644 * 179.83191 * 17 14 13 19 19 H 1.07993 * 120.00164 * 0.02562 * 18 17 14 20 20 C 1.38811 * 119.99544 * 179.97438 * 18 17 14 21 21 N 1.31612 * 120.00675 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99757 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47099 * 90.00232 * 22 20 18 24 24 H 1.48496 * 109.47305 * 210.00274 * 22 20 18 25 25 H 1.48503 * 109.47351 * 330.00366 * 22 20 18 26 26 C 1.46927 * 120.63342 * 186.78502 * 10 8 7 27 27 N 1.28593 * 124.44874 * 90.00034 * 3 2 1 28 28 H 1.09005 * 109.46841 * 300.00618 * 1 2 3 29 29 H 1.08997 * 109.46721 * 60.00011 * 1 2 3 30 30 H 1.08994 * 109.47175 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47028 * 239.99694 * 2 1 3 32 32 H 1.09006 * 109.46780 * 119.99413 * 2 1 3 33 33 H 1.08998 * 109.47224 * 269.68109 * 6 5 4 34 34 H 1.09001 * 109.47429 * 149.67617 * 6 5 4 35 35 H 1.09003 * 109.46757 * 29.67804 * 6 5 4 36 36 H 1.09004 * 109.58830 * 246.20322 * 11 10 8 37 37 H 1.09004 * 109.59191 * 6.62868 * 11 10 8 38 38 H 1.08998 * 109.63151 * 294.86623 * 12 11 10 39 39 H 1.08995 * 109.45978 * 174.74028 * 12 11 10 40 40 H 1.09005 * 109.46220 * 178.48907 * 13 12 11 41 41 H 1.09004 * 109.46399 * 58.53494 * 13 12 11 42 42 H 1.08998 * 109.47165 * 300.14599 * 15 14 13 43 43 H 1.08999 * 109.46851 * 60.14226 * 15 14 13 44 44 H 0.96697 * 113.99754 * 180.02562 * 16 15 14 45 45 H 0.97004 * 120.00267 * 359.84366 * 17 14 13 46 46 H 0.97005 * 120.00780 * 179.97438 * 21 20 18 47 47 H 1.08999 * 109.58042 * 353.36765 * 26 10 8 48 48 H 1.08997 * 109.58434 * 113.65329 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2564 2.0680 -1.0599 5 6 2.6834 3.2581 -0.7121 6 6 3.0823 4.3850 -1.6296 7 6 2.6861 3.2674 0.6972 8 6 3.0811 4.3824 1.5834 9 8 3.3460 5.4703 1.1102 10 7 3.1475 4.1929 2.9161 11 6 2.9698 2.8526 3.4913 12 6 4.1764 2.5430 4.3905 13 6 4.3307 3.6568 5.4286 14 6 4.5892 4.9871 4.7174 15 6 4.7764 6.0944 5.7565 16 8 5.0143 7.3366 5.0913 17 7 5.7982 4.8764 3.8976 18 6 6.2272 5.9489 3.1621 19 1 5.6746 6.8764 3.1869 20 6 7.3731 5.8441 2.3857 21 7 8.0470 4.7140 2.3559 22 14 7.9589 7.3073 1.3830 23 1 8.8879 8.1279 2.2009 24 1 8.6633 6.8248 0.1681 25 1 6.7909 8.1327 0.9829 26 6 3.3928 5.3235 3.8217 27 7 2.2609 2.0670 1.0604 28 1 -0.3633 0.5140 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 4.1473 4.3140 -1.8505 34 1 2.8745 5.3390 -1.1450 35 1 2.5136 4.3171 -2.5570 36 1 2.0541 2.8270 4.0822 37 1 2.9108 2.1159 2.6901 38 1 5.0798 2.4837 3.7835 39 1 4.0162 1.5920 4.8983 40 1 5.1697 3.4272 6.0856 41 1 3.4175 3.7321 6.0190 42 1 3.8771 6.1756 6.3670 43 1 5.6277 5.8546 6.3936 44 1 5.1428 8.0850 5.6899 45 1 6.2947 4.0434 3.8755 46 1 8.8475 4.6406 1.8130 47 1 3.6131 6.2176 3.2385 48 1 2.5101 5.4969 4.4371 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673709503.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:37 Heat of formation + Delta-G solvation = 28.709001 kcal Electronic energy + Delta-G solvation = -31742.178676 eV Core-core repulsion = 27641.951131 eV Total energy + Delta-G solvation = -4100.227546 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.73887 -41.12112 -39.18524 -37.14725 -36.05105 -35.59692 -34.35773 -33.56097 -32.57730 -32.25860 -30.40113 -29.11617 -27.40190 -26.56573 -25.56988 -25.15605 -23.45341 -22.96754 -22.08777 -21.10687 -19.84482 -19.18274 -18.31263 -17.89312 -17.76225 -17.73574 -17.00120 -16.58450 -16.02469 -15.69168 -15.65592 -15.42551 -15.04576 -14.97512 -14.69917 -14.47985 -14.38489 -14.17629 -13.77765 -13.68581 -13.52707 -13.43177 -13.19283 -13.00284 -12.88220 -12.71312 -12.65246 -12.57185 -12.34182 -12.21201 -12.05662 -11.85816 -11.46858 -11.36849 -11.28814 -11.17156 -10.99128 -10.71319 -10.52140 -10.24510 -9.48440 -8.76842 -7.77000 -4.97939 0.23651 0.81949 1.20110 1.42889 1.46019 1.55581 2.02682 2.32989 2.68027 2.80654 3.42933 3.60178 3.71821 3.77457 3.91230 3.93604 3.96359 4.05689 4.13657 4.20822 4.25429 4.33883 4.41366 4.52703 4.59038 4.64350 4.67466 4.70334 4.78037 4.79979 4.82756 4.86014 4.91137 4.96735 5.04900 5.07075 5.17293 5.21023 5.28878 5.45934 5.51880 5.65598 5.83654 5.96002 6.46970 6.50264 7.03104 7.20226 7.25868 7.56224 8.25391 8.47648 9.47744 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011923 B = 0.004699 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.888193 B = 5957.007990 C = 7208.910183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.116 3.884 3 N -0.132 5.132 4 N -0.294 5.294 5 C 0.041 3.959 6 C -0.066 4.066 7 C -0.061 4.061 8 C 0.594 3.406 9 O -0.560 6.560 10 N -0.580 5.580 11 C 0.089 3.911 12 C -0.125 4.125 13 C -0.109 4.109 14 C 0.175 3.825 15 C 0.077 3.923 16 O -0.573 6.573 17 N -0.710 5.710 18 C -0.162 4.162 19 H 0.083 0.917 20 C -0.091 4.091 21 N -0.981 5.981 22 Si 0.947 3.053 23 H -0.291 1.291 24 H -0.306 1.306 25 H -0.285 1.285 26 C 0.116 3.884 27 N -0.239 5.239 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.120 0.880 31 H 0.129 0.871 32 H 0.133 0.867 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.114 0.886 38 H 0.033 0.967 39 H 0.105 0.895 40 H 0.068 0.932 41 H 0.103 0.897 42 H 0.069 0.931 43 H 0.036 0.964 44 H 0.376 0.624 45 H 0.369 0.631 46 H 0.238 0.762 47 H 0.059 0.941 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.778 -11.964 3.529 22.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.001 4.001 3 N -0.037 5.037 4 N -0.136 5.136 5 C -0.121 4.121 6 C -0.124 4.124 7 C -0.221 4.221 8 C 0.380 3.620 9 O -0.437 6.437 10 N -0.311 5.311 11 C -0.033 4.033 12 C -0.163 4.163 13 C -0.146 4.146 14 C 0.084 3.916 15 C -0.003 4.003 16 O -0.379 6.379 17 N -0.349 5.349 18 C -0.294 4.294 19 H 0.101 0.899 20 C -0.281 4.281 21 N -0.636 5.636 22 Si 0.781 3.219 23 H -0.219 1.219 24 H -0.233 1.233 25 H -0.211 1.211 26 C -0.009 4.009 27 N -0.089 5.089 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.138 0.862 31 H 0.147 0.853 32 H 0.151 0.849 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.118 0.882 36 H 0.110 0.890 37 H 0.131 0.869 38 H 0.052 0.948 39 H 0.123 0.877 40 H 0.087 0.913 41 H 0.121 0.879 42 H 0.087 0.913 43 H 0.054 0.946 44 H 0.223 0.777 45 H 0.202 0.798 46 H 0.047 0.953 47 H 0.077 0.923 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -19.175 -12.869 2.690 23.249 hybrid contribution 1.655 1.898 -0.351 2.543 sum -17.520 -10.971 2.339 20.803 Atomic orbital electron populations 1.22160 0.91529 1.05661 1.02652 1.22708 0.97275 0.71943 1.08161 1.48930 1.41744 1.14314 0.98690 1.73868 1.19148 1.04715 1.15908 1.23442 1.01066 0.94724 0.92845 1.20192 1.01897 0.92958 0.97378 1.22882 1.10516 0.94073 0.94666 1.17017 0.77324 0.85511 0.82195 1.90747 1.50897 1.26799 1.75228 1.47704 1.68505 1.10438 1.04409 1.22616 0.98392 0.83088 0.99218 1.21890 0.97530 0.99543 0.97322 1.21644 1.03286 0.92250 0.97469 1.20429 0.86520 0.94408 0.90293 1.22690 0.98805 0.84725 0.94043 1.86789 1.95028 1.18469 1.37616 1.42558 1.26889 1.12840 1.52603 1.19641 1.03211 0.92433 1.14150 0.89904 1.25187 1.00308 0.98700 1.03875 1.69781 1.20399 1.26124 1.47316 0.85457 0.77519 0.80561 0.78399 1.21856 1.23318 1.21132 1.22045 0.97835 0.88770 0.92218 1.74142 1.15950 1.03604 1.15177 0.92266 0.92633 0.86194 0.85345 0.84894 0.90904 0.90216 0.88175 0.88976 0.86900 0.94799 0.87719 0.91338 0.87890 0.91341 0.94580 0.77656 0.79837 0.95326 0.92265 0.89961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 10.24 71.98 0.74 -0.86 16 2 C 0.12 1.53 7.24 86.38 0.63 2.15 16 3 N -0.13 -3.41 3.94 -187.49 -0.74 -4.15 16 4 N -0.29 -8.95 12.01 -46.58 -0.56 -9.51 16 5 C 0.04 1.46 7.39 43.32 0.32 1.78 16 6 C -0.07 -2.15 10.06 71.23 0.72 -1.43 16 7 C -0.06 -2.31 6.88 42.24 0.29 -2.02 16 8 C 0.59 25.94 7.69 86.77 0.67 26.61 16 9 O -0.56 -28.71 14.60 -3.90 -0.06 -28.77 16 10 N -0.58 -21.96 2.88 -821.52 -2.37 -24.33 16 11 C 0.09 2.57 6.17 86.51 0.53 3.10 16 12 C -0.12 -3.55 5.93 30.82 0.18 -3.37 16 13 C -0.11 -3.02 4.76 30.62 0.15 -2.87 16 14 C 0.17 6.50 0.68 3.68 0.00 6.50 16 15 C 0.08 2.54 6.08 71.98 0.44 2.98 16 16 O -0.57 -21.55 10.11 -148.98 -1.51 -23.05 16 17 N -0.71 -35.63 4.75 -303.00 -1.44 -37.07 16 18 C -0.16 -9.42 8.21 84.03 0.69 -8.73 16 19 H 0.08 4.97 5.28 -2.91 -0.02 4.96 16 20 C -0.09 -5.70 5.50 84.86 0.47 -5.24 16 21 N -0.98 -64.05 13.06 21.65 0.28 -63.76 16 22 Si 0.95 52.38 29.55 68.60 2.03 54.41 16 23 H -0.29 -15.52 7.11 99.48 0.71 -14.81 16 24 H -0.31 -17.09 7.11 99.48 0.71 -16.39 16 25 H -0.29 -15.75 7.11 99.48 0.71 -15.04 16 26 C 0.12 4.42 4.86 86.36 0.42 4.84 16 27 N -0.24 -7.27 8.64 -48.16 -0.42 -7.68 16 28 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 29 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.13 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.08 2.90 6.67 -2.39 -0.02 2.88 16 35 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 36 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.11 3.34 4.16 -21.34 -0.09 3.25 16 38 H 0.03 1.28 6.75 -2.39 -0.02 1.26 16 39 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 41 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.38 10.13 9.12 -74.06 -0.68 9.45 16 45 H 0.37 20.21 6.43 -92.71 -0.60 19.62 16 46 H 0.24 15.39 8.31 -92.70 -0.77 14.62 16 47 H 0.06 2.85 5.69 -2.39 -0.01 2.84 16 48 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -86.36 378.94 1.12 -85.24 By element: Atomic # 1 Polarization: 35.58 SS G_CDS: -0.34 Total: 35.24 kcal Atomic # 6 Polarization: 17.21 SS G_CDS: 6.24 Total: 23.45 kcal Atomic # 7 Polarization: -141.28 SS G_CDS: -5.24 Total: -146.52 kcal Atomic # 8 Polarization: -50.26 SS G_CDS: -1.56 Total: -51.82 kcal Atomic # 14 Polarization: 52.38 SS G_CDS: 2.03 Total: 54.41 kcal Total: -86.36 1.12 -85.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673709503.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.952 kcal (2) G-P(sol) polarization free energy of solvation -86.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds