Wall clock time and date at job start Tue Mar 31 2020 19:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 N 1.46898 * 109.47006 * 120.00340 * 2 1 3 5 5 C 1.46906 * 110.99961 * 275.00030 * 4 2 1 6 6 C 1.50699 * 109.46941 * 180.02562 * 5 4 2 7 7 O 1.21290 * 120.00122 * 359.97438 * 6 5 4 8 8 N 1.34781 * 119.99486 * 180.02562 * 6 5 4 9 9 C 1.37100 * 119.99314 * 180.02562 * 8 6 5 10 10 H 1.07995 * 120.00247 * 359.97438 * 9 8 6 11 11 C 1.38953 * 119.99599 * 180.02562 * 9 8 6 12 12 N 1.31413 * 120.00095 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99990 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47057 * 89.99501 * 13 11 9 15 15 H 1.48500 * 109.47021 * 209.99844 * 13 11 9 16 16 H 1.48500 * 109.47145 * 329.99667 * 13 11 9 17 17 C 1.52997 * 109.47164 * 240.00295 * 2 1 3 18 18 H 1.09001 * 109.47375 * 300.00034 * 17 2 1 19 19 C 1.52996 * 109.46975 * 179.97438 * 17 2 1 20 20 N 1.46507 * 109.47235 * 59.99744 * 17 2 1 21 21 C 1.34773 * 120.00082 * 204.99815 * 20 17 2 22 22 O 1.21279 * 119.99976 * 0.02562 * 21 20 17 23 23 C 1.50703 * 119.99847 * 180.02562 * 21 20 17 24 24 C 1.52995 * 109.47163 * 179.97438 * 23 21 20 25 25 N 1.46499 * 109.47197 * 179.97438 * 24 23 21 26 26 C 1.36877 * 126.39615 * 90.00452 * 25 24 23 27 27 C 1.34663 * 106.82111 * 179.97438 * 26 25 24 28 28 N 1.34131 * 108.01951 * 0.02562 * 27 26 25 29 29 C 1.30504 * 109.25448 * 359.72309 * 28 27 26 30 30 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 32 32 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 33 33 H 1.00895 * 110.99835 * 151.05029 * 4 2 1 34 34 H 1.08996 * 109.46904 * 300.00505 * 5 4 2 35 35 H 1.08996 * 109.46971 * 60.00210 * 5 4 2 36 36 H 0.96999 * 120.00031 * 359.97438 * 8 6 5 37 37 H 0.96997 * 119.99888 * 180.02562 * 12 11 9 38 38 H 1.09004 * 109.47108 * 180.02562 * 19 17 2 39 39 H 1.09001 * 109.47367 * 299.99815 * 19 17 2 40 40 H 1.09004 * 109.47368 * 60.00217 * 19 17 2 41 41 H 0.97000 * 119.99510 * 25.00567 * 20 17 2 42 42 H 1.09003 * 109.46851 * 300.00227 * 23 21 20 43 43 H 1.09002 * 109.47083 * 59.99915 * 23 21 20 44 44 H 1.09001 * 109.47206 * 300.00343 * 24 23 21 45 45 H 1.09002 * 109.47015 * 60.00088 * 24 23 21 46 46 H 1.08002 * 126.59225 * 359.96382 * 26 25 24 47 47 H 1.08006 * 125.99307 * 180.02562 * 27 26 25 48 48 H 1.07999 * 125.64880 * 180.29554 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0825 0.2225 2.3469 6 6 2.5885 -0.5217 3.5557 7 8 2.8688 -1.6986 3.4698 8 7 2.7286 0.1204 4.7324 9 6 3.1895 -0.5566 5.8319 10 1 3.4398 -1.6043 5.7553 11 6 3.3334 0.1052 7.0452 12 7 3.0283 1.3800 7.1386 13 14 3.9607 -0.8172 8.5436 14 1 5.4415 -0.7221 8.5994 15 1 3.3795 -0.2189 9.7723 16 1 3.5595 -2.2439 8.4504 17 6 2.0401 -0.7212 -1.2492 18 1 1.6767 -1.7488 -1.2493 19 6 3.5700 -0.7206 -1.2495 20 7 1.5517 -0.0305 -2.4455 21 6 1.4230 -0.7028 -3.6064 22 8 1.7111 -1.8796 -3.6608 23 6 0.9212 0.0078 -4.8370 24 6 0.8703 -0.9751 -6.0084 25 7 0.3818 -0.2844 -7.2045 26 6 1.1458 0.3649 -8.1363 27 6 0.2991 0.8535 -9.0625 28 7 -0.9480 0.5122 -8.7057 29 6 -0.9057 -0.1743 -7.5966 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 2.9173 -1.1205 1.0287 34 1 2.7588 1.0461 2.1183 35 1 1.0871 0.6161 2.5526 36 1 2.5041 1.0615 4.8011 37 1 3.1291 1.8421 7.9855 38 1 3.9334 -1.2340 -2.1398 39 1 3.9330 0.3072 -1.2497 40 1 3.9338 -1.2342 -0.3596 41 1 1.3210 0.9107 -2.4018 42 1 -0.0780 0.4003 -4.6478 43 1 1.5941 0.8297 -5.0818 44 1 1.8696 -1.3672 -6.1974 45 1 0.1976 -1.7972 -5.7639 46 1 2.2211 0.4662 -8.1298 47 1 0.5757 1.4207 -9.9390 48 1 -1.7592 -0.5845 -7.0773 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674706714.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:57 Heat of formation + Delta-G solvation = -11.589913 kcal Electronic energy + Delta-G solvation = -27969.348256 eV Core-core repulsion = 23867.373218 eV Total energy + Delta-G solvation = -4101.975038 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.42566 -40.39874 -38.57565 -37.45515 -35.25510 -34.59430 -33.85696 -31.70437 -31.24248 -30.33972 -29.93025 -29.66660 -26.48909 -25.35577 -24.31055 -23.20048 -21.72169 -21.32115 -20.82474 -20.48547 -19.35681 -18.27470 -17.97207 -17.16061 -16.70028 -16.24967 -16.04707 -15.59677 -15.46048 -14.82491 -14.66729 -14.47444 -14.26943 -14.16804 -13.94931 -13.90613 -13.63224 -13.57473 -13.43272 -13.07985 -12.93270 -12.53787 -12.46409 -12.01788 -11.97467 -11.78405 -11.65682 -11.50904 -11.41704 -11.07921 -10.73259 -10.45583 -10.42009 -10.33688 -10.25175 -10.01119 -9.54693 -9.46845 -8.92225 -8.51709 -8.17584 -8.00228 -6.45455 -3.86346 1.63136 2.17096 2.20165 2.79997 2.83771 3.15255 3.24343 3.30404 3.85879 4.03798 4.05380 4.10266 4.24264 4.27903 4.34780 4.47292 4.57746 4.71877 4.74208 4.81777 5.00688 5.06681 5.08113 5.15229 5.20871 5.25655 5.31556 5.38319 5.52515 5.57731 5.70178 5.75552 5.85080 5.85951 5.89951 6.01904 6.10489 6.17691 6.27097 6.33851 6.75298 7.03627 7.11819 7.51858 7.55235 7.68976 7.76895 8.02319 8.56992 9.14121 9.49902 10.01134 10.72182 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.042223 B = 0.001495 C = 0.001478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.981541 B =18723.874414 C =18934.309526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.077 3.923 3 H 0.046 0.954 4 N -0.661 5.661 5 C 0.052 3.948 6 C 0.440 3.560 7 O -0.582 6.582 8 N -0.563 5.563 9 C -0.300 4.300 10 H 0.103 0.897 11 C 0.023 3.977 12 N -0.902 5.902 13 Si 0.930 3.070 14 H -0.278 1.278 15 H -0.283 1.283 16 H -0.269 1.269 17 C 0.140 3.860 18 H 0.101 0.899 19 C -0.170 4.170 20 N -0.718 5.718 21 C 0.520 3.480 22 O -0.537 6.537 23 C -0.158 4.158 24 C 0.120 3.880 25 N -0.459 5.459 26 C -0.057 4.057 27 C -0.031 4.031 28 N -0.497 5.497 29 C 0.182 3.818 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.352 0.648 34 H 0.044 0.956 35 H 0.087 0.913 36 H 0.392 0.608 37 H 0.272 0.728 38 H 0.064 0.936 39 H 0.056 0.944 40 H 0.075 0.925 41 H 0.400 0.600 42 H 0.103 0.897 43 H 0.101 0.899 44 H 0.101 0.899 45 H 0.105 0.895 46 H 0.174 0.826 47 H 0.169 0.831 48 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.265 3.740 -26.303 26.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.033 4.033 3 H 0.064 0.936 4 N -0.296 5.296 5 C -0.081 4.081 6 C 0.225 3.775 7 O -0.467 6.467 8 N -0.199 5.199 9 C -0.430 4.430 10 H 0.121 0.879 11 C -0.179 4.179 12 N -0.543 5.543 13 Si 0.757 3.243 14 H -0.204 1.204 15 H -0.209 1.209 16 H -0.194 1.194 17 C 0.036 3.964 18 H 0.119 0.881 19 C -0.229 4.229 20 N -0.369 5.369 21 C 0.305 3.695 22 O -0.413 6.413 23 C -0.198 4.198 24 C -0.003 4.003 25 N -0.142 5.142 26 C -0.190 4.190 27 C -0.179 4.179 28 N -0.215 5.215 29 C -0.101 4.101 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.174 0.826 34 H 0.062 0.938 35 H 0.105 0.895 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.093 0.907 41 H 0.235 0.765 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.123 0.877 46 H 0.191 0.809 47 H 0.186 0.814 48 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -5.122 2.087 -26.351 26.925 hybrid contribution 1.610 1.198 1.235 2.356 sum -3.511 3.285 -25.116 25.573 Atomic orbital electron populations 1.21809 0.94127 1.02805 1.01025 1.21738 0.96560 0.95840 0.89206 0.93574 1.60176 1.35370 1.31866 1.02236 1.21723 1.01358 0.93814 0.91204 1.19775 0.85081 0.88214 0.84432 1.90531 1.55316 1.16091 1.84723 1.41857 1.57672 1.12436 1.07962 1.19714 1.39960 0.96509 0.86802 0.87883 1.25262 0.97589 0.95785 0.99235 1.69609 1.48545 1.08902 1.27226 0.85854 0.78763 0.79549 0.80116 1.20417 1.20902 1.19374 1.21122 0.94004 0.98292 0.83031 0.88100 1.22259 0.95086 1.02259 1.03273 1.46000 1.67210 1.14074 1.09662 1.20240 0.77748 0.87243 0.84304 1.90765 1.49867 1.15771 1.84943 1.22000 1.04592 1.00064 0.93187 1.21601 1.03225 0.94047 0.81377 1.45643 1.07851 1.41059 1.19690 1.22791 0.98628 1.04131 0.93412 1.22335 0.88578 1.05580 1.01387 1.70318 1.24060 1.14979 1.12150 1.25076 0.86806 1.02631 0.95548 0.91696 0.92206 0.93021 0.82564 0.93832 0.89519 0.77478 0.91858 0.91707 0.92477 0.90655 0.76520 0.87915 0.88067 0.88019 0.87719 0.80923 0.81405 0.77907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.26 37.16 0.34 -1.06 16 2 C 0.08 0.82 2.28 -67.71 -0.15 0.67 16 3 H 0.05 0.44 7.80 -51.93 -0.40 0.04 16 4 N -0.66 -9.90 5.93 -107.99 -0.64 -10.54 16 5 C 0.05 0.86 5.97 -4.97 -0.03 0.83 16 6 C 0.44 10.10 7.82 -10.98 -0.09 10.01 16 7 O -0.58 -15.54 15.78 5.55 0.09 -15.45 16 8 N -0.56 -13.95 5.29 -10.96 -0.06 -14.01 16 9 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 10 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 11 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 12 N -0.90 -24.13 13.05 55.50 0.72 -23.41 16 13 Si 0.93 20.80 29.55 -169.99 -5.02 15.77 16 14 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 15 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 16 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 17 C 0.14 1.37 2.29 -67.93 -0.16 1.22 16 18 H 0.10 1.24 7.58 -51.93 -0.39 0.85 16 19 C -0.17 -1.69 9.25 37.16 0.34 -1.34 16 20 N -0.72 -4.97 4.38 -53.80 -0.24 -5.21 16 21 C 0.52 3.94 7.79 -10.99 -0.09 3.86 16 22 O -0.54 -6.23 15.64 5.56 0.09 -6.14 16 23 C -0.16 -0.67 6.02 -27.88 -0.17 -0.84 16 24 C 0.12 0.60 5.44 -4.05 -0.02 0.58 16 25 N -0.46 -2.87 2.75 -118.58 -0.33 -3.20 16 26 C -0.06 -0.37 11.58 -16.57 -0.19 -0.56 16 27 C -0.03 -0.25 11.87 -17.81 -0.21 -0.46 16 28 N -0.50 -4.97 11.25 -14.66 -0.16 -5.13 16 29 C 0.18 1.34 12.56 -90.37 -1.14 0.21 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.64 7.45 -51.93 -0.39 0.25 16 32 H 0.05 0.39 7.45 -51.93 -0.39 0.00 16 33 H 0.35 5.49 5.87 -39.29 -0.23 5.26 16 34 H 0.04 0.64 8.05 -51.93 -0.42 0.23 16 35 H 0.09 1.33 7.44 -51.93 -0.39 0.95 16 36 H 0.39 9.25 7.90 -40.82 -0.32 8.93 16 37 H 0.27 6.88 8.31 -40.82 -0.34 6.55 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.83 6.21 -51.93 -0.32 0.51 16 41 H 0.40 1.79 8.39 -40.82 -0.34 1.44 16 42 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 43 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.10 0.54 8.10 -51.93 -0.42 0.12 16 45 H 0.10 0.53 8.10 -51.93 -0.42 0.11 16 46 H 0.17 0.66 8.06 -52.49 -0.42 0.23 16 47 H 0.17 1.01 8.06 -52.48 -0.42 0.58 16 48 H 0.20 0.88 8.06 -52.49 -0.42 0.45 16 LS Contribution 402.94 15.07 6.07 6.07 Total: -1.00 -35.04 402.94 -8.60 -43.64 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: -7.33 Total: 12.40 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -1.79 Total: 5.21 kcal Atomic # 7 Polarization: -60.80 SS G_CDS: -0.70 Total: -61.50 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: 0.17 Total: -21.59 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.04 -8.60 -43.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674706714.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.052 kcal (2) G-P(sol) polarization free energy of solvation -35.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds