Wall clock time and date at job start Tue Mar 31 2020 19:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 N 1.46898 * 109.47006 * 120.00340 * 2 1 3 5 5 C 1.46906 * 110.99961 * 275.00030 * 4 2 1 6 6 C 1.50699 * 109.46941 * 180.02562 * 5 4 2 7 7 O 1.21290 * 120.00122 * 359.97438 * 6 5 4 8 8 N 1.34781 * 119.99486 * 180.02562 * 6 5 4 9 9 C 1.37100 * 119.99314 * 180.02562 * 8 6 5 10 10 H 1.07995 * 120.00247 * 359.97438 * 9 8 6 11 11 C 1.38953 * 119.99599 * 180.02562 * 9 8 6 12 12 N 1.31413 * 120.00095 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99990 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47057 * 89.99501 * 13 11 9 15 15 H 1.48500 * 109.47021 * 209.99844 * 13 11 9 16 16 H 1.48500 * 109.47145 * 329.99667 * 13 11 9 17 17 C 1.52997 * 109.47164 * 240.00295 * 2 1 3 18 18 H 1.09001 * 109.47375 * 300.00034 * 17 2 1 19 19 C 1.52996 * 109.46975 * 179.97438 * 17 2 1 20 20 N 1.46507 * 109.47235 * 59.99744 * 17 2 1 21 21 C 1.34773 * 120.00082 * 204.99815 * 20 17 2 22 22 O 1.21279 * 119.99976 * 0.02562 * 21 20 17 23 23 C 1.50703 * 119.99847 * 180.02562 * 21 20 17 24 24 C 1.52995 * 109.47163 * 179.97438 * 23 21 20 25 25 N 1.46499 * 109.47197 * 179.97438 * 24 23 21 26 26 C 1.36877 * 126.39615 * 90.00452 * 25 24 23 27 27 C 1.34663 * 106.82111 * 179.97438 * 26 25 24 28 28 N 1.34131 * 108.01951 * 0.02562 * 27 26 25 29 29 C 1.30504 * 109.25448 * 359.72309 * 28 27 26 30 30 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 32 32 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 33 33 H 1.00895 * 110.99835 * 151.05029 * 4 2 1 34 34 H 1.08996 * 109.46904 * 300.00505 * 5 4 2 35 35 H 1.08996 * 109.46971 * 60.00210 * 5 4 2 36 36 H 0.96999 * 120.00031 * 359.97438 * 8 6 5 37 37 H 0.96997 * 119.99888 * 180.02562 * 12 11 9 38 38 H 1.09004 * 109.47108 * 180.02562 * 19 17 2 39 39 H 1.09001 * 109.47367 * 299.99815 * 19 17 2 40 40 H 1.09004 * 109.47368 * 60.00217 * 19 17 2 41 41 H 0.97000 * 119.99510 * 25.00567 * 20 17 2 42 42 H 1.09003 * 109.46851 * 300.00227 * 23 21 20 43 43 H 1.09002 * 109.47083 * 59.99915 * 23 21 20 44 44 H 1.09001 * 109.47206 * 300.00343 * 24 23 21 45 45 H 1.09002 * 109.47015 * 60.00088 * 24 23 21 46 46 H 1.08002 * 126.59225 * 359.96382 * 26 25 24 47 47 H 1.08006 * 125.99307 * 180.02562 * 27 26 25 48 48 H 1.07999 * 125.64880 * 180.29554 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0825 0.2225 2.3469 6 6 2.5885 -0.5217 3.5557 7 8 2.8688 -1.6986 3.4698 8 7 2.7286 0.1204 4.7324 9 6 3.1895 -0.5566 5.8319 10 1 3.4398 -1.6043 5.7553 11 6 3.3334 0.1052 7.0452 12 7 3.0283 1.3800 7.1386 13 14 3.9607 -0.8172 8.5436 14 1 5.4415 -0.7221 8.5994 15 1 3.3795 -0.2189 9.7723 16 1 3.5595 -2.2439 8.4504 17 6 2.0401 -0.7212 -1.2492 18 1 1.6767 -1.7488 -1.2493 19 6 3.5700 -0.7206 -1.2495 20 7 1.5517 -0.0305 -2.4455 21 6 1.4230 -0.7028 -3.6064 22 8 1.7111 -1.8796 -3.6608 23 6 0.9212 0.0078 -4.8370 24 6 0.8703 -0.9751 -6.0084 25 7 0.3818 -0.2844 -7.2045 26 6 1.1458 0.3649 -8.1363 27 6 0.2991 0.8535 -9.0625 28 7 -0.9480 0.5122 -8.7057 29 6 -0.9057 -0.1743 -7.5966 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 2.9173 -1.1205 1.0287 34 1 2.7588 1.0461 2.1183 35 1 1.0871 0.6161 2.5526 36 1 2.5041 1.0615 4.8011 37 1 3.1291 1.8421 7.9855 38 1 3.9334 -1.2340 -2.1398 39 1 3.9330 0.3072 -1.2497 40 1 3.9338 -1.2342 -0.3596 41 1 1.3210 0.9107 -2.4018 42 1 -0.0780 0.4003 -4.6478 43 1 1.5941 0.8297 -5.0818 44 1 1.8696 -1.3672 -6.1974 45 1 0.1976 -1.7972 -5.7639 46 1 2.2211 0.4662 -8.1298 47 1 0.5757 1.4207 -9.9390 48 1 -1.7592 -0.5845 -7.0773 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674706714.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:56 Heat of formation + Delta-G solvation = -37.036249 kcal Electronic energy + Delta-G solvation = -27970.451692 eV Core-core repulsion = 23867.373218 eV Total energy + Delta-G solvation = -4103.078474 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.92655 -41.09524 -40.18526 -38.56786 -36.07439 -35.74326 -35.31712 -33.28574 -32.39769 -31.14862 -30.68095 -30.18632 -28.03880 -25.92442 -25.89735 -24.07627 -22.23731 -21.85656 -21.55297 -21.21214 -21.09311 -19.92938 -18.81419 -18.10280 -17.47036 -17.36328 -16.87227 -16.68639 -16.42894 -16.18670 -15.80237 -15.44202 -15.36715 -15.17285 -14.85749 -14.78110 -14.54794 -14.27658 -14.21092 -13.99949 -13.88251 -13.53884 -13.47184 -13.39252 -13.11834 -12.90102 -12.67083 -12.60468 -12.42007 -12.34880 -12.30446 -12.12569 -11.61795 -11.50753 -11.09953 -10.91253 -10.56936 -10.34453 -10.16215 -10.01495 -9.42876 -9.35645 -8.47023 -5.95518 1.14764 1.37776 1.42092 1.54404 1.58793 1.70096 2.05196 2.21144 2.25814 2.31694 2.98601 3.20527 3.50244 3.56083 3.64515 3.73428 3.86369 3.92283 3.95987 4.15315 4.17579 4.30585 4.39115 4.43835 4.45541 4.46817 4.58594 4.59810 4.65284 4.71871 4.81616 4.83834 4.86369 4.95826 5.01441 5.19552 5.36614 5.39559 5.40773 5.42567 5.85173 5.89711 6.10471 6.28485 6.37585 6.51010 6.60171 7.12748 7.17202 7.21862 7.56278 8.11871 8.70187 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.042223 B = 0.001495 C = 0.001478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.981541 B =18723.874414 C =18934.309526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.082 3.918 3 H 0.071 0.929 4 N -0.680 5.680 5 C 0.068 3.932 6 C 0.436 3.564 7 O -0.625 6.625 8 N -0.572 5.572 9 C -0.335 4.335 10 H 0.078 0.922 11 C -0.010 4.010 12 N -0.919 5.919 13 Si 0.991 3.009 14 H -0.271 1.271 15 H -0.271 1.271 16 H -0.275 1.275 17 C 0.150 3.850 18 H 0.071 0.929 19 C -0.165 4.165 20 N -0.706 5.706 21 C 0.520 3.480 22 O -0.580 6.580 23 C -0.142 4.142 24 C 0.123 3.877 25 N -0.456 5.456 26 C -0.051 4.051 27 C -0.058 4.058 28 N -0.540 5.540 29 C 0.175 3.825 30 H 0.044 0.956 31 H 0.054 0.946 32 H 0.082 0.918 33 H 0.346 0.654 34 H 0.071 0.929 35 H 0.105 0.895 36 H 0.397 0.603 37 H 0.278 0.722 38 H 0.057 0.943 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.417 0.583 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.099 0.901 45 H 0.103 0.897 46 H 0.199 0.801 47 H 0.178 0.822 48 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.377 5.505 -26.794 27.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.028 4.028 3 H 0.089 0.911 4 N -0.316 5.316 5 C -0.065 4.065 6 C 0.223 3.777 7 O -0.511 6.511 8 N -0.209 5.209 9 C -0.465 4.465 10 H 0.096 0.904 11 C -0.210 4.210 12 N -0.559 5.559 13 Si 0.815 3.185 14 H -0.196 1.196 15 H -0.195 1.195 16 H -0.200 1.200 17 C 0.044 3.956 18 H 0.090 0.910 19 C -0.224 4.224 20 N -0.358 5.358 21 C 0.307 3.693 22 O -0.460 6.460 23 C -0.183 4.183 24 C 0.000 4.000 25 N -0.138 5.138 26 C -0.184 4.184 27 C -0.205 4.205 28 N -0.259 5.259 29 C -0.107 4.107 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.101 0.899 33 H 0.168 0.832 34 H 0.089 0.911 35 H 0.123 0.877 36 H 0.231 0.769 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.077 0.923 41 H 0.255 0.745 42 H 0.140 0.860 43 H 0.138 0.862 44 H 0.117 0.883 45 H 0.122 0.878 46 H 0.216 0.784 47 H 0.195 0.805 48 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -5.252 3.916 -26.858 27.645 hybrid contribution 1.635 0.620 1.322 2.192 sum -3.616 4.536 -25.536 26.187 Atomic orbital electron populations 1.21811 0.93478 1.01912 1.02331 1.21790 0.96856 0.96565 0.87574 0.91143 1.60165 1.35280 1.32613 1.03544 1.21569 1.02429 0.93622 0.88844 1.20923 0.83234 0.87993 0.85504 1.90500 1.56695 1.18310 1.85622 1.41916 1.58218 1.12604 1.08180 1.19662 1.42180 0.95989 0.88666 0.90432 1.25997 0.97188 0.96608 1.01249 1.69662 1.48479 1.09649 1.28155 0.84955 0.78505 0.78006 0.77041 1.19606 1.19529 1.19951 1.20786 0.93817 0.97055 0.83928 0.91040 1.22196 0.95169 1.02908 1.02112 1.45820 1.66685 1.14738 1.08591 1.20779 0.76727 0.86712 0.85049 1.90760 1.51766 1.17893 1.85605 1.21911 1.05843 0.99691 0.90832 1.21604 1.03020 0.94158 0.81198 1.45699 1.07558 1.40719 1.19829 1.23191 0.99654 1.02926 0.92663 1.22664 0.88561 1.06704 1.02563 1.70278 1.25366 1.16584 1.13683 1.25540 0.87880 1.02114 0.95162 0.93712 0.92666 0.89926 0.83248 0.91111 0.87710 0.76903 0.91293 0.92434 0.90827 0.92265 0.74546 0.86034 0.86211 0.88257 0.87842 0.78404 0.80476 0.75668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.26 71.98 0.67 -1.78 16 2 C 0.08 1.57 2.28 44.92 0.10 1.67 16 3 H 0.07 1.07 7.80 -2.39 -0.02 1.05 16 4 N -0.68 -19.78 5.93 -495.57 -2.94 -22.72 16 5 C 0.07 2.15 5.97 85.56 0.51 2.66 16 6 C 0.44 20.18 7.82 87.66 0.69 20.86 16 7 O -0.62 -34.25 15.78 -3.06 -0.05 -34.30 16 8 N -0.57 -28.67 5.29 -306.98 -1.62 -30.29 16 9 C -0.34 -18.84 9.68 84.04 0.81 -18.03 16 10 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 11 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 12 N -0.92 -48.63 13.05 21.66 0.28 -48.35 16 13 Si 0.99 42.45 29.55 68.60 2.03 44.47 16 14 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 15 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 16 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 17 C 0.15 2.74 2.29 44.99 0.10 2.84 16 18 H 0.07 1.78 7.58 -2.39 -0.02 1.76 16 19 C -0.17 -3.12 9.25 71.98 0.67 -2.45 16 20 N -0.71 -7.93 4.38 -442.53 -1.94 -9.87 16 21 C 0.52 6.82 7.79 87.66 0.68 7.51 16 22 O -0.58 -13.09 15.64 -3.03 -0.05 -13.14 16 23 C -0.14 -0.77 6.02 29.85 0.18 -0.60 16 24 C 0.12 0.98 5.44 86.38 0.47 1.45 16 25 N -0.46 -4.81 2.75 -529.08 -1.46 -6.27 16 26 C -0.05 -0.57 11.58 83.09 0.96 0.40 16 27 C -0.06 -0.90 11.87 83.52 0.99 0.09 16 28 N -0.54 -10.49 11.25 -200.31 -2.25 -12.74 16 29 C 0.18 2.35 12.56 180.26 2.26 4.62 16 30 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.05 1.05 7.45 -2.39 -0.02 1.03 16 32 H 0.08 0.94 7.45 -2.39 -0.02 0.92 16 33 H 0.35 10.79 5.87 -89.70 -0.53 10.27 16 34 H 0.07 1.89 8.05 -2.39 -0.02 1.87 16 35 H 0.10 2.98 7.44 -2.39 -0.02 2.96 16 36 H 0.40 18.73 7.90 -92.71 -0.73 17.99 16 37 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 38 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 39 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.06 1.31 6.21 -2.39 -0.01 1.30 16 41 H 0.42 2.04 8.39 -92.71 -0.78 1.27 16 42 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 43 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 44 H 0.10 0.88 8.10 -2.39 -0.02 0.86 16 45 H 0.10 0.88 8.10 -2.39 -0.02 0.87 16 46 H 0.20 0.98 8.06 -2.91 -0.02 0.96 16 47 H 0.18 2.07 8.06 -2.91 -0.02 2.04 16 48 H 0.23 1.57 8.06 -2.91 -0.02 1.55 16 Total: -1.00 -78.45 402.94 0.53 -77.92 By element: Atomic # 1 Polarization: 37.17 SS G_CDS: -1.04 Total: 36.14 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: 9.56 Total: 19.15 kcal Atomic # 7 Polarization: -120.31 SS G_CDS: -9.93 Total: -130.24 kcal Atomic # 8 Polarization: -47.35 SS G_CDS: -0.10 Total: -47.44 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal Total: -78.45 0.53 -77.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674706714.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.883 kcal (2) G-P(sol) polarization free energy of solvation -78.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds