Wall clock time and date at job start Tue Mar 31 2020 19:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47259 * 2 1 4 4 N 1.46496 * 109.47348 * 120.00271 * 2 1 3 5 5 C 1.34776 * 119.99846 * 275.00074 * 4 2 1 6 6 O 1.21282 * 119.99940 * 359.97438 * 5 4 2 7 7 C 1.50698 * 120.00035 * 180.02562 * 5 4 2 8 8 C 1.53006 * 109.47184 * 179.97438 * 7 5 4 9 9 N 1.46504 * 109.46883 * 179.97438 * 8 7 5 10 10 C 1.36874 * 126.39943 * 90.00176 * 9 8 7 11 11 C 1.34669 * 106.81918 * 179.97438 * 10 9 8 12 12 N 1.34123 * 108.02125 * 0.02562 * 11 10 9 13 13 C 1.30508 * 109.25485 * 359.72427 * 12 11 10 14 14 C 1.53004 * 109.46806 * 240.00324 * 2 1 3 15 15 H 1.09004 * 109.46996 * 299.99327 * 14 2 1 16 16 C 1.53003 * 109.46771 * 180.02562 * 14 2 1 17 17 N 1.46898 * 109.47253 * 59.99931 * 14 2 1 18 18 C 1.46903 * 110.99673 * 205.00291 * 17 14 2 19 19 C 1.50701 * 109.47054 * 179.97438 * 18 17 14 20 20 O 1.21294 * 119.99602 * 0.02562 * 19 18 17 21 21 N 1.34770 * 120.00204 * 179.97438 * 19 18 17 22 22 C 1.37099 * 120.00275 * 179.97438 * 21 19 18 23 23 H 1.08003 * 119.99797 * 0.02562 * 22 21 19 24 24 C 1.38953 * 120.00254 * 179.97438 * 22 21 19 25 25 N 1.31413 * 119.99955 * 0.02562 * 24 22 21 26 26 Si 1.86792 * 120.00049 * 179.97438 * 24 22 21 27 27 H 1.48508 * 109.47251 * 90.00526 * 26 24 22 28 28 H 1.48507 * 109.47317 * 210.00274 * 26 24 22 29 29 H 1.48496 * 109.47222 * 330.00295 * 26 24 22 30 30 H 1.09002 * 109.47259 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47231 * 300.00029 * 1 2 3 32 32 H 1.08996 * 109.47762 * 59.99911 * 1 2 3 33 33 H 0.96998 * 120.00192 * 95.00122 * 4 2 1 34 34 H 1.09001 * 109.47612 * 59.99945 * 7 5 4 35 35 H 1.09001 * 109.47122 * 299.99777 * 7 5 4 36 36 H 1.09001 * 109.47002 * 299.99404 * 8 7 5 37 37 H 1.08993 * 109.46955 * 59.99842 * 8 7 5 38 38 H 1.08001 * 126.59311 * 359.95764 * 10 9 8 39 39 H 1.08000 * 125.99191 * 179.97438 * 11 10 9 40 40 H 1.07997 * 125.65225 * 180.29380 * 13 12 11 41 41 H 1.08998 * 109.46697 * 299.98891 * 16 14 2 42 42 H 1.08987 * 109.47717 * 59.99513 * 16 14 2 43 43 H 1.09001 * 109.46804 * 180.02562 * 16 14 2 44 44 H 1.00897 * 111.00027 * 328.94873 * 17 14 2 45 45 H 1.09007 * 109.47159 * 299.99395 * 18 17 14 46 46 H 1.08997 * 109.47797 * 59.99597 * 18 17 14 47 47 H 0.97005 * 119.99911 * 359.97438 * 21 19 18 48 48 H 0.96992 * 120.00143 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1470 -0.0183 2.3571 6 8 1.8590 1.1586 2.4114 7 6 2.6500 -0.7286 3.5873 8 6 2.7019 0.2547 4.7585 9 7 3.1903 -0.4360 5.9546 10 6 4.4958 -0.5532 6.3488 11 6 4.4948 -1.2598 7.4952 12 7 3.2234 -1.5662 7.7927 13 6 2.4359 -1.0713 6.8772 14 6 2.0399 -0.7212 -1.2493 15 1 1.6766 -1.7489 -1.2493 16 6 3.5699 -0.7218 -1.2490 17 7 1.5502 -0.0287 -2.4487 18 6 1.4873 -0.9438 -3.5961 19 6 0.9812 -0.1997 -4.8050 20 8 0.7010 0.9773 -4.7191 21 7 0.8410 -0.8418 -5.9816 22 6 0.3801 -0.1650 -7.0812 23 1 0.1297 0.8829 -7.0046 24 6 0.2360 -0.8268 -8.2945 25 7 0.5410 -2.1016 -8.3878 26 14 -0.3927 0.0952 -9.7924 27 1 0.7550 0.6801 -10.5314 28 1 -1.1261 -0.8432 -10.6795 29 1 -1.3067 1.1816 -9.3574 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 2.2491 -1.6318 1.1525 34 1 3.6493 -1.1204 3.3978 35 1 1.9778 -1.5509 3.8324 36 1 3.3744 1.0767 4.5132 37 1 1.7028 0.6468 4.9482 38 1 5.3606 -0.1556 5.8384 39 1 5.3653 -1.5327 8.0733 40 1 1.3595 -1.1574 6.8591 41 1 3.9335 0.3058 -1.2489 42 1 3.9329 -1.2358 -0.3591 43 1 3.9332 -1.2352 -2.1393 44 1 0.6526 0.3993 -2.2780 45 1 2.4827 -1.3375 -3.8019 46 1 0.8110 -1.7674 -3.3675 47 1 1.0661 -1.7828 -6.0505 48 1 0.4401 -2.5637 -9.2346 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674706715.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:58 Heat of formation + Delta-G solvation = -37.063353 kcal Electronic energy + Delta-G solvation = -27970.641495 eV Core-core repulsion = 23867.561846 eV Total energy + Delta-G solvation = -4103.079649 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.92655 -41.09524 -40.18526 -38.56798 -36.07452 -35.74282 -35.31716 -33.28639 -32.39758 -31.14929 -30.68313 -30.18464 -28.03957 -25.92495 -25.89816 -24.07594 -22.23743 -21.85662 -21.55306 -21.21254 -21.09353 -19.92975 -18.81359 -18.11149 -17.46883 -17.35074 -16.85676 -16.70517 -16.42854 -16.19622 -15.80660 -15.47179 -15.36964 -15.08167 -14.92816 -14.75648 -14.54260 -14.26736 -14.21511 -14.02284 -13.88469 -13.53191 -13.46984 -13.39086 -13.11835 -12.90331 -12.67322 -12.60330 -12.41831 -12.34940 -12.30685 -12.12329 -11.61783 -11.50858 -11.10101 -10.91236 -10.56938 -10.34464 -10.16191 -10.01547 -9.42852 -9.35759 -8.47060 -5.95564 1.14786 1.37820 1.42090 1.54290 1.58737 1.70117 2.05172 2.21175 2.25773 2.31668 2.98498 3.20538 3.50163 3.56053 3.64471 3.73462 3.86355 3.92121 3.95979 4.15381 4.17641 4.30514 4.39157 4.44024 4.45290 4.46865 4.58808 4.59699 4.65403 4.71921 4.81625 4.83984 4.86101 4.95802 5.01280 5.19859 5.36581 5.39228 5.40748 5.42554 5.85110 5.89649 6.10415 6.28572 6.37464 6.50986 6.60096 7.12714 7.17108 7.21850 7.56245 8.11834 8.70170 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.042213 B = 0.001495 C = 0.001478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.138761 B =18723.037630 C =18935.995786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.150 3.850 3 H 0.071 0.929 4 N -0.706 5.706 5 C 0.520 3.480 6 O -0.581 6.581 7 C -0.142 4.142 8 C 0.123 3.877 9 N -0.456 5.456 10 C -0.051 4.051 11 C -0.058 4.058 12 N -0.540 5.540 13 C 0.175 3.825 14 C 0.082 3.918 15 H 0.071 0.929 16 C -0.137 4.137 17 N -0.680 5.680 18 C 0.068 3.932 19 C 0.436 3.564 20 O -0.625 6.625 21 N -0.572 5.572 22 C -0.335 4.335 23 H 0.078 0.922 24 C -0.010 4.010 25 N -0.919 5.919 26 Si 0.991 3.009 27 H -0.272 1.272 28 H -0.270 1.270 29 H -0.274 1.274 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.417 0.583 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.199 0.801 39 H 0.178 0.822 40 H 0.227 0.773 41 H 0.043 0.957 42 H 0.082 0.918 43 H 0.054 0.946 44 H 0.346 0.654 45 H 0.105 0.895 46 H 0.071 0.929 47 H 0.397 0.603 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.642 -4.923 26.206 27.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.044 3.956 3 H 0.089 0.911 4 N -0.358 5.358 5 C 0.307 3.693 6 O -0.460 6.460 7 C -0.183 4.183 8 C 0.000 4.000 9 N -0.138 5.138 10 C -0.184 4.184 11 C -0.205 4.205 12 N -0.259 5.259 13 C -0.107 4.107 14 C -0.028 4.028 15 H 0.089 0.911 16 C -0.195 4.195 17 N -0.316 5.316 18 C -0.065 4.065 19 C 0.223 3.777 20 O -0.511 6.511 21 N -0.209 5.209 22 C -0.465 4.465 23 H 0.096 0.904 24 C -0.210 4.210 25 N -0.559 5.559 26 Si 0.815 3.185 27 H -0.197 1.197 28 H -0.195 1.195 29 H -0.199 1.199 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.255 0.745 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.117 0.883 37 H 0.122 0.878 38 H 0.216 0.784 39 H 0.195 0.805 40 H 0.244 0.756 41 H 0.063 0.937 42 H 0.101 0.899 43 H 0.073 0.927 44 H 0.168 0.832 45 H 0.123 0.877 46 H 0.089 0.911 47 H 0.231 0.769 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.554 -3.581 26.520 27.551 hybrid contribution -0.631 -0.362 -1.583 1.742 sum 5.923 -3.943 24.937 25.932 Atomic orbital electron populations 1.22195 0.95153 1.02920 1.02130 1.20783 0.93836 0.97038 0.83928 0.91064 1.45817 1.66683 1.14740 1.08589 1.20780 0.76730 0.86709 0.85049 1.90761 1.51781 1.17885 1.85599 1.21912 1.05777 0.99726 0.90862 1.21606 1.02979 0.94111 0.81281 1.45698 1.06970 1.41054 1.20083 1.23193 0.87838 1.07214 1.00192 1.22660 0.95312 1.04216 0.98294 1.70275 1.03181 1.24668 1.27781 1.25543 1.00099 0.97699 0.87359 1.21790 0.96850 0.96573 0.87580 0.91140 1.21808 0.93490 1.01901 1.02324 1.60165 1.35283 1.32604 1.03547 1.21570 1.02428 0.93623 0.88844 1.20922 0.83234 0.87993 0.85509 1.90502 1.56700 1.18309 1.85627 1.41914 1.58201 1.12613 1.08180 1.19663 1.42178 0.95985 0.88670 0.90432 1.25996 0.97202 0.96595 1.01252 1.69660 1.48564 1.09620 1.28101 0.84955 0.78415 0.77853 0.77282 1.19742 1.19481 1.19864 0.90816 0.92400 0.92277 0.74545 0.86208 0.86035 0.88308 0.87791 0.78442 0.80486 0.75629 0.93733 0.89933 0.92657 0.83242 0.87705 0.91112 0.76903 0.91291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 9.25 71.98 0.67 -2.46 16 2 C 0.15 2.74 2.29 44.99 0.10 2.84 16 3 H 0.07 1.77 7.58 -2.39 -0.02 1.75 16 4 N -0.71 -7.93 4.38 -442.54 -1.94 -9.87 16 5 C 0.52 6.82 7.79 87.66 0.68 7.51 16 6 O -0.58 -13.09 15.64 -3.04 -0.05 -13.14 16 7 C -0.14 -0.77 6.02 29.85 0.18 -0.59 16 8 C 0.12 0.98 5.44 86.38 0.47 1.45 16 9 N -0.46 -4.81 2.75 -529.06 -1.46 -6.27 16 10 C -0.05 -0.57 11.58 83.09 0.96 0.39 16 11 C -0.06 -0.90 11.87 83.52 0.99 0.09 16 12 N -0.54 -10.45 11.25 -200.31 -2.25 -12.70 16 13 C 0.18 2.33 12.56 180.26 2.26 4.59 16 14 C 0.08 1.56 2.28 44.92 0.10 1.67 16 15 H 0.07 1.07 7.80 -2.38 -0.02 1.05 16 16 C -0.14 -2.44 9.26 71.98 0.67 -1.77 16 17 N -0.68 -19.77 5.93 -495.55 -2.94 -22.72 16 18 C 0.07 2.14 5.97 85.56 0.51 2.65 16 19 C 0.44 20.17 7.82 87.66 0.69 20.86 16 20 O -0.62 -34.26 15.78 -3.07 -0.05 -34.30 16 21 N -0.57 -28.66 5.29 -306.98 -1.62 -30.28 16 22 C -0.34 -18.84 9.68 84.04 0.81 -18.03 16 23 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 24 C -0.01 -0.55 5.50 84.93 0.47 -0.09 16 25 N -0.92 -48.62 13.05 21.66 0.28 -48.34 16 26 Si 0.99 42.44 29.55 68.60 2.03 44.47 16 27 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 28 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 29 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 30 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.06 1.31 6.21 -2.39 -0.01 1.30 16 33 H 0.42 2.04 8.39 -92.71 -0.78 1.27 16 34 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 35 H 0.12 0.28 8.14 -2.39 -0.02 0.26 16 36 H 0.10 0.90 8.10 -2.39 -0.02 0.88 16 37 H 0.10 0.86 8.10 -2.39 -0.02 0.84 16 38 H 0.20 1.04 8.06 -2.91 -0.02 1.02 16 39 H 0.18 2.08 8.06 -2.91 -0.02 2.06 16 40 H 0.23 1.50 8.06 -2.91 -0.02 1.48 16 41 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.08 0.94 7.44 -2.39 -0.02 0.92 16 43 H 0.05 1.04 7.45 -2.39 -0.02 1.03 16 44 H 0.35 10.80 5.86 -89.70 -0.53 10.27 16 45 H 0.10 2.98 7.44 -2.38 -0.02 2.96 16 46 H 0.07 1.89 8.05 -2.39 -0.02 1.87 16 47 H 0.40 18.72 7.90 -92.70 -0.73 17.99 16 48 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 Total: -1.00 -78.43 402.94 0.53 -77.90 By element: Atomic # 1 Polarization: 37.18 SS G_CDS: -1.04 Total: 36.15 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: 9.57 Total: 19.11 kcal Atomic # 7 Polarization: -120.25 SS G_CDS: -9.93 Total: -130.18 kcal Atomic # 8 Polarization: -47.35 SS G_CDS: -0.10 Total: -47.45 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -78.43 0.53 -77.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674706715.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.835 kcal (2) G-P(sol) polarization free energy of solvation -78.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds