Wall clock time and date at job start Tue Mar 31 2020 19:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46511 * 2 1 4 4 N 1.46897 * 109.46952 * 240.00728 * 2 1 3 5 5 C 1.46892 * 111.00347 * 84.99485 * 4 2 1 6 6 C 1.50701 * 109.47496 * 180.02562 * 5 4 2 7 7 O 1.21301 * 119.99542 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00605 * 179.97438 * 6 5 4 9 9 C 1.37098 * 120.00215 * 179.97438 * 8 6 5 10 10 H 1.07998 * 119.99919 * 0.02562 * 9 8 6 11 11 C 1.38952 * 119.99893 * 180.02562 * 9 8 6 12 12 N 1.31413 * 119.99702 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 119.99944 * 359.97438 * 11 9 8 14 14 H 1.48506 * 109.47207 * 89.99908 * 13 11 9 15 15 H 1.48503 * 109.47143 * 209.99970 * 13 11 9 16 16 H 1.48502 * 109.47377 * 329.99949 * 13 11 9 17 17 C 1.52992 * 109.47279 * 120.00465 * 2 1 3 18 18 H 1.08998 * 109.46862 * 185.00605 * 17 2 1 19 19 C 1.52997 * 109.47482 * 65.00040 * 17 2 1 20 20 N 1.46506 * 109.46999 * 304.99690 * 17 2 1 21 21 C 1.34777 * 120.00033 * 205.00067 * 20 17 2 22 22 O 1.21287 * 119.99681 * 0.02562 * 21 20 17 23 23 C 1.50696 * 120.00198 * 180.02562 * 21 20 17 24 24 C 1.52992 * 109.47385 * 180.02562 * 23 21 20 25 25 N 1.46506 * 109.47441 * 180.02562 * 24 23 21 26 26 C 1.36874 * 126.39595 * 90.00040 * 25 24 23 27 27 C 1.34670 * 106.81738 * 180.02562 * 26 25 24 28 28 N 1.34128 * 108.02080 * 359.97438 * 27 26 25 29 29 C 1.30501 * 109.25271 * 359.73071 * 28 27 26 30 30 H 1.09000 * 109.47104 * 299.99221 * 1 2 3 31 31 H 1.08993 * 109.47832 * 59.99599 * 1 2 3 32 32 H 1.09001 * 109.46924 * 179.97438 * 1 2 3 33 33 H 1.00898 * 111.00007 * 208.95694 * 4 2 1 34 34 H 1.09000 * 109.47597 * 299.99663 * 5 4 2 35 35 H 1.08997 * 109.47593 * 60.00182 * 5 4 2 36 36 H 0.97003 * 119.99393 * 0.02562 * 8 6 5 37 37 H 0.96999 * 119.99608 * 179.97438 * 12 11 9 38 38 H 1.09002 * 109.47153 * 59.99783 * 19 17 2 39 39 H 1.09001 * 109.46832 * 299.99974 * 19 17 2 40 40 H 1.09004 * 109.47261 * 179.97438 * 19 17 2 41 41 H 0.96992 * 120.00062 * 25.00521 * 20 17 2 42 42 H 1.08997 * 109.47364 * 300.00354 * 23 21 20 43 43 H 1.09001 * 109.46822 * 60.00123 * 23 21 20 44 44 H 1.09007 * 109.47184 * 300.00285 * 24 23 21 45 45 H 1.09001 * 109.47135 * 60.00198 * 24 23 21 46 46 H 1.08006 * 126.59583 * 359.96231 * 26 25 24 47 47 H 1.08003 * 125.99426 * 180.02562 * 27 26 25 48 48 H 1.08009 * 125.65147 * 180.29002 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0196 -0.6923 -1.1995 5 6 2.0823 0.2227 -2.3469 6 6 2.5871 -0.5215 -3.5561 7 8 2.8667 -1.6988 -3.4706 8 7 2.7270 0.1205 -4.7329 9 6 3.1868 -0.5565 -5.8328 10 1 3.4365 -1.6044 -5.7564 11 6 3.3314 0.1056 -7.0458 12 7 3.7726 -0.5432 -8.1000 13 14 2.8988 1.9180 -7.1780 14 1 4.0990 2.7371 -6.8713 15 1 2.4347 2.2169 -8.5566 16 1 1.8189 2.2410 -6.2112 17 6 2.0400 -0.7213 1.2491 18 1 3.1263 -0.6443 1.2950 19 6 1.6353 -2.1955 1.1878 20 7 1.4559 -0.1037 2.4423 21 6 2.0914 -0.1939 3.6275 22 8 3.1470 -0.7860 3.7060 23 6 1.4903 0.4408 4.8550 24 6 2.4046 0.1940 6.0565 25 7 1.8200 0.8105 7.2500 26 6 0.9560 0.2171 8.1303 27 6 0.6704 1.1344 9.0741 28 7 1.3421 2.2570 8.7784 29 6 2.0376 2.0684 7.6904 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8898 32 1 -0.3633 -1.0277 -0.0005 33 1 2.9172 -1.1204 -1.0289 34 1 1.0869 0.6164 -2.5525 35 1 2.7587 1.0464 -2.1183 36 1 2.5030 1.0619 -4.8013 37 1 3.8732 -0.0811 -8.9468 38 1 2.0699 -2.6550 0.3000 39 1 0.5490 -2.2724 1.1419 40 1 1.9991 -2.7095 2.0776 41 1 0.6119 0.3700 2.3794 42 1 1.3839 1.5136 4.6942 43 1 0.5106 0.0034 5.0475 44 1 2.5114 -0.8788 6.2175 45 1 3.3841 0.6317 5.8638 46 1 0.5756 -0.7923 8.0776 47 1 0.0158 0.9909 9.9211 48 1 2.6787 2.7985 7.2186 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674706716.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:02 Heat of formation + Delta-G solvation = -2.584790 kcal Electronic energy + Delta-G solvation = -28032.560150 eV Core-core repulsion = 23930.975604 eV Total energy + Delta-G solvation = -4101.584546 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.44697 -40.45418 -38.73038 -37.62986 -35.28435 -34.66219 -33.91080 -31.86277 -31.62890 -30.52742 -29.76211 -29.23898 -26.83488 -25.53279 -24.46810 -23.33892 -21.74216 -21.39324 -20.83969 -19.98017 -19.47124 -18.52891 -18.28111 -17.20584 -16.62952 -16.24010 -16.00908 -15.65745 -15.62568 -15.17034 -14.82267 -14.69584 -14.42691 -14.15273 -13.98235 -13.85940 -13.71254 -13.43333 -13.21946 -12.98648 -12.91172 -12.67625 -12.46618 -12.25162 -12.14835 -11.99879 -11.96615 -11.66357 -11.26858 -11.09087 -10.87085 -10.63631 -10.47873 -10.35823 -10.03662 -10.01252 -9.61504 -9.48985 -8.94194 -8.65659 -8.30558 -8.21525 -6.34851 -3.86510 1.61056 2.13522 2.17795 2.77915 2.81524 2.98620 3.02879 3.11709 3.68697 3.98867 4.02094 4.06689 4.07749 4.23052 4.32551 4.41914 4.54495 4.64219 4.70657 4.77738 4.83945 4.97608 5.04951 5.12577 5.17017 5.25565 5.29622 5.38501 5.40648 5.55001 5.60313 5.72364 5.75850 5.79369 5.82964 5.85024 6.02587 6.18681 6.28657 6.31928 6.73120 6.93453 7.03862 7.42339 7.53804 7.66927 7.73334 8.10301 8.55313 8.90914 9.38140 9.77724 10.78212 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.027901 B = 0.001599 C = 0.001561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.301813 B =17502.794336 C =17927.346424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.076 3.924 3 H 0.047 0.953 4 N -0.656 5.656 5 C 0.048 3.952 6 C 0.449 3.551 7 O -0.564 6.564 8 N -0.590 5.590 9 C -0.306 4.306 10 H 0.120 0.880 11 C 0.042 3.958 12 N -0.880 5.880 13 Si 0.880 3.120 14 H -0.271 1.271 15 H -0.276 1.276 16 H -0.270 1.270 17 C 0.141 3.859 18 H 0.088 0.912 19 C -0.158 4.158 20 N -0.720 5.720 21 C 0.518 3.482 22 O -0.538 6.538 23 C -0.158 4.158 24 C 0.121 3.879 25 N -0.460 5.460 26 C -0.056 4.056 27 C -0.031 4.031 28 N -0.497 5.497 29 C 0.181 3.819 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.353 0.647 34 H 0.088 0.912 35 H 0.045 0.955 36 H 0.370 0.630 37 H 0.274 0.726 38 H 0.083 0.917 39 H 0.060 0.940 40 H 0.053 0.947 41 H 0.401 0.599 42 H 0.102 0.898 43 H 0.102 0.898 44 H 0.102 0.898 45 H 0.104 0.896 46 H 0.174 0.826 47 H 0.169 0.831 48 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.376 6.278 28.635 30.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.034 4.034 3 H 0.065 0.935 4 N -0.290 5.290 5 C -0.085 4.085 6 C 0.235 3.765 7 O -0.446 6.446 8 N -0.229 5.229 9 C -0.435 4.435 10 H 0.138 0.862 11 C -0.161 4.161 12 N -0.520 5.520 13 Si 0.706 3.294 14 H -0.197 1.197 15 H -0.201 1.201 16 H -0.195 1.195 17 C 0.036 3.964 18 H 0.106 0.894 19 C -0.216 4.216 20 N -0.373 5.373 21 C 0.303 3.697 22 O -0.415 6.415 23 C -0.199 4.199 24 C -0.002 4.002 25 N -0.142 5.142 26 C -0.189 4.189 27 C -0.179 4.179 28 N -0.215 5.215 29 C -0.101 4.101 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.174 0.826 34 H 0.106 0.894 35 H 0.063 0.937 36 H 0.203 0.797 37 H 0.084 0.916 38 H 0.102 0.898 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.237 0.763 42 H 0.120 0.880 43 H 0.120 0.880 44 H 0.120 0.880 45 H 0.122 0.878 46 H 0.191 0.809 47 H 0.186 0.814 48 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -7.929 5.451 28.661 30.233 hybrid contribution -0.047 1.537 -0.746 1.710 sum -7.975 6.988 27.914 29.861 Atomic orbital electron populations 1.21892 0.94391 1.03059 1.00924 1.21721 0.96583 0.95879 0.89262 0.93459 1.60170 1.35127 1.31598 1.02146 1.21768 1.01397 0.93979 0.91328 1.19664 0.84647 0.88225 0.83988 1.90575 1.53820 1.15792 1.84375 1.42201 1.60036 1.11090 1.09575 1.19436 1.40171 0.98042 0.85834 0.86249 1.25040 0.97436 0.98400 0.95225 1.69622 1.44989 1.36549 1.00840 0.86674 0.78967 0.85136 0.78603 1.19664 1.20133 1.19512 1.21117 0.98740 0.93546 0.82982 0.89369 1.22128 1.02131 0.94440 1.02893 1.46171 1.25987 1.56913 1.08256 1.20274 0.84876 0.80099 0.84422 1.90765 1.22408 1.42735 1.85558 1.21998 1.01268 1.03596 0.92992 1.21600 0.96780 1.00681 0.81182 1.45641 1.35262 1.12557 1.20788 1.22798 1.00435 1.01163 0.94528 1.22339 1.04183 0.89992 1.01369 1.70316 1.10764 1.26774 1.13617 1.25071 1.03388 0.86520 0.95140 0.93251 0.92016 0.91029 0.82607 0.89409 0.93677 0.79715 0.91580 0.89832 0.92096 0.92816 0.76295 0.87984 0.87998 0.87982 0.87755 0.80892 0.81387 0.77935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 8.93 37.16 0.33 -0.88 16 2 C 0.08 0.74 2.66 -67.72 -0.18 0.56 16 3 H 0.05 0.44 7.80 -51.93 -0.40 0.04 16 4 N -0.66 -9.00 5.13 -108.01 -0.55 -9.55 16 5 C 0.05 0.73 5.96 -4.98 -0.03 0.70 16 6 C 0.45 9.80 7.82 -10.98 -0.09 9.71 16 7 O -0.56 -14.67 15.78 5.54 0.09 -14.58 16 8 N -0.59 -13.66 5.09 -10.96 -0.06 -13.72 16 9 C -0.31 -8.53 10.16 -14.93 -0.15 -8.68 16 10 H 0.12 3.81 7.39 -52.49 -0.39 3.43 16 11 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 12 N -0.88 -25.42 13.96 55.50 0.77 -24.65 16 13 Si 0.88 18.99 27.73 -169.99 -4.71 14.27 16 14 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 15 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 16 H -0.27 -5.27 6.52 56.52 0.37 -4.90 16 17 C 0.14 1.30 2.30 -67.93 -0.16 1.15 16 18 H 0.09 0.97 7.58 -51.93 -0.39 0.58 16 19 C -0.16 -1.60 9.02 37.16 0.33 -1.27 16 20 N -0.72 -4.85 4.99 -53.81 -0.27 -5.12 16 21 C 0.52 3.85 7.79 -10.99 -0.09 3.77 16 22 O -0.54 -6.13 15.65 5.55 0.09 -6.04 16 23 C -0.16 -0.65 6.02 -27.89 -0.17 -0.82 16 24 C 0.12 0.59 5.44 -4.04 -0.02 0.56 16 25 N -0.46 -2.81 2.75 -118.57 -0.33 -3.13 16 26 C -0.06 -0.36 11.58 -16.56 -0.19 -0.55 16 27 C -0.03 -0.25 11.87 -17.81 -0.21 -0.46 16 28 N -0.50 -4.89 11.25 -14.66 -0.16 -5.05 16 29 C 0.18 1.31 12.56 -90.38 -1.14 0.18 16 30 H 0.05 0.27 6.29 -51.93 -0.33 -0.05 16 31 H 0.06 0.56 7.45 -51.93 -0.39 0.18 16 32 H 0.07 0.67 6.57 -51.93 -0.34 0.33 16 33 H 0.35 5.17 7.62 -39.29 -0.30 4.87 16 34 H 0.09 1.20 7.44 -51.93 -0.39 0.81 16 35 H 0.05 0.60 8.06 -51.93 -0.42 0.18 16 36 H 0.37 7.49 5.76 -40.82 -0.24 7.25 16 37 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.08 0.99 7.17 -51.93 -0.37 0.62 16 39 H 0.06 0.57 6.57 -51.93 -0.34 0.23 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.40 1.77 6.58 -40.82 -0.27 1.50 16 42 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 43 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.10 0.53 8.10 -51.93 -0.42 0.11 16 45 H 0.10 0.51 8.10 -51.93 -0.42 0.09 16 46 H 0.17 0.63 8.06 -52.48 -0.42 0.21 16 47 H 0.17 0.98 8.06 -52.48 -0.42 0.56 16 48 H 0.20 0.84 8.06 -52.48 -0.42 0.42 16 LS Contribution 396.05 15.07 5.97 5.97 Total: -1.00 -36.06 396.05 -8.12 -44.18 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: -7.11 Total: 12.40 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -1.85 Total: 5.03 kcal Atomic # 7 Polarization: -60.62 SS G_CDS: -0.60 Total: -61.22 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: 0.17 Total: -20.63 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -4.71 Total: 14.27 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.06 -8.12 -44.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674706716.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.594 kcal (2) G-P(sol) polarization free energy of solvation -36.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds