Wall clock time and date at job start Tue Mar 31 2020 19:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46511 * 2 1 4 4 N 1.46897 * 109.46952 * 240.00728 * 2 1 3 5 5 C 1.46892 * 111.00347 * 84.99485 * 4 2 1 6 6 C 1.50701 * 109.47496 * 180.02562 * 5 4 2 7 7 O 1.21301 * 119.99542 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00605 * 179.97438 * 6 5 4 9 9 C 1.37098 * 120.00215 * 179.97438 * 8 6 5 10 10 H 1.07998 * 119.99919 * 0.02562 * 9 8 6 11 11 C 1.38952 * 119.99893 * 180.02562 * 9 8 6 12 12 N 1.31413 * 119.99702 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 119.99944 * 359.97438 * 11 9 8 14 14 H 1.48506 * 109.47207 * 89.99908 * 13 11 9 15 15 H 1.48503 * 109.47143 * 209.99970 * 13 11 9 16 16 H 1.48502 * 109.47377 * 329.99949 * 13 11 9 17 17 C 1.52992 * 109.47279 * 120.00465 * 2 1 3 18 18 H 1.08998 * 109.46862 * 185.00605 * 17 2 1 19 19 C 1.52997 * 109.47482 * 65.00040 * 17 2 1 20 20 N 1.46506 * 109.46999 * 304.99690 * 17 2 1 21 21 C 1.34777 * 120.00033 * 205.00067 * 20 17 2 22 22 O 1.21287 * 119.99681 * 0.02562 * 21 20 17 23 23 C 1.50696 * 120.00198 * 180.02562 * 21 20 17 24 24 C 1.52992 * 109.47385 * 180.02562 * 23 21 20 25 25 N 1.46506 * 109.47441 * 180.02562 * 24 23 21 26 26 C 1.36874 * 126.39595 * 90.00040 * 25 24 23 27 27 C 1.34670 * 106.81738 * 180.02562 * 26 25 24 28 28 N 1.34128 * 108.02080 * 359.97438 * 27 26 25 29 29 C 1.30501 * 109.25271 * 359.73071 * 28 27 26 30 30 H 1.09000 * 109.47104 * 299.99221 * 1 2 3 31 31 H 1.08993 * 109.47832 * 59.99599 * 1 2 3 32 32 H 1.09001 * 109.46924 * 179.97438 * 1 2 3 33 33 H 1.00898 * 111.00007 * 208.95694 * 4 2 1 34 34 H 1.09000 * 109.47597 * 299.99663 * 5 4 2 35 35 H 1.08997 * 109.47593 * 60.00182 * 5 4 2 36 36 H 0.97003 * 119.99393 * 0.02562 * 8 6 5 37 37 H 0.96999 * 119.99608 * 179.97438 * 12 11 9 38 38 H 1.09002 * 109.47153 * 59.99783 * 19 17 2 39 39 H 1.09001 * 109.46832 * 299.99974 * 19 17 2 40 40 H 1.09004 * 109.47261 * 179.97438 * 19 17 2 41 41 H 0.96992 * 120.00062 * 25.00521 * 20 17 2 42 42 H 1.08997 * 109.47364 * 300.00354 * 23 21 20 43 43 H 1.09001 * 109.46822 * 60.00123 * 23 21 20 44 44 H 1.09007 * 109.47184 * 300.00285 * 24 23 21 45 45 H 1.09001 * 109.47135 * 60.00198 * 24 23 21 46 46 H 1.08006 * 126.59583 * 359.96231 * 26 25 24 47 47 H 1.08003 * 125.99426 * 180.02562 * 27 26 25 48 48 H 1.08009 * 125.65147 * 180.29002 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0196 -0.6923 -1.1995 5 6 2.0823 0.2227 -2.3469 6 6 2.5871 -0.5215 -3.5561 7 8 2.8667 -1.6988 -3.4706 8 7 2.7270 0.1205 -4.7329 9 6 3.1868 -0.5565 -5.8328 10 1 3.4365 -1.6044 -5.7564 11 6 3.3314 0.1056 -7.0458 12 7 3.7726 -0.5432 -8.1000 13 14 2.8988 1.9180 -7.1780 14 1 4.0990 2.7371 -6.8713 15 1 2.4347 2.2169 -8.5566 16 1 1.8189 2.2410 -6.2112 17 6 2.0400 -0.7213 1.2491 18 1 3.1263 -0.6443 1.2950 19 6 1.6353 -2.1955 1.1878 20 7 1.4559 -0.1037 2.4423 21 6 2.0914 -0.1939 3.6275 22 8 3.1470 -0.7860 3.7060 23 6 1.4903 0.4408 4.8550 24 6 2.4046 0.1940 6.0565 25 7 1.8200 0.8105 7.2500 26 6 0.9560 0.2171 8.1303 27 6 0.6704 1.1344 9.0741 28 7 1.3421 2.2570 8.7784 29 6 2.0376 2.0684 7.6904 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8898 32 1 -0.3633 -1.0277 -0.0005 33 1 2.9172 -1.1204 -1.0289 34 1 1.0869 0.6164 -2.5525 35 1 2.7587 1.0464 -2.1183 36 1 2.5030 1.0619 -4.8013 37 1 3.8732 -0.0811 -8.9468 38 1 2.0699 -2.6550 0.3000 39 1 0.5490 -2.2724 1.1419 40 1 1.9991 -2.7095 2.0776 41 1 0.6119 0.3700 2.3794 42 1 1.3839 1.5136 4.6942 43 1 0.5106 0.0034 5.0475 44 1 2.5114 -0.8788 6.2175 45 1 3.3841 0.6317 5.8638 46 1 0.5756 -0.7923 8.0776 47 1 0.0158 0.9909 9.9211 48 1 2.6787 2.7985 7.2186 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674706716.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:01 Heat of formation + Delta-G solvation = -30.281469 kcal Electronic energy + Delta-G solvation = -28033.761168 eV Core-core repulsion = 23930.975604 eV Total energy + Delta-G solvation = -4102.785564 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.93022 -41.12366 -40.30836 -38.64281 -36.11423 -35.75298 -35.34269 -33.75026 -32.52954 -31.17436 -30.28011 -29.95861 -28.27116 -26.18733 -25.80336 -24.34830 -22.24057 -21.92377 -21.38440 -21.30362 -20.73999 -20.31694 -18.84653 -18.05667 -17.43546 -17.32707 -16.81776 -16.78357 -16.61462 -16.23926 -15.88391 -15.52814 -15.23645 -15.10125 -14.97069 -14.76283 -14.54152 -14.38054 -14.35259 -14.05156 -13.90509 -13.57307 -13.48364 -13.39982 -13.10609 -13.05962 -12.86334 -12.51839 -12.41406 -12.34926 -11.97814 -11.92351 -11.66252 -11.51035 -11.10376 -10.91568 -10.57365 -10.43998 -10.24825 -10.14960 -9.43201 -9.37231 -8.41186 -6.02289 1.14442 1.30172 1.35755 1.44889 1.57306 1.69826 1.96255 2.22180 2.23477 2.25970 2.78669 3.15482 3.39159 3.59385 3.65211 3.72865 3.85599 3.91911 3.94547 4.13812 4.14838 4.22468 4.38891 4.42155 4.44819 4.48377 4.55936 4.64652 4.66208 4.78360 4.83263 4.83675 4.84942 4.99521 5.04874 5.29750 5.36168 5.46569 5.51298 5.54150 5.84824 5.90365 6.03853 6.28172 6.32228 6.49690 6.59763 6.88399 7.16871 7.20323 7.40020 7.96925 8.76504 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.027901 B = 0.001599 C = 0.001561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.301813 B =17502.794336 C =17927.346424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.082 3.918 3 H 0.064 0.936 4 N -0.674 5.674 5 C 0.063 3.937 6 C 0.448 3.552 7 O -0.614 6.614 8 N -0.591 5.591 9 C -0.330 4.330 10 H 0.054 0.946 11 C -0.015 4.015 12 N -0.935 5.935 13 Si 0.965 3.035 14 H -0.258 1.258 15 H -0.276 1.276 16 H -0.229 1.229 17 C 0.149 3.851 18 H 0.068 0.932 19 C -0.151 4.151 20 N -0.708 5.708 21 C 0.519 3.481 22 O -0.581 6.581 23 C -0.143 4.143 24 C 0.123 3.877 25 N -0.456 5.456 26 C -0.051 4.051 27 C -0.058 4.058 28 N -0.540 5.540 29 C 0.175 3.825 30 H 0.083 0.917 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.343 0.657 34 H 0.116 0.884 35 H 0.077 0.923 36 H 0.390 0.610 37 H 0.279 0.721 38 H 0.059 0.941 39 H 0.070 0.930 40 H 0.044 0.956 41 H 0.416 0.584 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.098 0.902 45 H 0.104 0.896 46 H 0.199 0.801 47 H 0.178 0.822 48 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.467 9.727 30.217 33.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.028 4.028 3 H 0.082 0.918 4 N -0.308 5.308 5 C -0.069 4.069 6 C 0.236 3.764 7 O -0.499 6.499 8 N -0.233 5.233 9 C -0.459 4.459 10 H 0.072 0.928 11 C -0.214 4.214 12 N -0.576 5.576 13 Si 0.785 3.215 14 H -0.182 1.182 15 H -0.201 1.201 16 H -0.152 1.152 17 C 0.043 3.957 18 H 0.086 0.914 19 C -0.210 4.210 20 N -0.362 5.362 21 C 0.306 3.694 22 O -0.461 6.461 23 C -0.183 4.183 24 C 0.000 4.000 25 N -0.138 5.138 26 C -0.184 4.184 27 C -0.205 4.205 28 N -0.259 5.259 29 C -0.107 4.107 30 H 0.102 0.898 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.163 0.837 34 H 0.134 0.866 35 H 0.095 0.905 36 H 0.225 0.775 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.255 0.745 42 H 0.140 0.860 43 H 0.138 0.862 44 H 0.117 0.883 45 H 0.122 0.878 46 H 0.216 0.784 47 H 0.195 0.805 48 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -10.070 8.923 30.276 33.131 hybrid contribution 0.644 0.291 -1.177 1.373 sum -9.426 9.214 29.100 31.946 Atomic orbital electron populations 1.21913 0.92870 1.02817 1.02559 1.21774 0.97523 0.96089 0.87406 0.91772 1.60196 1.34789 1.32323 1.03466 1.21680 1.03092 0.93699 0.88435 1.21014 0.82257 0.87942 0.85223 1.90556 1.55295 1.18586 1.85415 1.42023 1.60571 1.11838 1.08818 1.19011 1.42336 0.96100 0.88474 0.92763 1.26128 0.96377 1.05042 0.93819 1.69811 1.46310 1.39615 1.01821 0.85360 0.80216 0.76430 0.79471 1.18231 1.20132 1.15207 1.20825 0.97750 0.93033 0.84050 0.91392 1.22036 1.02499 0.95124 1.01294 1.45993 1.26391 1.56498 1.07291 1.20814 0.84176 0.79257 0.85196 1.90761 1.24478 1.44699 1.86183 1.21913 1.01303 1.04509 0.90605 1.21603 0.96967 1.00373 0.81036 1.45697 1.34948 1.12257 1.20908 1.23193 0.99646 1.01831 0.93770 1.22665 1.05044 0.90221 1.02559 1.70276 1.12257 1.28163 1.15173 1.25545 1.03153 0.87311 0.94706 0.89811 0.92230 0.92241 0.83715 0.86594 0.90502 0.77451 0.91176 0.92183 0.91066 0.93692 0.74484 0.85997 0.86224 0.88323 0.87802 0.78425 0.80481 0.75638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.93 71.98 0.64 -1.21 16 2 C 0.08 1.35 2.66 44.91 0.12 1.47 16 3 H 0.06 0.90 7.80 -2.39 -0.02 0.89 16 4 N -0.67 -17.48 5.13 -495.62 -2.54 -20.02 16 5 C 0.06 1.75 5.96 85.56 0.51 2.26 16 6 C 0.45 19.45 7.82 87.66 0.69 20.13 16 7 O -0.61 -33.30 15.78 -3.10 -0.05 -33.35 16 8 N -0.59 -27.07 5.09 -306.97 -1.56 -28.63 16 9 C -0.33 -19.12 10.16 84.04 0.85 -18.26 16 10 H 0.05 3.77 7.39 -2.91 -0.02 3.74 16 11 C -0.02 -0.83 5.50 84.93 0.47 -0.36 16 12 N -0.93 -56.01 13.96 21.66 0.30 -55.71 16 13 Si 0.97 37.89 27.73 68.60 1.90 39.79 16 14 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 15 H -0.28 -10.83 7.11 99.48 0.71 -10.12 16 16 H -0.23 -7.42 6.52 99.48 0.65 -6.77 16 17 C 0.15 2.51 2.30 44.99 0.10 2.62 16 18 H 0.07 1.46 7.58 -2.39 -0.02 1.45 16 19 C -0.15 -3.00 9.02 71.98 0.65 -2.35 16 20 N -0.71 -7.40 4.99 -442.54 -2.21 -9.61 16 21 C 0.52 6.46 7.79 87.66 0.68 7.15 16 22 O -0.58 -12.69 15.65 -3.05 -0.05 -12.74 16 23 C -0.14 -0.70 6.02 29.84 0.18 -0.52 16 24 C 0.12 0.92 5.44 86.38 0.47 1.39 16 25 N -0.46 -4.58 2.75 -529.05 -1.46 -6.04 16 26 C -0.05 -0.55 11.58 83.09 0.96 0.42 16 27 C -0.06 -0.87 11.87 83.52 0.99 0.12 16 28 N -0.54 -10.19 11.25 -200.30 -2.25 -12.45 16 29 C 0.18 2.25 12.56 180.26 2.26 4.51 16 30 H 0.08 0.50 6.29 -2.39 -0.02 0.48 16 31 H 0.06 0.83 7.45 -2.39 -0.02 0.81 16 32 H 0.06 0.94 6.57 -2.39 -0.02 0.92 16 33 H 0.34 10.07 7.62 -89.70 -0.68 9.39 16 34 H 0.12 2.64 7.44 -2.39 -0.02 2.62 16 35 H 0.08 1.70 8.06 -2.39 -0.02 1.69 16 36 H 0.39 14.59 5.76 -92.71 -0.53 14.05 16 37 H 0.28 15.25 8.31 -92.71 -0.77 14.48 16 38 H 0.06 1.48 7.17 -2.39 -0.02 1.46 16 39 H 0.07 1.24 6.57 -2.39 -0.02 1.22 16 40 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 41 H 0.42 1.82 6.58 -92.71 -0.61 1.21 16 42 H 0.12 0.20 8.14 -2.39 -0.02 0.18 16 43 H 0.12 0.24 8.14 -2.39 -0.02 0.23 16 44 H 0.10 0.84 8.10 -2.38 -0.02 0.82 16 45 H 0.10 0.82 8.10 -2.39 -0.02 0.80 16 46 H 0.20 0.92 8.06 -2.91 -0.02 0.90 16 47 H 0.18 1.99 8.06 -2.91 -0.02 1.97 16 48 H 0.23 1.42 8.06 -2.91 -0.02 1.40 16 Total: -1.00 -86.32 396.05 0.79 -85.53 By element: Atomic # 1 Polarization: 36.74 SS G_CDS: -0.88 Total: 35.86 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: 9.58 Total: 17.36 kcal Atomic # 7 Polarization: -122.73 SS G_CDS: -9.72 Total: -132.46 kcal Atomic # 8 Polarization: -45.99 SS G_CDS: -0.10 Total: -46.09 kcal Atomic # 14 Polarization: 37.89 SS G_CDS: 1.90 Total: 39.79 kcal Total: -86.32 0.79 -85.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674706716.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.247 kcal (2) G-P(sol) polarization free energy of solvation -86.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds