Wall clock time and date at job start Tue Mar 31 2020 19:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46996 * 2 1 4 4 N 1.46904 * 109.47044 * 119.99398 * 2 1 3 5 5 C 1.46899 * 111.00232 * 274.99916 * 4 2 1 6 6 C 1.50704 * 109.47000 * 180.02562 * 5 4 2 7 7 O 1.21286 * 120.00216 * 0.02562 * 6 5 4 8 8 N 1.34783 * 119.99478 * 180.02562 * 6 5 4 9 9 C 1.37103 * 119.99655 * 179.97438 * 8 6 5 10 10 H 1.08004 * 119.99694 * 0.02562 * 9 8 6 11 11 C 1.38939 * 119.99977 * 179.97438 * 9 8 6 12 12 N 1.31413 * 120.00328 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00120 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47322 * 89.99757 * 13 11 9 15 15 H 1.48503 * 109.47555 * 210.00339 * 13 11 9 16 16 H 1.48501 * 109.47120 * 330.00046 * 13 11 9 17 17 C 1.52999 * 109.47039 * 239.99649 * 2 1 3 18 18 H 1.09003 * 109.46775 * 175.00365 * 17 2 1 19 19 C 1.52998 * 109.46703 * 294.99794 * 17 2 1 20 20 N 1.46491 * 109.47054 * 54.99997 * 17 2 1 21 21 C 1.34774 * 119.99975 * 154.99870 * 20 17 2 22 22 O 1.21286 * 120.00140 * 0.02562 * 21 20 17 23 23 C 1.50702 * 120.00236 * 179.97438 * 21 20 17 24 24 C 1.52996 * 109.47197 * 180.02562 * 23 21 20 25 25 N 1.46501 * 109.47323 * 180.02562 * 24 23 21 26 26 C 1.36890 * 126.39537 * 270.03108 * 25 24 23 27 27 C 1.34669 * 106.81617 * 179.97438 * 26 25 24 28 28 N 1.34134 * 108.02026 * 0.02562 * 27 26 25 29 29 C 1.30493 * 109.25480 * 0.02562 * 28 27 26 30 30 H 1.08994 * 109.47057 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46972 * 300.00419 * 1 2 3 32 32 H 1.08994 * 109.47218 * 60.00030 * 1 2 3 33 33 H 1.00901 * 110.99803 * 151.04771 * 4 2 1 34 34 H 1.08997 * 109.47261 * 300.00001 * 5 4 2 35 35 H 1.08998 * 109.46943 * 59.99948 * 5 4 2 36 36 H 0.96999 * 120.00097 * 0.02562 * 8 6 5 37 37 H 0.97002 * 120.00435 * 179.97438 * 12 11 9 38 38 H 1.09008 * 109.46789 * 179.97438 * 19 17 2 39 39 H 1.08996 * 109.47594 * 299.99577 * 19 17 2 40 40 H 1.09000 * 109.47295 * 60.00283 * 19 17 2 41 41 H 0.97000 * 120.00217 * 335.00292 * 20 17 2 42 42 H 1.09006 * 109.47101 * 60.00122 * 23 21 20 43 43 H 1.09002 * 109.47241 * 300.00434 * 23 21 20 44 44 H 1.09002 * 109.47343 * 60.00448 * 24 23 21 45 45 H 1.08998 * 109.47519 * 299.99826 * 24 23 21 46 46 H 1.07996 * 126.59258 * 359.97438 * 26 25 24 47 47 H 1.08002 * 125.99042 * 180.26007 * 27 26 25 48 48 H 1.08006 * 125.64571 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0825 0.2228 2.3469 6 6 2.5885 -0.5213 3.5558 7 8 2.8697 -1.6980 3.4699 8 7 2.7287 0.1210 4.7324 9 6 3.1886 -0.5560 5.8324 10 1 3.4389 -1.6039 5.7558 11 6 3.3336 0.1061 7.0452 12 7 3.0294 1.3812 7.1382 13 14 3.9608 -0.8161 8.5437 14 1 5.4418 -0.7220 8.5988 15 1 3.3806 -0.2170 9.7724 16 1 3.5586 -2.2426 8.4512 17 6 2.0400 -0.7213 -1.2492 18 1 3.1263 -0.6444 -1.2950 19 6 1.6352 -2.1955 -1.1877 20 7 1.4558 -0.1038 -2.4423 21 6 2.0912 -0.1940 -3.6274 22 8 3.1464 -0.7868 -3.7063 23 6 1.4901 0.4407 -4.8549 24 6 2.4038 0.1928 -6.0568 25 7 1.8197 0.8103 -7.2500 26 6 0.9541 0.2184 -8.1299 27 6 0.6697 1.1361 -9.0736 28 7 1.3437 2.2576 -8.7782 29 6 2.0353 2.0695 -7.6878 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 2.9173 -1.1204 1.0289 34 1 2.7589 1.0463 2.1182 35 1 1.0871 0.6165 2.5525 36 1 2.5035 1.0620 4.8012 37 1 3.1303 1.8434 7.9851 38 1 1.9982 -2.7094 -2.0779 39 1 2.0699 -2.6550 -0.3000 40 1 0.5489 -2.2724 -1.1418 41 1 0.6118 0.3700 -2.3793 42 1 1.3837 1.5136 -4.6942 43 1 0.5104 0.0034 -5.0474 44 1 2.5097 -0.8801 -6.2175 45 1 3.3836 0.6299 -5.8646 46 1 0.5727 -0.7906 -8.0774 47 1 0.0112 0.9952 -9.9179 48 1 2.6739 2.8001 -7.2135 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674706717.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:04 Heat of formation + Delta-G solvation = -9.933510 kcal Electronic energy + Delta-G solvation = -27970.252309 eV Core-core repulsion = 23868.349098 eV Total energy + Delta-G solvation = -4101.903211 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.42369 -40.41096 -38.57509 -37.51351 -35.25331 -34.59210 -33.84861 -31.76039 -31.23596 -30.45119 -29.73374 -29.18120 -26.64541 -25.49809 -24.52137 -23.40893 -21.71979 -21.36740 -20.80131 -19.91480 -19.36578 -18.31306 -17.96033 -17.18838 -16.59051 -16.19788 -15.98413 -15.59619 -15.56221 -15.04923 -14.73032 -14.48362 -14.37912 -14.15184 -13.94757 -13.87339 -13.75461 -13.46122 -13.23050 -12.94959 -12.88034 -12.58202 -12.30620 -12.13052 -11.96933 -11.87978 -11.65681 -11.49349 -11.14868 -10.99707 -10.80671 -10.44532 -10.41900 -10.33673 -10.25062 -10.00774 -9.54422 -9.44513 -8.92071 -8.52499 -8.18600 -7.99995 -6.45141 -3.86132 1.63283 2.17214 2.20700 2.80429 2.85251 3.15476 3.24513 3.30383 3.86234 4.03350 4.05255 4.10400 4.24054 4.29054 4.34854 4.47417 4.57705 4.73405 4.74813 4.81700 5.04176 5.07082 5.08253 5.15351 5.21418 5.31068 5.31889 5.46296 5.49092 5.63232 5.70353 5.82280 5.85227 5.85698 5.89342 6.05485 6.21205 6.24156 6.33426 6.34073 6.75397 7.02471 7.12227 7.51838 7.52230 7.69116 7.77230 8.02468 8.57160 9.14326 9.50198 10.01319 10.72483 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.034066 B = 0.001513 C = 0.001497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.729322 B =18496.310386 C =18701.584233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.076 3.924 3 H 0.047 0.953 4 N -0.656 5.656 5 C 0.051 3.949 6 C 0.440 3.560 7 O -0.583 6.583 8 N -0.563 5.563 9 C -0.300 4.300 10 H 0.103 0.897 11 C 0.023 3.977 12 N -0.902 5.902 13 Si 0.930 3.070 14 H -0.278 1.278 15 H -0.283 1.283 16 H -0.269 1.269 17 C 0.141 3.859 18 H 0.088 0.912 19 C -0.157 4.157 20 N -0.720 5.720 21 C 0.518 3.482 22 O -0.538 6.538 23 C -0.158 4.158 24 C 0.121 3.879 25 N -0.460 5.460 26 C -0.057 4.057 27 C -0.031 4.031 28 N -0.497 5.497 29 C 0.181 3.819 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.048 0.952 33 H 0.351 0.649 34 H 0.044 0.956 35 H 0.087 0.913 36 H 0.392 0.608 37 H 0.272 0.728 38 H 0.052 0.948 39 H 0.083 0.917 40 H 0.060 0.940 41 H 0.401 0.599 42 H 0.102 0.898 43 H 0.102 0.898 44 H 0.102 0.898 45 H 0.104 0.896 46 H 0.174 0.826 47 H 0.169 0.831 48 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.648 1.931 -26.031 26.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.035 4.035 3 H 0.065 0.935 4 N -0.290 5.290 5 C -0.082 4.082 6 C 0.226 3.774 7 O -0.467 6.467 8 N -0.200 5.200 9 C -0.430 4.430 10 H 0.121 0.879 11 C -0.179 4.179 12 N -0.543 5.543 13 Si 0.757 3.243 14 H -0.204 1.204 15 H -0.209 1.209 16 H -0.194 1.194 17 C 0.036 3.964 18 H 0.106 0.894 19 C -0.215 4.215 20 N -0.373 5.373 21 C 0.303 3.697 22 O -0.415 6.415 23 C -0.199 4.199 24 C -0.002 4.002 25 N -0.142 5.142 26 C -0.189 4.189 27 C -0.179 4.179 28 N -0.215 5.215 29 C -0.101 4.101 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.172 0.828 34 H 0.062 0.938 35 H 0.105 0.895 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.101 0.899 40 H 0.079 0.921 41 H 0.237 0.763 42 H 0.120 0.880 43 H 0.120 0.880 44 H 0.120 0.880 45 H 0.122 0.878 46 H 0.191 0.809 47 H 0.186 0.814 48 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -6.254 1.243 -26.123 26.890 hybrid contribution 0.427 0.325 1.253 1.364 sum -5.827 1.568 -24.869 25.591 Atomic orbital electron populations 1.21887 0.94443 1.02957 1.00936 1.21721 0.96556 0.95905 0.89281 0.93474 1.60193 1.34968 1.31707 1.02154 1.21735 1.01346 0.93865 0.91244 1.19766 0.85063 0.88201 0.84412 1.90527 1.55313 1.16110 1.84717 1.41861 1.57678 1.12442 1.07972 1.19709 1.39990 0.96480 0.86797 0.87889 1.25258 0.97591 0.95777 0.99249 1.69609 1.48564 1.08880 1.27229 0.85855 0.78783 0.79526 0.80116 1.20413 1.20909 1.19385 1.21121 0.98714 0.93519 0.83031 0.89411 1.22122 1.02114 0.94495 1.02810 1.46172 1.25982 1.56864 1.08257 1.20271 0.84871 0.80107 0.84429 1.90761 1.22454 1.42761 1.85570 1.22003 1.01255 1.03620 0.92992 1.21600 0.96803 1.00647 0.81182 1.45648 1.35256 1.12499 1.20846 1.22797 1.00344 1.01203 0.94592 1.22337 1.04102 0.90052 1.01394 1.70315 1.10838 1.26817 1.13522 1.25070 1.03449 0.86479 0.95089 0.91124 0.91953 0.93313 0.82800 0.93815 0.89528 0.77481 0.91857 0.92881 0.89859 0.92120 0.76282 0.87963 0.88011 0.87986 0.87763 0.80905 0.81397 0.77926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 8.93 37.16 0.33 -0.98 16 2 C 0.08 0.80 2.66 -67.71 -0.18 0.62 16 3 H 0.05 0.49 7.80 -51.93 -0.40 0.08 16 4 N -0.66 -9.54 5.14 -107.99 -0.55 -10.09 16 5 C 0.05 0.84 5.97 -4.97 -0.03 0.81 16 6 C 0.44 10.05 7.82 -10.98 -0.09 9.97 16 7 O -0.58 -15.39 15.78 5.55 0.09 -15.30 16 8 N -0.56 -13.95 5.29 -10.96 -0.06 -14.01 16 9 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 10 H 0.10 2.98 7.16 -52.48 -0.38 2.60 16 11 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 12 N -0.90 -24.18 13.05 55.49 0.72 -23.45 16 13 Si 0.93 20.81 29.55 -169.99 -5.02 15.79 16 14 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 15 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 16 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 17 C 0.14 1.38 2.30 -67.94 -0.16 1.23 16 18 H 0.09 1.02 7.58 -51.93 -0.39 0.63 16 19 C -0.16 -1.66 9.02 37.16 0.33 -1.33 16 20 N -0.72 -5.20 4.99 -53.81 -0.27 -5.47 16 21 C 0.52 4.06 7.79 -10.99 -0.09 3.97 16 22 O -0.54 -6.33 15.65 5.55 0.09 -6.24 16 23 C -0.16 -0.70 6.02 -27.88 -0.17 -0.87 16 24 C 0.12 0.62 5.44 -4.04 -0.02 0.60 16 25 N -0.46 -2.92 2.75 -118.58 -0.33 -3.24 16 26 C -0.06 -0.37 11.58 -16.56 -0.19 -0.56 16 27 C -0.03 -0.25 11.87 -17.81 -0.21 -0.47 16 28 N -0.50 -5.00 11.25 -14.66 -0.16 -5.16 16 29 C 0.18 1.36 12.56 -90.38 -1.14 0.22 16 30 H 0.07 0.70 6.57 -51.93 -0.34 0.36 16 31 H 0.06 0.63 7.45 -51.92 -0.39 0.24 16 32 H 0.05 0.30 6.29 -51.93 -0.33 -0.03 16 33 H 0.35 5.43 7.61 -39.29 -0.30 5.13 16 34 H 0.04 0.66 8.05 -51.93 -0.42 0.24 16 35 H 0.09 1.31 7.44 -51.93 -0.39 0.93 16 36 H 0.39 9.27 7.90 -40.82 -0.32 8.95 16 37 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 38 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 39 H 0.08 1.02 7.17 -51.93 -0.37 0.65 16 40 H 0.06 0.59 6.57 -51.93 -0.34 0.25 16 41 H 0.40 1.98 6.58 -40.82 -0.27 1.71 16 42 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.10 0.55 8.10 -51.93 -0.42 0.13 16 45 H 0.10 0.54 8.10 -51.93 -0.42 0.12 16 46 H 0.17 0.67 8.06 -52.49 -0.42 0.24 16 47 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 48 H 0.20 0.90 8.06 -52.48 -0.42 0.47 16 LS Contribution 399.17 15.07 6.02 6.02 Total: -1.00 -34.72 399.17 -8.47 -43.19 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: -7.15 Total: 12.67 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: -1.84 Total: 5.31 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: -0.65 Total: -61.43 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: 0.17 Total: -21.54 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.72 -8.47 -43.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674706717.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.261 kcal (2) G-P(sol) polarization free energy of solvation -34.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds