Wall clock time and date at job start Tue Mar 31 2020 19:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46996 * 2 1 4 4 N 1.46904 * 109.47044 * 119.99398 * 2 1 3 5 5 C 1.46899 * 111.00232 * 274.99916 * 4 2 1 6 6 C 1.50704 * 109.47000 * 180.02562 * 5 4 2 7 7 O 1.21286 * 120.00216 * 0.02562 * 6 5 4 8 8 N 1.34783 * 119.99478 * 180.02562 * 6 5 4 9 9 C 1.37103 * 119.99655 * 179.97438 * 8 6 5 10 10 H 1.08004 * 119.99694 * 0.02562 * 9 8 6 11 11 C 1.38939 * 119.99977 * 179.97438 * 9 8 6 12 12 N 1.31413 * 120.00328 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00120 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47322 * 89.99757 * 13 11 9 15 15 H 1.48503 * 109.47555 * 210.00339 * 13 11 9 16 16 H 1.48501 * 109.47120 * 330.00046 * 13 11 9 17 17 C 1.52999 * 109.47039 * 239.99649 * 2 1 3 18 18 H 1.09003 * 109.46775 * 175.00365 * 17 2 1 19 19 C 1.52998 * 109.46703 * 294.99794 * 17 2 1 20 20 N 1.46491 * 109.47054 * 54.99997 * 17 2 1 21 21 C 1.34774 * 119.99975 * 154.99870 * 20 17 2 22 22 O 1.21286 * 120.00140 * 0.02562 * 21 20 17 23 23 C 1.50702 * 120.00236 * 179.97438 * 21 20 17 24 24 C 1.52996 * 109.47197 * 180.02562 * 23 21 20 25 25 N 1.46501 * 109.47323 * 180.02562 * 24 23 21 26 26 C 1.36890 * 126.39537 * 270.03108 * 25 24 23 27 27 C 1.34669 * 106.81617 * 179.97438 * 26 25 24 28 28 N 1.34134 * 108.02026 * 0.02562 * 27 26 25 29 29 C 1.30493 * 109.25480 * 0.02562 * 28 27 26 30 30 H 1.08994 * 109.47057 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46972 * 300.00419 * 1 2 3 32 32 H 1.08994 * 109.47218 * 60.00030 * 1 2 3 33 33 H 1.00901 * 110.99803 * 151.04771 * 4 2 1 34 34 H 1.08997 * 109.47261 * 300.00001 * 5 4 2 35 35 H 1.08998 * 109.46943 * 59.99948 * 5 4 2 36 36 H 0.96999 * 120.00097 * 0.02562 * 8 6 5 37 37 H 0.97002 * 120.00435 * 179.97438 * 12 11 9 38 38 H 1.09008 * 109.46789 * 179.97438 * 19 17 2 39 39 H 1.08996 * 109.47594 * 299.99577 * 19 17 2 40 40 H 1.09000 * 109.47295 * 60.00283 * 19 17 2 41 41 H 0.97000 * 120.00217 * 335.00292 * 20 17 2 42 42 H 1.09006 * 109.47101 * 60.00122 * 23 21 20 43 43 H 1.09002 * 109.47241 * 300.00434 * 23 21 20 44 44 H 1.09002 * 109.47343 * 60.00448 * 24 23 21 45 45 H 1.08998 * 109.47519 * 299.99826 * 24 23 21 46 46 H 1.07996 * 126.59258 * 359.97438 * 26 25 24 47 47 H 1.08002 * 125.99042 * 180.26007 * 27 26 25 48 48 H 1.08006 * 125.64571 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0825 0.2228 2.3469 6 6 2.5885 -0.5213 3.5558 7 8 2.8697 -1.6980 3.4699 8 7 2.7287 0.1210 4.7324 9 6 3.1886 -0.5560 5.8324 10 1 3.4389 -1.6039 5.7558 11 6 3.3336 0.1061 7.0452 12 7 3.0294 1.3812 7.1382 13 14 3.9608 -0.8161 8.5437 14 1 5.4418 -0.7220 8.5988 15 1 3.3806 -0.2170 9.7724 16 1 3.5586 -2.2426 8.4512 17 6 2.0400 -0.7213 -1.2492 18 1 3.1263 -0.6444 -1.2950 19 6 1.6352 -2.1955 -1.1877 20 7 1.4558 -0.1038 -2.4423 21 6 2.0912 -0.1940 -3.6274 22 8 3.1464 -0.7868 -3.7063 23 6 1.4901 0.4407 -4.8549 24 6 2.4038 0.1928 -6.0568 25 7 1.8197 0.8103 -7.2500 26 6 0.9541 0.2184 -8.1299 27 6 0.6697 1.1361 -9.0736 28 7 1.3437 2.2576 -8.7782 29 6 2.0353 2.0695 -7.6878 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 2.9173 -1.1204 1.0289 34 1 2.7589 1.0463 2.1182 35 1 1.0871 0.6165 2.5525 36 1 2.5035 1.0620 4.8012 37 1 3.1303 1.8434 7.9851 38 1 1.9982 -2.7094 -2.0779 39 1 2.0699 -2.6550 -0.3000 40 1 0.5489 -2.2724 -1.1418 41 1 0.6118 0.3700 -2.3793 42 1 1.3837 1.5136 -4.6942 43 1 0.5104 0.0034 -5.0474 44 1 2.5097 -0.8801 -6.2175 45 1 3.3836 0.6299 -5.8646 46 1 0.5727 -0.7906 -8.0774 47 1 0.0112 0.9952 -9.9179 48 1 2.6739 2.8001 -7.2135 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674706717.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:04 Heat of formation + Delta-G solvation = -35.023329 kcal Electronic energy + Delta-G solvation = -27971.340285 eV Core-core repulsion = 23868.349098 eV Total energy + Delta-G solvation = -4102.991187 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.92933 -41.12162 -40.17828 -38.62065 -36.08362 -35.74784 -35.32102 -33.28520 -32.49381 -31.15741 -30.27754 -29.95842 -28.14170 -26.23921 -25.91125 -24.39982 -22.23972 -21.92811 -21.38555 -21.12530 -20.74159 -19.92932 -18.85392 -18.08317 -17.42508 -17.30500 -16.81761 -16.65557 -16.54964 -16.23226 -15.89496 -15.67093 -15.31745 -15.22474 -14.94604 -14.73044 -14.39587 -14.35293 -14.25520 -13.92616 -13.57206 -13.53308 -13.42198 -13.39522 -13.07653 -13.05959 -12.84161 -12.52517 -12.41440 -12.34992 -12.12472 -11.93179 -11.66768 -11.50640 -11.10323 -10.91717 -10.57332 -10.35568 -10.14870 -10.01373 -9.43138 -9.37531 -8.46891 -5.95491 1.14422 1.37826 1.42006 1.54346 1.57084 1.69999 2.05527 2.21392 2.25686 2.31637 2.97288 3.20618 3.48347 3.59901 3.65552 3.72932 3.85407 3.91933 3.94805 4.14819 4.19755 4.30695 4.38836 4.44428 4.46311 4.48337 4.58837 4.64769 4.66274 4.78320 4.82963 4.83607 4.84720 4.99248 5.03869 5.29224 5.36270 5.40959 5.46469 5.51338 5.84991 5.88312 6.09098 6.28080 6.33733 6.49322 6.60104 7.12772 7.16878 7.19758 7.56436 8.11813 8.70358 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.034066 B = 0.001513 C = 0.001497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.729322 B =18496.310386 C =18701.584233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.081 3.919 3 H 0.059 0.941 4 N -0.669 5.669 5 C 0.067 3.933 6 C 0.437 3.563 7 O -0.623 6.623 8 N -0.573 5.573 9 C -0.335 4.335 10 H 0.078 0.922 11 C -0.011 4.011 12 N -0.919 5.919 13 Si 0.991 3.009 14 H -0.272 1.272 15 H -0.271 1.271 16 H -0.274 1.274 17 C 0.150 3.850 18 H 0.068 0.932 19 C -0.150 4.150 20 N -0.708 5.708 21 C 0.519 3.481 22 O -0.581 6.581 23 C -0.143 4.143 24 C 0.123 3.877 25 N -0.456 5.456 26 C -0.051 4.051 27 C -0.058 4.058 28 N -0.540 5.540 29 C 0.175 3.825 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.084 0.916 33 H 0.343 0.657 34 H 0.065 0.935 35 H 0.107 0.893 36 H 0.397 0.603 37 H 0.277 0.723 38 H 0.046 0.954 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.416 0.584 42 H 0.121 0.879 43 H 0.120 0.880 44 H 0.099 0.901 45 H 0.103 0.897 46 H 0.199 0.801 47 H 0.178 0.822 48 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.771 2.873 -26.562 27.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.029 4.029 3 H 0.077 0.923 4 N -0.303 5.303 5 C -0.066 4.066 6 C 0.225 3.775 7 O -0.509 6.509 8 N -0.210 5.210 9 C -0.464 4.464 10 H 0.096 0.904 11 C -0.211 4.211 12 N -0.560 5.560 13 Si 0.815 3.185 14 H -0.197 1.197 15 H -0.195 1.195 16 H -0.198 1.198 17 C 0.044 3.956 18 H 0.086 0.914 19 C -0.209 4.209 20 N -0.362 5.362 21 C 0.306 3.694 22 O -0.461 6.461 23 C -0.184 4.184 24 C 0.001 3.999 25 N -0.138 5.138 26 C -0.184 4.184 27 C -0.205 4.205 28 N -0.259 5.259 29 C -0.107 4.107 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.162 0.838 34 H 0.083 0.917 35 H 0.125 0.875 36 H 0.230 0.770 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.255 0.745 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.118 0.882 45 H 0.122 0.878 46 H 0.216 0.784 47 H 0.195 0.805 48 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -7.422 2.226 -26.669 27.772 hybrid contribution 0.773 0.005 1.346 1.552 sum -6.649 2.231 -25.323 26.277 Atomic orbital electron populations 1.21901 0.92888 1.02856 1.02405 1.21779 0.97542 0.95951 0.87649 0.92315 1.60218 1.34622 1.32139 1.03285 1.21577 1.02389 0.93593 0.89017 1.20894 0.83204 0.87991 0.85437 1.90497 1.56593 1.18241 1.85585 1.41927 1.58290 1.12599 1.08227 1.19664 1.42159 0.95976 0.88636 0.90371 1.26000 0.97207 0.96601 1.01297 1.69665 1.48562 1.09656 1.28148 0.84950 0.78454 0.78045 0.77028 1.19711 1.19526 1.19844 1.20815 0.97711 0.93138 0.83914 0.91418 1.22029 1.02520 0.94933 1.01371 1.46000 1.26390 1.56504 1.07317 1.20816 0.84172 0.79269 0.85170 1.90756 1.24463 1.44684 1.86181 1.21920 1.01351 1.04473 0.90612 1.21600 0.96942 1.00392 0.81008 1.45702 1.34959 1.12197 1.20964 1.23200 0.99524 1.01884 0.93805 1.22669 1.04950 0.90265 1.02596 1.70275 1.12322 1.28225 1.15064 1.25535 1.03241 0.87279 0.94677 0.92016 0.92605 0.89777 0.83759 0.91673 0.87526 0.76962 0.91315 0.93537 0.92092 0.91060 0.74525 0.86074 0.86175 0.88224 0.87843 0.78383 0.80452 0.75687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 8.93 71.98 0.64 -1.53 16 2 C 0.08 1.53 2.66 44.91 0.12 1.65 16 3 H 0.06 1.03 7.80 -2.39 -0.02 1.01 16 4 N -0.67 -18.95 5.14 -495.57 -2.55 -21.50 16 5 C 0.07 2.11 5.97 85.56 0.51 2.63 16 6 C 0.44 20.18 7.82 87.66 0.69 20.87 16 7 O -0.62 -33.83 15.78 -3.05 -0.05 -33.88 16 8 N -0.57 -28.81 5.29 -306.98 -1.62 -30.43 16 9 C -0.33 -18.83 9.68 84.04 0.81 -18.01 16 10 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 11 C -0.01 -0.59 5.50 84.92 0.47 -0.12 16 12 N -0.92 -48.91 13.05 21.66 0.28 -48.62 16 13 Si 0.99 42.53 29.55 68.60 2.03 44.56 16 14 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 15 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 16 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 17 C 0.15 2.75 2.30 44.99 0.10 2.85 16 18 H 0.07 1.56 7.58 -2.39 -0.02 1.54 16 19 C -0.15 -3.10 9.02 71.98 0.65 -2.45 16 20 N -0.71 -8.37 4.99 -442.55 -2.21 -10.58 16 21 C 0.52 6.99 7.79 87.66 0.68 7.67 16 22 O -0.58 -13.15 15.65 -3.05 -0.05 -13.19 16 23 C -0.14 -0.82 6.02 29.85 0.18 -0.65 16 24 C 0.12 1.00 5.44 86.38 0.47 1.47 16 25 N -0.46 -4.86 2.75 -529.07 -1.46 -6.32 16 26 C -0.05 -0.57 11.58 83.08 0.96 0.39 16 27 C -0.06 -0.90 11.87 83.52 0.99 0.09 16 28 N -0.54 -10.52 11.25 -200.31 -2.25 -12.77 16 29 C 0.18 2.37 12.56 180.27 2.26 4.63 16 30 H 0.06 1.08 6.57 -2.39 -0.02 1.06 16 31 H 0.05 0.95 7.45 -2.38 -0.02 0.94 16 32 H 0.08 0.67 6.29 -2.39 -0.02 0.66 16 33 H 0.34 10.72 7.61 -89.69 -0.68 10.03 16 34 H 0.07 1.82 8.05 -2.39 -0.02 1.80 16 35 H 0.11 3.00 7.44 -2.39 -0.02 2.99 16 36 H 0.40 18.83 7.90 -92.71 -0.73 18.10 16 37 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 38 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 39 H 0.06 1.54 7.17 -2.39 -0.02 1.52 16 40 H 0.07 1.30 6.57 -2.39 -0.02 1.28 16 41 H 0.42 2.46 6.58 -92.71 -0.61 1.85 16 42 H 0.12 0.33 8.14 -2.38 -0.02 0.31 16 43 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 44 H 0.10 0.90 8.10 -2.39 -0.02 0.88 16 45 H 0.10 0.89 8.10 -2.39 -0.02 0.87 16 46 H 0.20 1.00 8.06 -2.91 -0.02 0.97 16 47 H 0.18 2.07 8.06 -2.91 -0.02 2.05 16 48 H 0.23 1.59 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -77.44 399.17 0.65 -76.78 By element: Atomic # 1 Polarization: 37.48 SS G_CDS: -1.02 Total: 36.46 kcal Atomic # 6 Polarization: 9.95 SS G_CDS: 9.54 Total: 19.49 kcal Atomic # 7 Polarization: -120.42 SS G_CDS: -9.80 Total: -130.22 kcal Atomic # 8 Polarization: -46.98 SS G_CDS: -0.10 Total: -47.07 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -77.44 0.65 -76.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674706717.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.761 kcal (2) G-P(sol) polarization free energy of solvation -77.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds