Wall clock time and date at job start Tue Mar 31 2020 20:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 109.47555 * 2 1 4 4 C 1.53001 * 109.47103 * 239.99358 * 2 1 3 5 5 N 1.46504 * 109.47222 * 185.00108 * 4 2 1 6 6 C 1.34771 * 120.00493 * 180.02562 * 5 4 2 7 7 O 1.21281 * 119.99719 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00375 * 180.02562 * 6 5 4 9 9 H 1.08994 * 109.47009 * 59.99944 * 8 6 5 10 10 C 1.53002 * 109.47160 * 299.99691 * 8 6 5 11 11 N 1.46502 * 109.47116 * 180.02562 * 8 6 5 12 12 C 1.34942 * 126.03991 * 84.97435 * 11 8 6 13 13 C 1.35316 * 107.74613 * 179.75096 * 12 11 8 14 14 C 1.39870 * 107.92161 * 0.39436 * 13 12 11 15 15 N 1.30836 * 108.20019 * 359.59732 * 14 13 12 16 16 N 1.46901 * 109.46974 * 120.00181 * 2 1 3 17 17 C 1.46893 * 111.00432 * 58.94903 * 16 2 1 18 18 C 1.46904 * 110.99568 * 294.99854 * 16 2 1 19 19 C 1.50704 * 109.46858 * 190.00201 * 18 16 2 20 20 O 1.21284 * 120.00217 * 0.02562 * 19 18 16 21 21 N 1.34781 * 119.99464 * 180.02562 * 19 18 16 22 22 C 1.37105 * 119.99667 * 179.97438 * 21 19 18 23 23 H 1.08004 * 119.99883 * 359.97438 * 22 21 19 24 24 C 1.38948 * 119.99960 * 180.02562 * 22 21 19 25 25 N 1.31413 * 119.99796 * 359.97438 * 24 22 21 26 26 Si 1.86790 * 119.99882 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.47412 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47458 * 120.00039 * 26 24 22 29 29 H 1.48506 * 109.47377 * 239.99580 * 26 24 22 30 30 H 1.08992 * 109.46712 * 300.00078 * 1 2 3 31 31 H 1.09003 * 109.46322 * 60.00530 * 1 2 3 32 32 H 1.08995 * 109.46828 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46963 * 65.00877 * 4 2 1 34 34 H 1.08996 * 109.47676 * 305.00038 * 4 2 1 35 35 H 0.97003 * 119.99625 * 0.02562 * 5 4 2 36 36 H 1.08997 * 109.47230 * 180.02562 * 10 8 6 37 37 H 1.08999 * 109.46993 * 300.00355 * 10 8 6 38 38 H 1.09000 * 109.47031 * 59.99916 * 10 8 6 39 39 H 1.08002 * 126.12737 * 359.97438 * 12 11 8 40 40 H 1.07998 * 126.04386 * 180.27449 * 13 12 11 41 41 H 1.08002 * 125.90382 * 179.86983 * 14 13 12 42 42 H 1.09004 * 109.46908 * 59.99952 * 17 16 2 43 43 H 1.09005 * 109.47579 * 180.02562 * 17 16 2 44 44 H 1.08998 * 109.47517 * 300.00605 * 17 16 2 45 45 H 1.09001 * 109.47373 * 310.00094 * 18 16 2 46 46 H 1.08999 * 109.47365 * 70.00195 * 18 16 2 47 47 H 0.96999 * 120.00563 * 359.97438 * 21 19 18 48 48 H 0.97002 * 119.99725 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 3.5001 -0.8266 -1.1905 6 6 4.1732 -1.4285 -2.1910 7 8 3.5701 -1.8836 -3.1397 8 6 5.6750 -1.5372 -2.1303 9 1 5.9630 -2.1007 -1.2429 10 6 6.2856 -0.1358 -2.0650 11 7 6.1635 -2.2268 -3.3270 12 6 6.4282 -1.6550 -4.5204 13 6 6.8618 -2.6268 -5.3562 14 6 6.8535 -3.8354 -4.6521 15 7 6.4383 -3.5962 -3.4347 16 7 2.0197 -0.6925 1.1994 17 6 1.5283 -2.0761 1.2461 18 6 1.6487 0.0392 2.4180 19 6 2.3679 -0.5571 3.6006 20 8 3.1162 -1.4986 3.4436 21 7 2.1794 -0.0441 4.8326 22 6 2.8333 -0.5868 5.9085 23 1 3.4990 -1.4258 5.7688 24 6 2.6387 -0.0583 7.1787 25 7 1.8282 0.9621 7.3487 26 14 3.5301 -0.7974 8.6444 27 1 4.3781 -1.9284 8.1894 28 1 4.3845 0.2388 9.2782 29 1 2.5359 -1.2905 9.6313 30 1 -0.3632 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 1.7518 -0.1584 -2.1370 34 1 1.6055 -1.7199 -1.2951 35 1 3.9824 -0.4629 -0.4315 36 1 7.3718 -0.2144 -2.0216 37 1 5.9975 0.4277 -2.9525 38 1 5.9222 0.3777 -1.1748 39 1 6.3175 -0.6086 -4.7636 40 1 7.1597 -2.4933 -6.3857 41 1 7.1442 -4.7988 -5.0442 42 1 1.8762 -2.6151 0.3648 43 1 1.9053 -2.5656 2.1441 44 1 0.4385 -2.0742 1.2640 45 1 1.9297 1.0870 2.3125 46 1 0.5722 -0.0344 2.5726 47 1 1.5812 0.7091 4.9581 48 1 1.6921 1.3308 8.2355 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674894474.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:21 Heat of formation + Delta-G solvation = 23.648505 kcal Electronic energy + Delta-G solvation = -29332.112621 eV Core-core repulsion = 25231.665635 eV Total energy + Delta-G solvation = -4100.446985 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.42273 -39.90255 -38.91289 -37.37912 -34.81264 -34.44024 -33.85496 -31.33921 -31.06562 -30.19089 -29.61866 -28.00499 -26.70677 -25.45648 -24.77894 -23.80501 -21.58260 -21.15333 -20.30373 -19.74905 -19.13365 -17.89445 -17.80107 -17.24843 -16.61243 -16.02510 -15.76518 -15.21266 -14.96452 -14.84547 -14.55575 -14.45510 -14.12276 -13.93787 -13.73375 -13.58294 -13.25824 -13.16319 -13.03986 -12.91612 -12.74959 -12.56644 -12.34032 -11.98747 -11.86645 -11.82605 -11.50225 -11.28175 -11.27368 -10.99451 -10.82179 -10.77292 -10.38140 -10.27176 -10.21788 -9.53406 -9.47592 -9.15853 -8.68947 -8.54087 -8.03966 -7.93463 -6.46776 -3.87590 1.73888 2.20684 2.40559 2.79042 3.10283 3.12527 3.23780 3.30543 3.83862 3.88070 4.17936 4.19845 4.43577 4.59052 4.60072 4.67417 4.83689 4.88494 5.05371 5.10401 5.13956 5.20439 5.22684 5.37569 5.42004 5.44021 5.49373 5.54475 5.66085 5.68634 5.71461 5.82951 5.85349 5.90058 5.92450 6.09806 6.21614 6.30290 6.51876 6.53827 6.82825 7.14579 7.26181 7.39475 7.50737 7.61654 8.01408 8.03966 8.56215 9.13366 9.49183 10.00522 10.70902 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015000 B = 0.002319 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.215371 B =12070.973085 C =13258.171735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.064 3.936 3 H 0.089 0.911 4 C 0.132 3.868 5 N -0.706 5.706 6 C 0.501 3.499 7 O -0.532 6.532 8 C 0.142 3.858 9 H 0.132 0.868 10 C -0.160 4.160 11 N -0.352 5.352 12 C 0.067 3.933 13 C -0.277 4.277 14 C 0.044 3.956 15 N -0.289 5.289 16 N -0.511 5.511 17 C 0.016 3.984 18 C 0.044 3.956 19 C 0.443 3.557 20 O -0.577 6.577 21 N -0.564 5.564 22 C -0.298 4.298 23 H 0.104 0.896 24 C 0.022 3.978 25 N -0.901 5.901 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.281 1.281 29 H -0.282 1.282 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.413 0.587 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.169 0.831 40 H 0.146 0.854 41 H 0.182 0.818 42 H 0.060 0.940 43 H 0.096 0.904 44 H 0.020 0.980 45 H 0.087 0.913 46 H 0.050 0.950 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.560 2.149 -20.570 20.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.046 4.046 3 H 0.107 0.893 4 C 0.008 3.992 5 N -0.359 5.359 6 C 0.284 3.716 7 O -0.408 6.408 8 C 0.035 3.965 9 H 0.149 0.851 10 C -0.218 4.218 11 N -0.134 5.134 12 C -0.079 4.079 13 C -0.307 4.307 14 C -0.142 4.142 15 N -0.109 5.109 16 N -0.235 5.235 17 C -0.132 4.132 18 C -0.087 4.087 19 C 0.228 3.772 20 O -0.462 6.462 21 N -0.201 5.201 22 C -0.427 4.427 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.543 5.543 26 Si 0.756 3.244 27 H -0.192 1.192 28 H -0.207 1.207 29 H -0.208 1.208 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.250 0.750 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.111 0.889 39 H 0.186 0.814 40 H 0.163 0.837 41 H 0.199 0.801 42 H 0.079 0.921 43 H 0.115 0.885 44 H 0.039 0.961 45 H 0.105 0.895 46 H 0.068 0.932 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.780 0.832 -19.926 20.298 hybrid contribution -0.669 0.777 0.503 1.142 sum 3.111 1.609 -19.423 19.736 Atomic orbital electron populations 1.22403 0.96514 1.02906 1.02747 1.22048 0.93593 0.98612 0.90314 0.89255 1.21417 0.79778 1.01114 0.96924 1.45781 1.07881 1.59022 1.23243 1.20643 0.89430 0.78422 0.83077 1.90748 1.69626 1.46976 1.33488 1.21114 0.91748 0.95517 0.88106 0.85070 1.22161 1.02614 0.92622 1.04440 1.48211 1.50286 1.05798 1.09132 1.22388 0.99617 0.99882 0.85978 1.21441 1.15212 0.92323 1.01695 1.23865 0.99418 0.99521 0.91437 1.77400 1.21084 0.91846 1.20617 1.61838 1.58887 1.02535 1.00197 1.22605 0.96830 0.89354 1.04393 1.21883 0.98214 0.98377 0.90227 1.19724 0.86733 0.86935 0.83774 1.90490 1.40759 1.30180 1.84729 1.41882 1.41490 1.31167 1.05529 1.19735 1.23385 1.14771 0.84850 0.87865 1.25262 0.97318 0.96341 0.99055 1.69618 1.36643 1.23917 1.24098 0.85812 0.79034 0.78955 0.80620 1.19214 1.20735 1.20782 0.91560 0.91902 0.91793 0.91157 0.91287 0.74993 0.90070 0.91048 0.88895 0.81423 0.83650 0.80117 0.92133 0.88547 0.96114 0.89454 0.93154 0.77537 0.91915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.79 8.50 37.16 0.32 -1.48 16 2 C 0.06 0.67 2.50 -67.71 -0.17 0.50 16 3 H 0.09 0.85 8.03 -51.93 -0.42 0.43 16 4 C 0.13 1.44 4.69 -4.04 -0.02 1.42 16 5 N -0.71 -7.76 5.28 -60.29 -0.32 -8.08 16 6 C 0.50 6.31 7.22 -10.99 -0.08 6.23 16 7 O -0.53 -8.82 16.42 5.56 0.09 -8.73 16 8 C 0.14 1.49 3.73 -69.08 -0.26 1.23 16 9 H 0.13 1.37 8.14 -51.93 -0.42 0.95 16 10 C -0.16 -1.08 8.73 37.16 0.32 -0.76 16 11 N -0.35 -4.37 3.02 -55.99 -0.17 -4.54 16 12 C 0.07 0.70 10.57 -17.23 -0.18 0.52 16 13 C -0.28 -2.83 10.80 -40.01 -0.43 -3.26 16 14 C 0.04 0.50 12.03 -17.37 -0.21 0.30 16 15 N -0.29 -4.11 12.58 30.62 0.39 -3.73 16 16 N -0.51 -7.21 3.93 -236.33 -0.93 -8.14 16 17 C 0.02 0.24 8.45 60.06 0.51 0.75 16 18 C 0.04 0.70 4.89 -4.97 -0.02 0.68 16 19 C 0.44 9.69 7.47 -10.98 -0.08 9.61 16 20 O -0.58 -14.51 13.91 5.55 0.08 -14.43 16 21 N -0.56 -13.58 5.29 -10.96 -0.06 -13.63 16 22 C -0.30 -8.01 9.68 -14.93 -0.14 -8.15 16 23 H 0.10 2.93 7.16 -52.48 -0.38 2.55 16 24 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 25 N -0.90 -23.88 13.05 55.50 0.72 -23.15 16 26 Si 0.93 20.58 29.55 -169.99 -5.02 15.55 16 27 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 28 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 29 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 30 H 0.07 0.66 6.75 -51.93 -0.35 0.31 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.65 6.39 -51.93 -0.33 0.32 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.86 6.70 -51.93 -0.35 0.51 16 35 H 0.41 4.24 7.56 -40.82 -0.31 3.93 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.43 7.15 -51.93 -0.37 0.06 16 38 H 0.09 0.52 7.56 -51.93 -0.39 0.12 16 39 H 0.17 1.23 7.26 -52.49 -0.38 0.85 16 40 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 41 H 0.18 1.46 8.06 -52.49 -0.42 1.03 16 42 H 0.06 0.88 6.44 -51.93 -0.33 0.54 16 43 H 0.10 1.83 5.83 -51.93 -0.30 1.53 16 44 H 0.02 0.29 6.28 -51.93 -0.33 -0.04 16 45 H 0.09 1.22 8.00 -51.93 -0.42 0.81 16 46 H 0.05 0.75 6.94 -51.93 -0.36 0.39 16 47 H 0.39 9.04 7.90 -40.82 -0.32 8.72 16 48 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 392.05 15.07 5.91 5.91 Total: -1.00 -34.49 392.05 -6.87 -41.36 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: -7.01 Total: 13.53 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: -0.55 Total: 8.07 kcal Atomic # 7 Polarization: -60.90 SS G_CDS: -0.36 Total: -61.26 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: 0.17 Total: -23.16 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.49 -6.87 -41.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674894474.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.009 kcal (2) G-P(sol) polarization free energy of solvation -34.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds