Wall clock time and date at job start Tue Mar 31 2020 20:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 109.47555 * 2 1 4 4 C 1.53001 * 109.47103 * 239.99358 * 2 1 3 5 5 N 1.46504 * 109.47222 * 185.00108 * 4 2 1 6 6 C 1.34771 * 120.00493 * 180.02562 * 5 4 2 7 7 O 1.21281 * 119.99719 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00375 * 180.02562 * 6 5 4 9 9 H 1.08994 * 109.47009 * 59.99944 * 8 6 5 10 10 C 1.53002 * 109.47160 * 299.99691 * 8 6 5 11 11 N 1.46502 * 109.47116 * 180.02562 * 8 6 5 12 12 C 1.34942 * 126.03991 * 84.97435 * 11 8 6 13 13 C 1.35316 * 107.74613 * 179.75096 * 12 11 8 14 14 C 1.39870 * 107.92161 * 0.39436 * 13 12 11 15 15 N 1.30836 * 108.20019 * 359.59732 * 14 13 12 16 16 N 1.46901 * 109.46974 * 120.00181 * 2 1 3 17 17 C 1.46893 * 111.00432 * 58.94903 * 16 2 1 18 18 C 1.46904 * 110.99568 * 294.99854 * 16 2 1 19 19 C 1.50704 * 109.46858 * 190.00201 * 18 16 2 20 20 O 1.21284 * 120.00217 * 0.02562 * 19 18 16 21 21 N 1.34781 * 119.99464 * 180.02562 * 19 18 16 22 22 C 1.37105 * 119.99667 * 179.97438 * 21 19 18 23 23 H 1.08004 * 119.99883 * 359.97438 * 22 21 19 24 24 C 1.38948 * 119.99960 * 180.02562 * 22 21 19 25 25 N 1.31413 * 119.99796 * 359.97438 * 24 22 21 26 26 Si 1.86790 * 119.99882 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.47412 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47458 * 120.00039 * 26 24 22 29 29 H 1.48506 * 109.47377 * 239.99580 * 26 24 22 30 30 H 1.08992 * 109.46712 * 300.00078 * 1 2 3 31 31 H 1.09003 * 109.46322 * 60.00530 * 1 2 3 32 32 H 1.08995 * 109.46828 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46963 * 65.00877 * 4 2 1 34 34 H 1.08996 * 109.47676 * 305.00038 * 4 2 1 35 35 H 0.97003 * 119.99625 * 0.02562 * 5 4 2 36 36 H 1.08997 * 109.47230 * 180.02562 * 10 8 6 37 37 H 1.08999 * 109.46993 * 300.00355 * 10 8 6 38 38 H 1.09000 * 109.47031 * 59.99916 * 10 8 6 39 39 H 1.08002 * 126.12737 * 359.97438 * 12 11 8 40 40 H 1.07998 * 126.04386 * 180.27449 * 13 12 11 41 41 H 1.08002 * 125.90382 * 179.86983 * 14 13 12 42 42 H 1.09004 * 109.46908 * 59.99952 * 17 16 2 43 43 H 1.09005 * 109.47579 * 180.02562 * 17 16 2 44 44 H 1.08998 * 109.47517 * 300.00605 * 17 16 2 45 45 H 1.09001 * 109.47373 * 310.00094 * 18 16 2 46 46 H 1.08999 * 109.47365 * 70.00195 * 18 16 2 47 47 H 0.96999 * 120.00563 * 359.97438 * 21 19 18 48 48 H 0.97002 * 119.99725 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 3.5001 -0.8266 -1.1905 6 6 4.1732 -1.4285 -2.1910 7 8 3.5701 -1.8836 -3.1397 8 6 5.6750 -1.5372 -2.1303 9 1 5.9630 -2.1007 -1.2429 10 6 6.2856 -0.1358 -2.0650 11 7 6.1635 -2.2268 -3.3270 12 6 6.4282 -1.6550 -4.5204 13 6 6.8618 -2.6268 -5.3562 14 6 6.8535 -3.8354 -4.6521 15 7 6.4383 -3.5962 -3.4347 16 7 2.0197 -0.6925 1.1994 17 6 1.5283 -2.0761 1.2461 18 6 1.6487 0.0392 2.4180 19 6 2.3679 -0.5571 3.6006 20 8 3.1162 -1.4986 3.4436 21 7 2.1794 -0.0441 4.8326 22 6 2.8333 -0.5868 5.9085 23 1 3.4990 -1.4258 5.7688 24 6 2.6387 -0.0583 7.1787 25 7 1.8282 0.9621 7.3487 26 14 3.5301 -0.7974 8.6444 27 1 4.3781 -1.9284 8.1894 28 1 4.3845 0.2388 9.2782 29 1 2.5359 -1.2905 9.6313 30 1 -0.3632 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 1.7518 -0.1584 -2.1370 34 1 1.6055 -1.7199 -1.2951 35 1 3.9824 -0.4629 -0.4315 36 1 7.3718 -0.2144 -2.0216 37 1 5.9975 0.4277 -2.9525 38 1 5.9222 0.3777 -1.1748 39 1 6.3175 -0.6086 -4.7636 40 1 7.1597 -2.4933 -6.3857 41 1 7.1442 -4.7988 -5.0442 42 1 1.8762 -2.6151 0.3648 43 1 1.9053 -2.5656 2.1441 44 1 0.4385 -2.0742 1.2640 45 1 1.9297 1.0870 2.3125 46 1 0.5722 -0.0344 2.5726 47 1 1.5812 0.7091 4.9581 48 1 1.6921 1.3308 8.2355 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674894474.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:20 Heat of formation + Delta-G solvation = -2.971338 kcal Electronic energy + Delta-G solvation = -29333.266944 eV Core-core repulsion = 25231.665635 eV Total energy + Delta-G solvation = -4101.601308 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.25884 -40.94099 -40.31261 -38.77648 -35.98388 -35.67758 -35.24067 -33.24346 -32.12530 -31.02218 -30.36873 -29.36924 -27.56592 -27.01561 -25.72321 -25.12861 -22.47975 -21.96920 -21.44149 -20.84430 -20.52898 -19.78415 -18.70802 -18.12661 -17.90969 -17.11626 -16.87579 -16.57476 -16.24911 -16.22567 -15.78625 -15.64574 -15.33743 -15.03911 -14.94478 -14.54870 -14.42550 -14.22795 -13.97765 -13.76867 -13.62513 -13.46913 -13.42477 -13.27751 -13.07458 -12.90331 -12.81491 -12.61864 -12.43902 -12.36905 -12.27021 -12.11454 -11.77874 -11.62502 -11.42841 -11.21039 -10.37253 -10.24537 -10.12548 -9.96131 -9.50898 -9.19461 -8.44525 -5.91948 0.91018 1.36922 1.41973 1.42683 1.45013 1.55782 1.99117 2.10657 2.21558 2.29764 2.75848 3.23240 3.41995 3.47618 3.66772 3.72303 3.82064 3.98514 4.05957 4.14613 4.25908 4.30150 4.35404 4.54646 4.56531 4.56915 4.60063 4.63248 4.66716 4.72664 4.74727 4.84677 4.88750 5.00554 5.07073 5.16295 5.18468 5.28775 5.38768 5.44025 5.74773 5.88313 6.06718 6.07482 6.19133 6.47426 6.64344 6.78122 7.09999 7.17077 7.61723 8.17768 8.72975 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015000 B = 0.002319 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.215371 B =12070.973085 C =13258.171735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.072 3.928 3 H 0.113 0.887 4 C 0.134 3.866 5 N -0.697 5.697 6 C 0.502 3.498 7 O -0.576 6.576 8 C 0.139 3.861 9 H 0.124 0.876 10 C -0.151 4.151 11 N -0.364 5.364 12 C 0.062 3.938 13 C -0.284 4.284 14 C 0.037 3.963 15 N -0.344 5.344 16 N -0.520 5.520 17 C 0.026 3.974 18 C 0.058 3.942 19 C 0.443 3.557 20 O -0.613 6.613 21 N -0.577 5.577 22 C -0.326 4.326 23 H 0.077 0.923 24 C -0.014 4.014 25 N -0.921 5.921 26 Si 0.988 3.012 27 H -0.275 1.275 28 H -0.271 1.271 29 H -0.274 1.274 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.051 0.949 35 H 0.418 0.582 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.106 0.894 39 H 0.198 0.802 40 H 0.172 0.828 41 H 0.205 0.795 42 H 0.062 0.938 43 H 0.054 0.946 44 H 0.034 0.966 45 H 0.117 0.883 46 H 0.068 0.932 47 H 0.396 0.604 48 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.457 4.092 -21.584 22.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.037 4.037 3 H 0.130 0.870 4 C 0.010 3.990 5 N -0.349 5.349 6 C 0.286 3.714 7 O -0.456 6.456 8 C 0.033 3.967 9 H 0.142 0.858 10 C -0.209 4.209 11 N -0.146 5.146 12 C -0.084 4.084 13 C -0.313 4.313 14 C -0.149 4.149 15 N -0.165 5.165 16 N -0.244 5.244 17 C -0.122 4.122 18 C -0.073 4.073 19 C 0.230 3.770 20 O -0.499 6.499 21 N -0.214 5.214 22 C -0.456 4.456 23 H 0.095 0.905 24 C -0.213 4.213 25 N -0.562 5.562 26 Si 0.813 3.187 27 H -0.199 1.199 28 H -0.197 1.197 29 H -0.199 1.199 30 H 0.086 0.914 31 H 0.102 0.898 32 H 0.073 0.927 33 H 0.102 0.898 34 H 0.069 0.931 35 H 0.256 0.744 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.125 0.875 39 H 0.215 0.785 40 H 0.189 0.811 41 H 0.222 0.778 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.053 0.947 45 H 0.135 0.865 46 H 0.086 0.914 47 H 0.229 0.771 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.667 2.804 -20.933 21.436 hybrid contribution -0.648 0.136 0.715 0.974 sum 3.020 2.940 -20.218 20.653 Atomic orbital electron populations 1.22377 0.95293 1.02697 1.03894 1.22109 0.94498 0.99028 0.88035 0.86953 1.21433 0.79531 1.00405 0.97669 1.45769 1.08062 1.58225 1.22859 1.21011 0.90280 0.77550 0.82524 1.90720 1.70649 1.48949 1.35236 1.21274 0.90462 0.97387 0.87592 0.85826 1.22181 1.02856 0.90230 1.05676 1.48391 1.50654 1.05431 1.10134 1.23000 0.98642 1.01402 0.85338 1.21850 1.14877 0.91699 1.02873 1.24416 0.98375 1.01153 0.90929 1.77322 1.23299 0.93481 1.22421 1.61758 1.59699 1.02081 1.00865 1.22380 0.97481 0.90021 1.02317 1.21749 0.98160 0.99235 0.88133 1.20828 0.85700 0.85839 0.84623 1.90479 1.42234 1.31682 1.85479 1.41945 1.41964 1.31665 1.05863 1.19635 1.24365 1.15039 0.86550 0.90456 1.25959 0.97844 0.96620 1.00904 1.69670 1.37190 1.24445 1.24895 0.84935 0.78059 0.78141 0.77611 1.19943 1.19654 1.19932 0.91406 0.89760 0.92707 0.89796 0.93111 0.74406 0.89275 0.89836 0.87506 0.78497 0.81055 0.77827 0.91914 0.92714 0.94727 0.86539 0.91442 0.77066 0.91456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.96 8.50 71.98 0.61 -2.35 16 2 C 0.07 1.31 2.50 44.92 0.11 1.43 16 3 H 0.11 1.64 8.03 -2.39 -0.02 1.63 16 4 C 0.13 2.68 4.69 86.38 0.40 3.09 16 5 N -0.70 -14.48 5.28 -463.06 -2.45 -16.93 16 6 C 0.50 12.43 7.22 87.66 0.63 13.07 16 7 O -0.58 -19.14 16.42 -3.03 -0.05 -19.19 16 8 C 0.14 2.87 3.73 44.24 0.17 3.04 16 9 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 10 C -0.15 -1.76 8.73 71.98 0.63 -1.13 16 11 N -0.36 -8.93 3.02 -331.07 -1.00 -9.93 16 12 C 0.06 1.21 10.57 83.54 0.88 2.09 16 13 C -0.28 -5.41 10.80 21.99 0.24 -5.18 16 14 C 0.04 0.84 12.03 85.24 1.03 1.86 16 15 N -0.34 -9.99 12.58 -57.02 -0.72 -10.71 16 16 N -0.52 -13.86 3.93 -901.60 -3.54 -17.41 16 17 C 0.03 0.79 8.45 127.69 1.08 1.87 16 18 C 0.06 1.73 4.89 85.56 0.42 2.14 16 19 C 0.44 19.41 7.47 87.66 0.66 20.06 16 20 O -0.61 -31.59 13.91 -3.04 -0.04 -31.63 16 21 N -0.58 -28.00 5.29 -306.97 -1.62 -29.62 16 22 C -0.33 -17.90 9.68 84.04 0.81 -17.08 16 23 H 0.08 4.57 7.16 -2.91 -0.02 4.55 16 24 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 25 N -0.92 -48.41 13.05 21.66 0.28 -48.13 16 26 Si 0.99 42.23 29.55 68.60 2.03 44.25 16 27 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 28 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 29 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 30 H 0.07 1.11 6.75 -2.39 -0.02 1.09 16 31 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.05 1.00 6.39 -2.39 -0.02 0.98 16 33 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.05 1.23 6.70 -2.39 -0.02 1.21 16 35 H 0.42 7.94 7.56 -92.71 -0.70 7.24 16 36 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.08 0.78 7.15 -2.39 -0.02 0.76 16 38 H 0.11 0.94 7.56 -2.39 -0.02 0.92 16 39 H 0.20 2.41 7.26 -2.91 -0.02 2.39 16 40 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 41 H 0.21 3.18 8.06 -2.91 -0.02 3.16 16 42 H 0.06 1.84 6.44 -2.38 -0.02 1.83 16 43 H 0.05 2.14 5.83 -2.38 -0.01 2.13 16 44 H 0.03 0.93 6.28 -2.39 -0.02 0.92 16 45 H 0.12 2.86 8.00 -2.39 -0.02 2.84 16 46 H 0.07 1.83 6.94 -2.39 -0.02 1.81 16 47 H 0.40 18.23 7.90 -92.71 -0.73 17.49 16 48 H 0.28 13.62 8.31 -92.71 -0.77 12.85 16 Total: -1.00 -77.39 392.05 0.60 -76.80 By element: Atomic # 1 Polarization: 40.27 SS G_CDS: -0.43 Total: 39.84 kcal Atomic # 6 Polarization: 14.52 SS G_CDS: 8.14 Total: 22.66 kcal Atomic # 7 Polarization: -123.68 SS G_CDS: -9.04 Total: -132.72 kcal Atomic # 8 Polarization: -50.73 SS G_CDS: -0.09 Total: -50.82 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.25 kcal Total: -77.39 0.60 -76.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674894474.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.826 kcal (2) G-P(sol) polarization free energy of solvation -77.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds