Wall clock time and date at job start Tue Mar 31 2020 20:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47709 * 2 1 4 4 C 1.50699 * 109.47260 * 239.99683 * 2 1 3 5 5 O 1.21280 * 120.00100 * 239.72619 * 4 2 1 6 6 N 1.34774 * 119.99796 * 60.00398 * 4 2 1 7 7 C 1.46504 * 120.00170 * 179.72162 * 6 4 2 8 8 C 1.53002 * 109.47316 * 175.18651 * 7 6 4 9 9 H 1.08997 * 109.46988 * 295.32492 * 8 7 6 10 10 C 1.52996 * 109.47160 * 175.31815 * 8 7 6 11 11 N 1.46902 * 109.46908 * 55.31891 * 8 7 6 12 12 C 1.46895 * 111.00333 * 192.49267 * 11 8 7 13 13 C 1.46906 * 110.99784 * 68.53730 * 11 8 7 14 14 C 1.50695 * 109.47062 * 189.99661 * 13 11 8 15 15 O 1.21291 * 120.00344 * 0.02562 * 14 13 11 16 16 N 1.34780 * 120.00007 * 179.97438 * 14 13 11 17 17 C 1.37097 * 120.00260 * 179.97438 * 16 14 13 18 18 H 1.08004 * 119.99846 * 0.02562 * 17 16 14 19 19 C 1.38946 * 119.99972 * 180.02562 * 17 16 14 20 20 N 1.31404 * 120.00195 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99782 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47042 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46976 * 120.00008 * 21 19 17 24 24 H 1.48495 * 109.47106 * 239.99739 * 21 19 17 25 25 N 1.46506 * 109.47082 * 120.00032 * 2 1 3 26 26 C 1.34952 * 126.03509 * 34.71455 * 25 2 1 27 27 C 1.35315 * 107.74136 * 179.84270 * 26 25 2 28 28 C 1.39868 * 107.92389 * 0.42241 * 27 26 25 29 29 N 1.30836 * 108.20020 * 359.73827 * 28 27 26 30 30 H 1.09002 * 109.46648 * 59.99952 * 1 2 3 31 31 H 1.09001 * 109.47273 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47240 * 300.00193 * 1 2 3 33 33 H 0.97002 * 120.00253 * 359.72767 * 6 4 2 34 34 H 1.08995 * 109.47330 * 295.19142 * 7 6 4 35 35 H 1.08999 * 109.46605 * 55.19120 * 7 6 4 36 36 H 1.08997 * 109.47051 * 60.00457 * 10 8 7 37 37 H 1.08999 * 109.47394 * 180.02562 * 10 8 7 38 38 H 1.08998 * 109.47397 * 300.00661 * 10 8 7 39 39 H 1.09005 * 109.46918 * 53.76410 * 12 11 8 40 40 H 1.08998 * 109.47335 * 173.76284 * 12 11 8 41 41 H 1.08997 * 109.47112 * 293.76699 * 12 11 8 42 42 H 1.08997 * 109.47293 * 310.00531 * 13 11 8 43 43 H 1.09004 * 109.46638 * 70.00458 * 13 11 8 44 44 H 0.97002 * 119.99670 * 0.02562 * 16 14 13 45 45 H 0.97002 * 120.00315 * 179.97438 * 20 19 17 46 46 H 1.08003 * 126.12450 * 0.02562 * 26 25 2 47 47 H 1.08005 * 126.03388 * 180.16035 * 27 26 25 48 48 H 1.07998 * 125.89734 * 179.71997 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7337 -1.6936 -1.1191 6 7 1.7068 -0.2500 -2.4545 7 6 2.2002 -0.9371 -3.6507 8 6 1.5930 -0.2903 -4.8973 9 1 0.5136 -0.4419 -4.8961 10 6 2.1967 -0.9300 -6.1492 11 7 1.8852 1.1494 -4.8936 12 6 1.0807 1.8525 -5.9017 13 6 3.3188 1.3961 -5.0985 14 6 3.6192 2.8511 -4.8460 15 8 2.7270 3.6080 -4.5264 16 7 4.8796 3.3111 -4.9744 17 6 5.1528 4.6349 -4.7453 18 1 4.3582 5.3090 -4.4614 19 6 6.4520 5.1092 -4.8782 20 7 7.4189 4.2889 -5.2230 21 14 6.8245 6.9128 -4.5652 22 1 5.5727 7.6191 -4.1916 23 1 7.8078 7.0304 -3.4586 24 1 7.3891 7.5224 -5.7959 25 7 2.0183 -0.6906 1.1962 26 6 1.4372 -1.7526 1.7926 27 6 2.1965 -2.0928 2.8598 28 6 3.2734 -1.2025 2.9231 29 7 3.1675 -0.3615 1.9264 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.1459 0.5364 -2.5436 34 1 3.2864 -0.8583 -3.6929 35 1 1.9133 -1.9879 -3.6103 36 1 1.9798 -1.9981 -6.1519 37 1 1.7645 -0.4689 -7.0373 38 1 3.2761 -0.7784 -6.1502 39 1 0.0263 1.6203 -5.7516 40 1 1.2335 2.9272 -5.8035 41 1 1.3851 1.5316 -6.8978 42 1 3.8957 0.7808 -4.4081 43 1 3.5882 1.1421 -6.1237 44 1 5.5932 2.7057 -5.2297 45 1 8.3259 4.6200 -5.3161 46 1 0.5303 -2.2448 1.4734 47 1 2.0027 -2.9054 3.5443 48 1 4.0567 -1.2081 3.6666 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674894475.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:23 Heat of formation + Delta-G solvation = 23.405257 kcal Electronic energy + Delta-G solvation = -29731.542171 eV Core-core repulsion = 25631.084638 eV Total energy + Delta-G solvation = -4100.457533 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.34866 -39.84305 -38.89039 -37.28137 -34.74913 -34.41219 -33.82371 -31.27183 -31.08663 -30.11906 -29.56125 -28.10872 -26.77364 -25.14036 -24.65399 -23.80850 -21.50928 -21.07860 -20.54690 -19.81164 -18.94493 -17.90282 -17.66879 -17.18122 -16.69345 -15.94679 -15.64359 -15.05346 -14.90046 -14.83762 -14.46596 -14.27432 -14.12569 -13.82512 -13.67028 -13.61610 -13.55545 -13.05079 -12.87662 -12.79824 -12.70306 -12.52279 -12.31911 -12.11386 -11.89971 -11.81953 -11.50106 -11.29379 -11.19742 -10.94049 -10.84053 -10.68101 -10.35341 -10.23885 -10.14206 -9.50358 -9.40162 -9.08576 -8.61879 -8.52477 -8.01755 -7.91573 -6.42889 -3.83905 1.81236 2.28071 2.48570 2.86691 3.15507 3.16913 3.26389 3.32874 3.86746 3.91583 4.21291 4.24304 4.48902 4.61052 4.65809 4.72351 4.90023 4.90685 5.04580 5.13384 5.16141 5.23803 5.27786 5.40672 5.41977 5.47644 5.52329 5.58628 5.70266 5.73024 5.74804 5.81755 5.87978 5.94691 5.96804 6.08021 6.24276 6.36412 6.48088 6.61410 6.90096 7.14541 7.25570 7.46862 7.54002 7.69900 8.04552 8.11898 8.59486 9.16570 9.52684 10.03643 10.74830 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009496 B = 0.003102 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2947.852539 B = 9023.943751 C =10968.982205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.141 3.859 3 H 0.132 0.868 4 C 0.501 3.499 5 O -0.531 6.531 6 N -0.706 5.706 7 C 0.130 3.870 8 C 0.065 3.935 9 H 0.089 0.911 10 C -0.185 4.185 11 N -0.512 5.512 12 C 0.021 3.979 13 C 0.041 3.959 14 C 0.444 3.556 15 O -0.580 6.580 16 N -0.563 5.563 17 C -0.299 4.299 18 H 0.104 0.896 19 C 0.022 3.978 20 N -0.900 5.900 21 Si 0.929 3.071 22 H -0.268 1.268 23 H -0.281 1.281 24 H -0.282 1.282 25 N -0.352 5.352 26 C 0.065 3.935 27 C -0.277 4.277 28 C 0.044 3.956 29 N -0.286 5.286 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.412 0.588 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.098 0.902 41 H 0.018 0.982 42 H 0.087 0.913 43 H 0.052 0.948 44 H 0.391 0.609 45 H 0.271 0.729 46 H 0.168 0.832 47 H 0.145 0.855 48 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.858 -13.770 6.317 21.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.035 3.965 3 H 0.149 0.851 4 C 0.284 3.716 5 O -0.407 6.407 6 N -0.359 5.359 7 C 0.006 3.994 8 C -0.045 4.045 9 H 0.107 0.893 10 C -0.245 4.245 11 N -0.236 5.236 12 C -0.126 4.126 13 C -0.090 4.090 14 C 0.229 3.771 15 O -0.465 6.465 16 N -0.199 5.199 17 C -0.428 4.428 18 H 0.121 0.879 19 C -0.179 4.179 20 N -0.542 5.542 21 Si 0.756 3.244 22 H -0.192 1.192 23 H -0.207 1.207 24 H -0.208 1.208 25 N -0.134 5.134 26 C -0.080 4.080 27 C -0.306 4.306 28 C -0.143 4.143 29 N -0.106 5.106 30 H 0.110 0.890 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.249 0.751 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.117 0.883 41 H 0.037 0.963 42 H 0.105 0.895 43 H 0.070 0.930 44 H 0.224 0.776 45 H 0.081 0.919 46 H 0.185 0.815 47 H 0.163 0.837 48 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -14.405 -12.651 6.323 20.187 hybrid contribution 0.537 -0.272 -0.587 0.841 sum -13.868 -12.923 5.736 19.805 Atomic orbital electron populations 1.22150 0.90588 1.04008 1.04975 1.21109 0.96061 0.98137 0.81222 0.85051 1.20635 0.81083 0.85039 0.84832 1.90751 1.36951 1.26386 1.86564 1.45745 1.53215 1.32469 1.04481 1.21428 0.99357 0.95644 0.83008 1.22046 1.00443 0.88572 0.93413 0.89284 1.22403 1.02330 1.01358 0.98382 1.61805 1.05405 1.06565 1.49814 1.22556 0.96291 1.02354 0.91446 1.21945 0.89314 0.97331 1.00429 1.19697 0.83799 0.88740 0.84841 1.90465 1.45337 1.58066 1.52588 1.41880 1.07311 1.10426 1.60324 1.19726 0.94455 0.84985 1.43654 0.87858 1.25266 0.95255 1.00177 0.97230 1.69616 1.01279 1.35527 1.47738 0.85814 0.78634 0.82075 0.77905 1.19211 1.20706 1.20781 1.48206 1.19472 1.24513 1.21224 1.22376 0.99794 0.90938 0.94933 1.21436 0.99325 1.06331 1.03552 1.23874 0.99173 0.94055 0.97185 1.77441 1.01935 1.24183 1.07085 0.89015 0.91072 0.90119 0.75089 0.91424 0.90969 0.91882 0.91795 0.91605 0.92324 0.88349 0.96339 0.89517 0.93037 0.77553 0.91887 0.81470 0.83678 0.80105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 8.72 37.16 0.32 -0.80 16 2 C 0.14 1.62 3.73 -69.08 -0.26 1.36 16 3 H 0.13 1.54 8.14 -51.93 -0.42 1.12 16 4 C 0.50 6.85 7.22 -10.99 -0.08 6.77 16 5 O -0.53 -9.42 16.42 5.56 0.09 -9.33 16 6 N -0.71 -8.36 5.31 -60.29 -0.32 -8.68 16 7 C 0.13 1.52 4.94 -4.04 -0.02 1.50 16 8 C 0.06 0.69 2.47 -67.71 -0.17 0.52 16 9 H 0.09 0.81 7.93 -51.93 -0.41 0.40 16 10 C -0.19 -1.80 8.41 37.16 0.31 -1.49 16 11 N -0.51 -7.22 3.82 -236.33 -0.90 -8.12 16 12 C 0.02 0.30 8.90 60.06 0.53 0.83 16 13 C 0.04 0.69 4.31 -4.98 -0.02 0.67 16 14 C 0.44 10.04 7.52 -10.99 -0.08 9.96 16 15 O -0.58 -14.69 13.88 5.55 0.08 -14.61 16 16 N -0.56 -14.09 5.29 -10.96 -0.06 -14.15 16 17 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 18 H 0.10 2.98 7.16 -52.48 -0.38 2.60 16 19 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 20 N -0.90 -24.62 13.05 55.50 0.72 -23.89 16 21 Si 0.93 21.06 29.55 -169.99 -5.02 16.03 16 22 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 N -0.35 -4.71 3.02 -55.99 -0.17 -4.88 16 26 C 0.07 0.73 10.58 -17.22 -0.18 0.55 16 27 C -0.28 -3.05 10.80 -40.01 -0.43 -3.48 16 28 C 0.04 0.55 12.03 -17.37 -0.21 0.34 16 29 N -0.29 -4.45 12.58 30.62 0.39 -4.06 16 30 H 0.09 0.51 7.56 -51.93 -0.39 0.12 16 31 H 0.07 0.44 7.15 -51.93 -0.37 0.07 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.41 4.47 7.49 -40.82 -0.31 4.16 16 34 H 0.07 0.93 6.65 -51.93 -0.35 0.58 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.62 6.92 -51.93 -0.36 0.26 16 38 H 0.06 0.70 6.54 -51.93 -0.34 0.36 16 39 H 0.06 0.67 7.98 -51.93 -0.41 0.26 16 40 H 0.10 1.75 5.92 -51.93 -0.31 1.44 16 41 H 0.02 0.24 6.96 -51.93 -0.36 -0.12 16 42 H 0.09 1.43 6.30 -51.93 -0.33 1.10 16 43 H 0.05 0.81 6.81 -51.93 -0.35 0.45 16 44 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 45 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 46 H 0.17 1.31 7.26 -52.48 -0.38 0.93 16 47 H 0.15 1.19 8.06 -52.48 -0.42 0.77 16 48 H 0.18 1.67 8.06 -52.49 -0.42 1.24 16 LS Contribution 392.59 15.07 5.92 5.92 Total: -1.00 -35.35 392.59 -6.84 -42.19 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: -7.04 Total: 14.74 kcal Atomic # 6 Polarization: 9.36 SS G_CDS: -0.52 Total: 8.84 kcal Atomic # 7 Polarization: -63.45 SS G_CDS: -0.34 Total: -63.79 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: 0.17 Total: -23.94 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.35 -6.84 -42.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674894475.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.599 kcal (2) G-P(sol) polarization free energy of solvation -35.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds