Wall clock time and date at job start Tue Mar 31 2020 20:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47709 * 2 1 4 4 C 1.50699 * 109.47260 * 239.99683 * 2 1 3 5 5 O 1.21280 * 120.00100 * 239.72619 * 4 2 1 6 6 N 1.34774 * 119.99796 * 60.00398 * 4 2 1 7 7 C 1.46504 * 120.00170 * 179.72162 * 6 4 2 8 8 C 1.53002 * 109.47316 * 175.18651 * 7 6 4 9 9 H 1.08997 * 109.46988 * 295.32492 * 8 7 6 10 10 C 1.52996 * 109.47160 * 175.31815 * 8 7 6 11 11 N 1.46902 * 109.46908 * 55.31891 * 8 7 6 12 12 C 1.46895 * 111.00333 * 192.49267 * 11 8 7 13 13 C 1.46906 * 110.99784 * 68.53730 * 11 8 7 14 14 C 1.50695 * 109.47062 * 189.99661 * 13 11 8 15 15 O 1.21291 * 120.00344 * 0.02562 * 14 13 11 16 16 N 1.34780 * 120.00007 * 179.97438 * 14 13 11 17 17 C 1.37097 * 120.00260 * 179.97438 * 16 14 13 18 18 H 1.08004 * 119.99846 * 0.02562 * 17 16 14 19 19 C 1.38946 * 119.99972 * 180.02562 * 17 16 14 20 20 N 1.31404 * 120.00195 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99782 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47042 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46976 * 120.00008 * 21 19 17 24 24 H 1.48495 * 109.47106 * 239.99739 * 21 19 17 25 25 N 1.46506 * 109.47082 * 120.00032 * 2 1 3 26 26 C 1.34952 * 126.03509 * 34.71455 * 25 2 1 27 27 C 1.35315 * 107.74136 * 179.84270 * 26 25 2 28 28 C 1.39868 * 107.92389 * 0.42241 * 27 26 25 29 29 N 1.30836 * 108.20020 * 359.73827 * 28 27 26 30 30 H 1.09002 * 109.46648 * 59.99952 * 1 2 3 31 31 H 1.09001 * 109.47273 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47240 * 300.00193 * 1 2 3 33 33 H 0.97002 * 120.00253 * 359.72767 * 6 4 2 34 34 H 1.08995 * 109.47330 * 295.19142 * 7 6 4 35 35 H 1.08999 * 109.46605 * 55.19120 * 7 6 4 36 36 H 1.08997 * 109.47051 * 60.00457 * 10 8 7 37 37 H 1.08999 * 109.47394 * 180.02562 * 10 8 7 38 38 H 1.08998 * 109.47397 * 300.00661 * 10 8 7 39 39 H 1.09005 * 109.46918 * 53.76410 * 12 11 8 40 40 H 1.08998 * 109.47335 * 173.76284 * 12 11 8 41 41 H 1.08997 * 109.47112 * 293.76699 * 12 11 8 42 42 H 1.08997 * 109.47293 * 310.00531 * 13 11 8 43 43 H 1.09004 * 109.46638 * 70.00458 * 13 11 8 44 44 H 0.97002 * 119.99670 * 0.02562 * 16 14 13 45 45 H 0.97002 * 120.00315 * 179.97438 * 20 19 17 46 46 H 1.08003 * 126.12450 * 0.02562 * 26 25 2 47 47 H 1.08005 * 126.03388 * 180.16035 * 27 26 25 48 48 H 1.07998 * 125.89734 * 179.71997 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7337 -1.6936 -1.1191 6 7 1.7068 -0.2500 -2.4545 7 6 2.2002 -0.9371 -3.6507 8 6 1.5930 -0.2903 -4.8973 9 1 0.5136 -0.4419 -4.8961 10 6 2.1967 -0.9300 -6.1492 11 7 1.8852 1.1494 -4.8936 12 6 1.0807 1.8525 -5.9017 13 6 3.3188 1.3961 -5.0985 14 6 3.6192 2.8511 -4.8460 15 8 2.7270 3.6080 -4.5264 16 7 4.8796 3.3111 -4.9744 17 6 5.1528 4.6349 -4.7453 18 1 4.3582 5.3090 -4.4614 19 6 6.4520 5.1092 -4.8782 20 7 7.4189 4.2889 -5.2230 21 14 6.8245 6.9128 -4.5652 22 1 5.5727 7.6191 -4.1916 23 1 7.8078 7.0304 -3.4586 24 1 7.3891 7.5224 -5.7959 25 7 2.0183 -0.6906 1.1962 26 6 1.4372 -1.7526 1.7926 27 6 2.1965 -2.0928 2.8598 28 6 3.2734 -1.2025 2.9231 29 7 3.1675 -0.3615 1.9264 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.1459 0.5364 -2.5436 34 1 3.2864 -0.8583 -3.6929 35 1 1.9133 -1.9879 -3.6103 36 1 1.9798 -1.9981 -6.1519 37 1 1.7645 -0.4689 -7.0373 38 1 3.2761 -0.7784 -6.1502 39 1 0.0263 1.6203 -5.7516 40 1 1.2335 2.9272 -5.8035 41 1 1.3851 1.5316 -6.8978 42 1 3.8957 0.7808 -4.4081 43 1 3.5882 1.1421 -6.1237 44 1 5.5932 2.7057 -5.2297 45 1 8.3259 4.6200 -5.3161 46 1 0.5303 -2.2448 1.4734 47 1 2.0027 -2.9054 3.5443 48 1 4.0567 -1.2081 3.6666 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674894475.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:22 Heat of formation + Delta-G solvation = -4.139811 kcal Electronic energy + Delta-G solvation = -29732.736615 eV Core-core repulsion = 25631.084638 eV Total energy + Delta-G solvation = -4101.651977 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.25940 -40.96139 -40.32416 -38.73558 -36.00774 -35.68483 -35.26388 -33.27803 -32.11392 -31.02401 -30.37408 -29.55172 -27.64951 -26.75436 -25.71399 -24.99639 -22.47830 -21.97535 -21.86382 -20.85981 -20.44784 -19.74327 -18.67901 -18.18958 -18.07885 -16.94913 -16.92144 -16.57529 -16.24160 -16.05727 -15.78795 -15.62939 -15.32041 -15.13405 -14.95789 -14.65855 -14.43386 -14.10235 -13.94711 -13.80486 -13.65612 -13.49585 -13.43051 -13.28654 -13.05336 -13.02614 -12.83622 -12.61533 -12.46018 -12.40056 -12.17266 -12.12670 -11.80181 -11.61176 -11.45601 -11.21387 -10.37886 -10.27892 -10.11721 -10.00353 -9.50932 -9.20292 -8.47170 -5.95582 0.91254 1.35121 1.40107 1.42490 1.44915 1.54122 1.99164 2.05668 2.21148 2.28136 2.77090 3.20034 3.38477 3.44331 3.67484 3.75100 3.81632 3.97833 4.02433 4.14391 4.20670 4.28804 4.35975 4.48714 4.56337 4.57097 4.62910 4.64810 4.68601 4.72879 4.75118 4.88638 4.89317 5.00276 5.06995 5.15979 5.23998 5.29169 5.38277 5.41037 5.74295 5.86776 6.05924 6.08458 6.20392 6.48200 6.59571 6.78617 7.10812 7.12842 7.56681 8.11600 8.70678 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009496 B = 0.003102 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2947.852539 B = 9023.943751 C =10968.982205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.138 3.862 3 H 0.120 0.880 4 C 0.500 3.500 5 O -0.576 6.576 6 N -0.696 5.696 7 C 0.129 3.871 8 C 0.075 3.925 9 H 0.119 0.881 10 C -0.183 4.183 11 N -0.522 5.522 12 C 0.026 3.974 13 C 0.057 3.943 14 C 0.444 3.556 15 O -0.607 6.607 16 N -0.579 5.579 17 C -0.327 4.327 18 H 0.082 0.918 19 C -0.016 4.016 20 N -0.924 5.924 21 Si 0.991 3.009 22 H -0.270 1.270 23 H -0.275 1.275 24 H -0.271 1.271 25 N -0.364 5.364 26 C 0.063 3.937 27 C -0.284 4.284 28 C 0.036 3.964 29 N -0.348 5.348 30 H 0.108 0.892 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.419 0.581 34 H 0.044 0.956 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.052 0.948 39 H 0.090 0.910 40 H 0.055 0.945 41 H 0.029 0.971 42 H 0.091 0.909 43 H 0.068 0.932 44 H 0.392 0.608 45 H 0.276 0.724 46 H 0.201 0.799 47 H 0.173 0.827 48 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.801 -15.010 6.138 23.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.032 3.968 3 H 0.137 0.863 4 C 0.284 3.716 5 O -0.456 6.456 6 N -0.348 5.348 7 C 0.005 3.995 8 C -0.034 4.034 9 H 0.137 0.863 10 C -0.242 4.242 11 N -0.246 5.246 12 C -0.122 4.122 13 C -0.074 4.074 14 C 0.231 3.769 15 O -0.493 6.493 16 N -0.216 5.216 17 C -0.457 4.457 18 H 0.100 0.900 19 C -0.216 4.216 20 N -0.565 5.565 21 Si 0.815 3.185 22 H -0.195 1.195 23 H -0.200 1.200 24 H -0.196 1.196 25 N -0.146 5.146 26 C -0.083 4.083 27 C -0.313 4.313 28 C -0.150 4.150 29 N -0.169 5.169 30 H 0.127 0.873 31 H 0.103 0.897 32 H 0.108 0.892 33 H 0.256 0.744 34 H 0.062 0.938 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.108 0.892 40 H 0.074 0.926 41 H 0.047 0.953 42 H 0.109 0.891 43 H 0.086 0.914 44 H 0.226 0.774 45 H 0.085 0.915 46 H 0.218 0.782 47 H 0.191 0.809 48 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -16.375 -13.892 6.124 22.330 hybrid contribution 1.067 0.042 -0.526 1.190 sum -15.308 -13.850 5.599 21.390 Atomic orbital electron populations 1.22180 0.86945 1.05330 1.06266 1.21289 0.98743 0.96877 0.79911 0.86252 1.21055 0.80266 0.84462 0.85792 1.90721 1.39059 1.28576 1.87240 1.45736 1.52563 1.32298 1.04225 1.21476 0.98074 0.96577 0.83370 1.22096 1.02080 0.85935 0.93249 0.86350 1.22381 1.01374 1.02744 0.97719 1.61732 1.03455 1.09111 1.50275 1.22450 0.98060 0.99716 0.91930 1.21721 0.91603 0.92715 1.01380 1.20738 0.82563 0.91010 0.82576 1.90448 1.45961 1.59741 1.53136 1.41989 1.08314 1.09823 1.61523 1.19687 0.94542 0.86143 1.45329 0.90040 1.26045 0.94699 1.04191 0.96619 1.69685 1.01615 1.37110 1.48112 0.84888 0.78222 0.77169 0.78189 1.19468 1.20009 1.19576 1.48390 1.19245 1.25379 1.21592 1.23027 1.00603 0.90108 0.94536 1.21856 0.98653 1.06695 1.04056 1.24412 1.00062 0.93674 0.96822 1.77355 1.04029 1.26509 1.08964 0.87304 0.89673 0.89203 0.74357 0.93805 0.89648 0.89750 0.91298 0.92918 0.89162 0.92581 0.95275 0.89133 0.91403 0.77436 0.91455 0.78208 0.80928 0.77976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 8.72 71.98 0.63 -1.16 16 2 C 0.14 3.12 3.73 44.24 0.17 3.28 16 3 H 0.12 2.91 8.14 -2.39 -0.02 2.90 16 4 C 0.50 13.49 7.22 87.66 0.63 14.13 16 5 O -0.58 -20.62 16.42 -3.03 -0.05 -20.67 16 6 N -0.70 -15.66 5.31 -463.06 -2.46 -18.12 16 7 C 0.13 2.81 4.94 86.38 0.43 3.24 16 8 C 0.07 1.38 2.47 44.91 0.11 1.49 16 9 H 0.12 1.61 7.93 -2.39 -0.02 1.59 16 10 C -0.18 -3.02 8.41 71.98 0.61 -2.41 16 11 N -0.52 -13.85 3.82 -901.62 -3.45 -17.30 16 12 C 0.03 0.68 8.90 127.69 1.14 1.82 16 13 C 0.06 1.89 4.31 85.55 0.37 2.26 16 14 C 0.44 20.50 7.52 87.65 0.66 21.16 16 15 O -0.61 -31.54 13.88 -3.06 -0.04 -31.59 16 16 N -0.58 -29.88 5.29 -306.99 -1.62 -31.50 16 17 C -0.33 -18.62 9.68 84.04 0.81 -17.81 16 18 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 19 C -0.02 -0.88 5.50 84.93 0.47 -0.42 16 20 N -0.92 -51.02 13.05 21.66 0.28 -50.74 16 21 Si 0.99 43.55 29.55 68.60 2.03 45.58 16 22 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 23 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 24 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 25 N -0.36 -9.67 3.02 -331.06 -1.00 -10.67 16 26 C 0.06 1.31 10.58 83.54 0.88 2.20 16 27 C -0.28 -5.86 10.80 21.99 0.24 -5.63 16 28 C 0.04 0.90 12.03 85.24 1.02 1.92 16 29 N -0.35 -11.09 12.58 -57.03 -0.72 -11.80 16 30 H 0.11 0.93 7.56 -2.39 -0.02 0.91 16 31 H 0.08 0.80 7.15 -2.39 -0.02 0.78 16 32 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.42 8.39 7.49 -92.71 -0.69 7.69 16 34 H 0.04 1.18 6.65 -2.39 -0.02 1.17 16 35 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.07 1.10 6.92 -2.39 -0.02 1.08 16 38 H 0.05 1.02 6.54 -2.39 -0.02 1.00 16 39 H 0.09 1.77 7.98 -2.38 -0.02 1.75 16 40 H 0.06 1.98 5.92 -2.39 -0.01 1.97 16 41 H 0.03 0.69 6.96 -2.39 -0.02 0.67 16 42 H 0.09 2.98 6.30 -2.39 -0.02 2.96 16 43 H 0.07 2.05 6.81 -2.39 -0.02 2.04 16 44 H 0.39 19.68 7.90 -92.71 -0.73 18.95 16 45 H 0.28 14.29 8.31 -92.71 -0.77 13.52 16 46 H 0.20 2.58 7.26 -2.91 -0.02 2.55 16 47 H 0.17 2.42 8.06 -2.91 -0.02 2.40 16 48 H 0.20 3.69 8.06 -2.91 -0.02 3.66 16 Total: -1.00 -80.11 392.59 0.71 -79.40 By element: Atomic # 1 Polarization: 43.76 SS G_CDS: -0.43 Total: 43.34 kcal Atomic # 6 Polarization: 15.91 SS G_CDS: 8.16 Total: 24.07 kcal Atomic # 7 Polarization: -131.16 SS G_CDS: -8.96 Total: -140.12 kcal Atomic # 8 Polarization: -52.16 SS G_CDS: -0.09 Total: -52.26 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -80.11 0.71 -79.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674894475.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.256 kcal (2) G-P(sol) polarization free energy of solvation -80.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds