Wall clock time and date at job start Tue Mar 31 2020 20:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47191 * 2 1 4 4 C 1.53002 * 109.46820 * 120.00001 * 2 1 3 5 5 N 1.46495 * 109.47343 * 175.31503 * 4 2 1 6 6 C 1.34775 * 120.00289 * 175.18734 * 5 4 2 7 7 O 1.21282 * 119.99795 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00055 * 180.02562 * 6 5 4 9 9 H 1.08995 * 109.47072 * 60.00414 * 8 6 5 10 10 C 1.52997 * 109.47550 * 300.00161 * 8 6 5 11 11 N 1.46504 * 109.47036 * 180.02562 * 8 6 5 12 12 C 1.34948 * 126.03881 * 85.00165 * 11 8 6 13 13 C 1.35317 * 107.74852 * 179.97438 * 12 11 8 14 14 C 1.39870 * 107.91764 * 0.02562 * 13 12 11 15 15 N 1.30837 * 108.20350 * 359.73700 * 14 13 12 16 16 N 1.46899 * 109.47157 * 239.99506 * 2 1 3 17 17 C 1.46900 * 110.99710 * 72.50096 * 16 2 1 18 18 C 1.46892 * 111.00629 * 308.54749 * 16 2 1 19 19 C 1.50699 * 109.47589 * 189.99984 * 18 16 2 20 20 O 1.21297 * 119.99471 * 359.97438 * 19 18 16 21 21 N 1.34768 * 120.00382 * 179.97438 * 19 18 16 22 22 C 1.37094 * 120.00217 * 179.97438 * 21 19 18 23 23 H 1.07999 * 119.99928 * 359.97438 * 22 21 19 24 24 C 1.38956 * 120.00137 * 179.97438 * 22 21 19 25 25 N 1.31408 * 119.99929 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00026 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.46657 * 90.00216 * 26 24 22 28 28 H 1.48501 * 109.46969 * 210.00013 * 26 24 22 29 29 H 1.48499 * 109.47276 * 330.00172 * 26 24 22 30 30 H 1.08998 * 109.46913 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47394 * 300.00186 * 1 2 3 32 32 H 1.09005 * 109.46461 * 59.99848 * 1 2 3 33 33 H 1.09003 * 109.46990 * 55.31702 * 4 2 1 34 34 H 1.09001 * 109.47199 * 295.31771 * 4 2 1 35 35 H 0.97000 * 119.99999 * 355.19381 * 5 4 2 36 36 H 1.08997 * 109.47269 * 179.97438 * 10 8 6 37 37 H 1.09001 * 109.47089 * 300.00644 * 10 8 6 38 38 H 1.08999 * 109.47020 * 59.99781 * 10 8 6 39 39 H 1.08004 * 126.12423 * 359.97438 * 12 11 8 40 40 H 1.08001 * 126.03679 * 179.97438 * 13 12 11 41 41 H 1.07994 * 125.89674 * 180.02562 * 14 13 12 42 42 H 1.09004 * 109.47380 * 53.75652 * 17 16 2 43 43 H 1.09003 * 109.47571 * 173.75869 * 17 16 2 44 44 H 1.09000 * 109.47389 * 293.75824 * 17 16 2 45 45 H 1.09002 * 109.46608 * 309.99981 * 18 16 2 46 46 H 1.08993 * 109.47405 * 69.99321 * 18 16 2 47 47 H 0.97004 * 119.99958 * 359.97438 * 21 19 18 48 48 H 0.96997 * 120.00423 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5005 -0.8198 1.1943 6 6 4.1811 -1.3332 2.2382 7 8 3.5843 -1.7140 3.2229 8 6 5.6837 -1.4340 2.1818 9 1 6.1100 -0.4391 2.0533 10 6 6.0917 -2.3199 1.0031 11 7 6.1808 -2.0214 3.4285 12 6 6.2782 -3.3393 3.7017 13 6 6.7816 -3.4654 4.9514 14 6 6.9989 -2.1805 5.4595 15 7 6.6440 -1.3142 4.5455 16 7 2.0197 -0.6926 -1.1994 17 6 1.8064 0.1232 -2.4023 18 6 1.3895 -2.0120 -1.3396 19 6 2.0860 -2.7884 -2.4274 20 8 3.0157 -2.2911 -3.0272 21 7 1.6760 -4.0351 -2.7338 22 6 2.3093 -4.7411 -3.7238 23 1 3.1365 -4.2980 -4.2584 24 6 1.8869 -6.0267 -4.0393 25 7 0.8800 -6.5656 -3.3891 26 14 2.7493 -6.9884 -5.3887 27 1 3.8692 -7.7678 -4.8025 28 1 1.7832 -7.9160 -6.0303 29 1 3.2810 -6.0461 -6.4058 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3632 0.5139 -0.8900 33 1 1.6097 -1.7219 1.2922 34 1 1.7467 -0.1613 2.1373 35 1 3.9779 -0.5155 0.4066 36 1 7.1784 -2.3924 0.9621 37 1 5.6653 -3.3148 1.1316 38 1 5.7218 -1.8833 0.0754 39 1 6.0034 -4.1485 3.0412 40 1 6.9798 -4.3941 5.4658 41 1 7.3957 -1.9444 6.4357 42 1 2.2480 1.1089 -2.2559 43 1 2.2757 -0.3618 -3.2582 44 1 0.7370 0.2279 -2.5854 45 1 1.4695 -2.5548 -0.3977 46 1 0.3383 -1.8870 -1.5986 47 1 0.9328 -4.4329 -2.2539 48 1 0.5849 -7.4629 -3.6096 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674894476.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:25 Heat of formation + Delta-G solvation = 22.396576 kcal Electronic energy + Delta-G solvation = -29882.102565 eV Core-core repulsion = 25781.601292 eV Total energy + Delta-G solvation = -4100.501273 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.33227 -39.84304 -38.90457 -37.30494 -34.70057 -34.41806 -33.85462 -31.31207 -31.09120 -30.10065 -29.49569 -28.13241 -26.74750 -25.12822 -24.63464 -23.81567 -21.49641 -21.06698 -20.55962 -19.77784 -18.96864 -17.92644 -17.66487 -17.16067 -16.71473 -15.97118 -15.51129 -15.17086 -14.88447 -14.84959 -14.41674 -14.32034 -14.05378 -13.91182 -13.63102 -13.60532 -13.55745 -12.98538 -12.82438 -12.77374 -12.57017 -12.44132 -12.32427 -12.13667 -11.90703 -11.74654 -11.53628 -11.31101 -11.21265 -10.95048 -10.85086 -10.72761 -10.44470 -10.27352 -10.13052 -9.53346 -9.38785 -9.08485 -8.60148 -8.55076 -8.05361 -7.94542 -6.47075 -3.88255 1.82379 2.28823 2.49377 2.86970 3.13117 3.17936 3.22572 3.27453 3.83268 3.89353 4.17654 4.31900 4.54556 4.60604 4.63874 4.83836 4.90418 4.94683 5.02852 5.14610 5.20589 5.32804 5.39864 5.40574 5.42546 5.52693 5.53227 5.68941 5.72528 5.73330 5.80908 5.87032 5.88391 5.92366 6.00747 6.07224 6.20717 6.36365 6.47056 6.61931 6.91829 7.13137 7.23850 7.47071 7.49568 7.68453 8.00179 8.12182 8.55332 9.12301 9.48486 9.99563 10.70500 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009602 B = 0.003196 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2915.431615 B = 8758.156193 C =10771.198995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.064 3.936 3 H 0.089 0.911 4 C 0.130 3.870 5 N -0.706 5.706 6 C 0.500 3.500 7 O -0.531 6.531 8 C 0.145 3.855 9 H 0.126 0.874 10 C -0.163 4.163 11 N -0.353 5.353 12 C 0.072 3.928 13 C -0.278 4.278 14 C 0.045 3.955 15 N -0.296 5.296 16 N -0.512 5.512 17 C 0.021 3.979 18 C 0.041 3.959 19 C 0.444 3.556 20 O -0.580 6.580 21 N -0.563 5.563 22 C -0.300 4.300 23 H 0.103 0.897 24 C 0.023 3.977 25 N -0.900 5.900 26 Si 0.929 3.071 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.270 1.270 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.412 0.588 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.097 0.903 39 H 0.171 0.829 40 H 0.146 0.854 41 H 0.181 0.819 42 H 0.058 0.942 43 H 0.098 0.902 44 H 0.018 0.982 45 H 0.086 0.914 46 H 0.051 0.949 47 H 0.391 0.609 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.770 10.611 10.886 15.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.045 4.045 3 H 0.107 0.893 4 C 0.006 3.994 5 N -0.359 5.359 6 C 0.283 3.717 7 O -0.407 6.407 8 C 0.038 3.962 9 H 0.144 0.856 10 C -0.221 4.221 11 N -0.135 5.135 12 C -0.074 4.074 13 C -0.308 4.308 14 C -0.142 4.142 15 N -0.116 5.116 16 N -0.235 5.235 17 C -0.127 4.127 18 C -0.090 4.090 19 C 0.229 3.771 20 O -0.464 6.464 21 N -0.199 5.199 22 C -0.429 4.429 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.542 5.542 26 Si 0.756 3.244 27 H -0.204 1.204 28 H -0.209 1.209 29 H -0.194 1.194 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.249 0.751 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.116 0.884 39 H 0.188 0.812 40 H 0.164 0.836 41 H 0.198 0.802 42 H 0.077 0.923 43 H 0.117 0.883 44 H 0.037 0.963 45 H 0.105 0.895 46 H 0.069 0.931 47 H 0.224 0.776 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.220 11.706 10.780 16.748 hybrid contribution -0.915 -1.522 -0.567 1.864 sum 4.305 10.185 10.213 15.052 Atomic orbital electron populations 1.22402 0.96386 1.03069 1.02596 1.22049 0.93655 0.98343 0.90466 0.89266 1.21424 0.79840 1.01083 0.97061 1.45743 1.07741 1.63435 1.19002 1.20669 0.89438 0.78187 0.83366 1.90751 1.70010 1.47827 1.32101 1.21101 0.92017 1.00945 0.82102 0.85625 1.22193 1.03452 1.00498 0.95948 1.48204 1.48773 1.04182 1.12312 1.22477 0.99583 0.87227 0.98082 1.21447 1.14243 0.98713 0.96366 1.23824 0.99943 0.91433 0.98967 1.77305 1.19221 1.20846 0.94268 1.61807 1.57124 1.02266 1.02349 1.22560 0.98786 0.97108 0.94223 1.21942 0.96487 0.90708 0.99893 1.19701 0.87198 0.83252 0.86922 1.90469 1.31256 1.69438 1.55275 1.41873 1.31618 1.12721 1.33718 1.19671 1.14665 0.96285 1.12287 0.87916 1.25263 0.96619 0.97164 0.98831 1.69605 1.26325 1.16592 1.41633 0.85877 0.78733 0.79263 0.80536 1.20373 1.20932 1.19424 0.91616 0.91868 0.91802 0.91412 0.90994 0.75087 0.90248 0.90713 0.88400 0.81200 0.83608 0.80191 0.92304 0.88346 0.96339 0.89540 0.93064 0.77557 0.91819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.80 8.42 37.16 0.31 -1.49 16 2 C 0.06 0.68 2.47 -67.71 -0.17 0.52 16 3 H 0.09 0.84 7.93 -51.93 -0.41 0.43 16 4 C 0.13 1.52 4.94 -4.04 -0.02 1.50 16 5 N -0.71 -8.34 5.31 -60.29 -0.32 -8.66 16 6 C 0.50 6.83 7.22 -10.99 -0.08 6.75 16 7 O -0.53 -9.42 16.41 5.56 0.09 -9.33 16 8 C 0.14 1.66 3.73 -69.08 -0.26 1.40 16 9 H 0.13 1.22 8.14 -51.93 -0.42 0.80 16 10 C -0.16 -1.61 8.73 37.16 0.32 -1.28 16 11 N -0.35 -4.73 3.02 -55.99 -0.17 -4.90 16 12 C 0.07 0.90 10.57 -17.22 -0.18 0.72 16 13 C -0.28 -3.22 10.80 -40.01 -0.43 -3.65 16 14 C 0.04 0.54 12.03 -17.36 -0.21 0.33 16 15 N -0.30 -4.26 12.58 30.62 0.39 -3.87 16 16 N -0.51 -7.02 3.82 -236.34 -0.90 -7.92 16 17 C 0.02 0.29 8.90 60.06 0.53 0.82 16 18 C 0.04 0.66 4.31 -4.98 -0.02 0.64 16 19 C 0.44 9.64 7.52 -10.99 -0.08 9.55 16 20 O -0.58 -14.14 13.88 5.54 0.08 -14.07 16 21 N -0.56 -13.56 5.29 -10.96 -0.06 -13.62 16 22 C -0.30 -7.99 9.68 -14.93 -0.14 -8.13 16 23 H 0.10 2.87 7.16 -52.49 -0.38 2.49 16 24 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 25 N -0.90 -23.92 13.05 55.50 0.72 -23.19 16 26 Si 0.93 20.44 29.55 -169.99 -5.02 15.41 16 27 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 28 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 29 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 30 H 0.06 0.69 6.54 -51.93 -0.34 0.35 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.62 6.92 -51.93 -0.36 0.26 16 33 H 0.07 0.89 6.65 -51.93 -0.35 0.55 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.41 4.45 7.49 -40.82 -0.31 4.14 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.80 7.15 -51.93 -0.37 0.43 16 38 H 0.10 0.95 7.56 -51.93 -0.39 0.56 16 39 H 0.17 1.76 7.26 -52.48 -0.38 1.38 16 40 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 41 H 0.18 1.51 8.06 -52.49 -0.42 1.09 16 42 H 0.06 0.67 7.98 -51.93 -0.41 0.26 16 43 H 0.10 1.72 5.92 -51.93 -0.31 1.41 16 44 H 0.02 0.24 6.96 -51.93 -0.36 -0.12 16 45 H 0.09 1.34 6.30 -51.93 -0.33 1.02 16 46 H 0.05 0.78 6.81 -51.93 -0.35 0.42 16 47 H 0.39 9.18 7.90 -40.82 -0.32 8.85 16 48 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 392.59 15.07 5.92 5.92 Total: -1.00 -33.62 392.59 -6.84 -40.47 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: -7.04 Total: 15.59 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: -0.52 Total: 8.17 kcal Atomic # 7 Polarization: -61.82 SS G_CDS: -0.34 Total: -62.16 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: 0.17 Total: -23.39 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.62 -6.84 -40.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674894476.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.862 kcal (2) G-P(sol) polarization free energy of solvation -33.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds