Wall clock time and date at job start Tue Mar 31 2020 20:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47191 * 2 1 4 4 C 1.53002 * 109.46820 * 120.00001 * 2 1 3 5 5 N 1.46495 * 109.47343 * 175.31503 * 4 2 1 6 6 C 1.34775 * 120.00289 * 175.18734 * 5 4 2 7 7 O 1.21282 * 119.99795 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00055 * 180.02562 * 6 5 4 9 9 H 1.08995 * 109.47072 * 60.00414 * 8 6 5 10 10 C 1.52997 * 109.47550 * 300.00161 * 8 6 5 11 11 N 1.46504 * 109.47036 * 180.02562 * 8 6 5 12 12 C 1.34948 * 126.03881 * 85.00165 * 11 8 6 13 13 C 1.35317 * 107.74852 * 179.97438 * 12 11 8 14 14 C 1.39870 * 107.91764 * 0.02562 * 13 12 11 15 15 N 1.30837 * 108.20350 * 359.73700 * 14 13 12 16 16 N 1.46899 * 109.47157 * 239.99506 * 2 1 3 17 17 C 1.46900 * 110.99710 * 72.50096 * 16 2 1 18 18 C 1.46892 * 111.00629 * 308.54749 * 16 2 1 19 19 C 1.50699 * 109.47589 * 189.99984 * 18 16 2 20 20 O 1.21297 * 119.99471 * 359.97438 * 19 18 16 21 21 N 1.34768 * 120.00382 * 179.97438 * 19 18 16 22 22 C 1.37094 * 120.00217 * 179.97438 * 21 19 18 23 23 H 1.07999 * 119.99928 * 359.97438 * 22 21 19 24 24 C 1.38956 * 120.00137 * 179.97438 * 22 21 19 25 25 N 1.31408 * 119.99929 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00026 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.46657 * 90.00216 * 26 24 22 28 28 H 1.48501 * 109.46969 * 210.00013 * 26 24 22 29 29 H 1.48499 * 109.47276 * 330.00172 * 26 24 22 30 30 H 1.08998 * 109.46913 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47394 * 300.00186 * 1 2 3 32 32 H 1.09005 * 109.46461 * 59.99848 * 1 2 3 33 33 H 1.09003 * 109.46990 * 55.31702 * 4 2 1 34 34 H 1.09001 * 109.47199 * 295.31771 * 4 2 1 35 35 H 0.97000 * 119.99999 * 355.19381 * 5 4 2 36 36 H 1.08997 * 109.47269 * 179.97438 * 10 8 6 37 37 H 1.09001 * 109.47089 * 300.00644 * 10 8 6 38 38 H 1.08999 * 109.47020 * 59.99781 * 10 8 6 39 39 H 1.08004 * 126.12423 * 359.97438 * 12 11 8 40 40 H 1.08001 * 126.03679 * 179.97438 * 13 12 11 41 41 H 1.07994 * 125.89674 * 180.02562 * 14 13 12 42 42 H 1.09004 * 109.47380 * 53.75652 * 17 16 2 43 43 H 1.09003 * 109.47571 * 173.75869 * 17 16 2 44 44 H 1.09000 * 109.47389 * 293.75824 * 17 16 2 45 45 H 1.09002 * 109.46608 * 309.99981 * 18 16 2 46 46 H 1.08993 * 109.47405 * 69.99321 * 18 16 2 47 47 H 0.97004 * 119.99958 * 359.97438 * 21 19 18 48 48 H 0.96997 * 120.00423 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5005 -0.8198 1.1943 6 6 4.1811 -1.3332 2.2382 7 8 3.5843 -1.7140 3.2229 8 6 5.6837 -1.4340 2.1818 9 1 6.1100 -0.4391 2.0533 10 6 6.0917 -2.3199 1.0031 11 7 6.1808 -2.0214 3.4285 12 6 6.2782 -3.3393 3.7017 13 6 6.7816 -3.4654 4.9514 14 6 6.9989 -2.1805 5.4595 15 7 6.6440 -1.3142 4.5455 16 7 2.0197 -0.6926 -1.1994 17 6 1.8064 0.1232 -2.4023 18 6 1.3895 -2.0120 -1.3396 19 6 2.0860 -2.7884 -2.4274 20 8 3.0157 -2.2911 -3.0272 21 7 1.6760 -4.0351 -2.7338 22 6 2.3093 -4.7411 -3.7238 23 1 3.1365 -4.2980 -4.2584 24 6 1.8869 -6.0267 -4.0393 25 7 0.8800 -6.5656 -3.3891 26 14 2.7493 -6.9884 -5.3887 27 1 3.8692 -7.7678 -4.8025 28 1 1.7832 -7.9160 -6.0303 29 1 3.2810 -6.0461 -6.4058 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3632 0.5139 -0.8900 33 1 1.6097 -1.7219 1.2922 34 1 1.7467 -0.1613 2.1373 35 1 3.9779 -0.5155 0.4066 36 1 7.1784 -2.3924 0.9621 37 1 5.6653 -3.3148 1.1316 38 1 5.7218 -1.8833 0.0754 39 1 6.0034 -4.1485 3.0412 40 1 6.9798 -4.3941 5.4658 41 1 7.3957 -1.9444 6.4357 42 1 2.2480 1.1089 -2.2559 43 1 2.2757 -0.3618 -3.2582 44 1 0.7370 0.2279 -2.5854 45 1 1.4695 -2.5548 -0.3977 46 1 0.3383 -1.8870 -1.5986 47 1 0.9328 -4.4329 -2.2539 48 1 0.5849 -7.4629 -3.6096 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674894476.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:25 Heat of formation + Delta-G solvation = -2.966640 kcal Electronic energy + Delta-G solvation = -29883.202396 eV Core-core repulsion = 25781.601292 eV Total energy + Delta-G solvation = -4101.601105 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.26552 -40.95623 -40.30602 -38.72115 -35.97734 -35.69106 -35.26187 -33.24292 -32.11077 -31.02982 -30.38891 -29.53128 -27.66254 -26.72525 -25.72574 -24.99442 -22.47608 -21.98056 -21.84460 -20.85237 -20.42328 -19.71317 -18.69012 -18.14860 -18.11505 -17.00631 -16.81079 -16.52651 -16.27924 -16.05794 -15.72456 -15.65684 -15.28514 -15.09959 -14.95199 -14.71797 -14.46017 -14.09680 -13.95115 -13.75876 -13.64545 -13.47292 -13.42652 -13.31598 -13.09088 -13.00676 -12.83537 -12.65557 -12.44331 -12.37764 -12.16713 -12.12092 -11.80588 -11.67087 -11.41721 -11.21426 -10.36728 -10.24730 -10.11457 -9.97110 -9.52439 -9.19457 -8.44136 -5.92163 0.88105 1.37837 1.38761 1.42782 1.46305 1.54708 1.97932 2.09204 2.20525 2.29975 2.77967 3.23337 3.39639 3.45198 3.63310 3.74621 3.78851 3.97004 4.02072 4.13815 4.22538 4.28836 4.37821 4.50985 4.53304 4.57362 4.57769 4.64625 4.69316 4.69865 4.75214 4.86657 4.89043 4.99981 5.05895 5.15974 5.23540 5.29299 5.38266 5.43836 5.75699 5.88927 6.02230 6.08031 6.19956 6.47622 6.63004 6.75925 7.10544 7.16142 7.60355 8.15281 8.73364 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009602 B = 0.003196 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2915.431615 B = 8758.156193 C =10771.198995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.074 3.926 3 H 0.113 0.887 4 C 0.130 3.870 5 N -0.696 5.696 6 C 0.499 3.501 7 O -0.576 6.576 8 C 0.146 3.854 9 H 0.143 0.857 10 C -0.154 4.154 11 N -0.364 5.364 12 C 0.055 3.945 13 C -0.282 4.282 14 C 0.042 3.958 15 N -0.332 5.332 16 N -0.519 5.519 17 C 0.026 3.974 18 C 0.056 3.944 19 C 0.446 3.554 20 O -0.606 6.606 21 N -0.578 5.578 22 C -0.326 4.326 23 H 0.082 0.918 24 C -0.015 4.015 25 N -0.924 5.924 26 Si 0.989 3.011 27 H -0.272 1.272 28 H -0.275 1.275 29 H -0.271 1.271 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.052 0.948 34 H 0.078 0.922 35 H 0.419 0.581 36 H 0.093 0.907 37 H 0.063 0.937 38 H 0.100 0.900 39 H 0.183 0.817 40 H 0.169 0.831 41 H 0.211 0.789 42 H 0.086 0.914 43 H 0.058 0.942 44 H 0.028 0.972 45 H 0.094 0.906 46 H 0.066 0.934 47 H 0.393 0.607 48 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.939 11.421 11.282 16.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.034 4.034 3 H 0.131 0.869 4 C 0.006 3.994 5 N -0.348 5.348 6 C 0.283 3.717 7 O -0.456 6.456 8 C 0.040 3.960 9 H 0.161 0.839 10 C -0.212 4.212 11 N -0.146 5.146 12 C -0.091 4.091 13 C -0.311 4.311 14 C -0.144 4.144 15 N -0.153 5.153 16 N -0.243 5.243 17 C -0.122 4.122 18 C -0.075 4.075 19 C 0.233 3.767 20 O -0.492 6.492 21 N -0.216 5.216 22 C -0.455 4.455 23 H 0.100 0.900 24 C -0.214 4.214 25 N -0.565 5.565 26 Si 0.813 3.187 27 H -0.198 1.198 28 H -0.200 1.200 29 H -0.195 1.195 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.257 0.743 36 H 0.111 0.889 37 H 0.082 0.918 38 H 0.118 0.882 39 H 0.200 0.800 40 H 0.187 0.813 41 H 0.228 0.772 42 H 0.105 0.895 43 H 0.077 0.923 44 H 0.047 0.953 45 H 0.112 0.888 46 H 0.084 0.916 47 H 0.226 0.774 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.384 12.547 11.161 17.634 hybrid contribution -0.957 -1.688 -0.639 2.043 sum 4.427 10.859 10.521 15.755 Atomic orbital electron populations 1.22377 0.95207 1.02839 1.03755 1.22071 0.94499 0.98708 0.88155 0.86949 1.21460 0.79590 1.00466 0.97927 1.45734 1.07961 1.62442 1.18702 1.21070 0.90360 0.77346 0.82875 1.90724 1.71059 1.49970 1.33810 1.21217 0.90474 1.02145 0.82145 0.83914 1.22139 1.04260 0.99536 0.95258 1.48367 1.49127 1.04483 1.12597 1.22893 0.99788 0.87427 0.98958 1.21829 1.13545 0.99608 0.96156 1.24423 0.98951 0.91340 0.99715 1.77241 1.20663 1.22198 0.95218 1.61735 1.57552 1.01514 1.03533 1.22451 0.99250 0.97760 0.92740 1.21736 0.96515 0.91495 0.97752 1.20677 0.86443 0.82547 0.87028 1.90456 1.32460 1.69880 1.56383 1.41967 1.32033 1.13645 1.33908 1.19637 1.15026 0.97282 1.13589 0.89984 1.26002 0.97155 0.97574 1.00681 1.69676 1.27159 1.16983 1.42682 0.84974 0.77918 0.77856 0.77910 1.19751 1.19993 1.19542 0.92563 0.90014 0.91360 0.93018 0.90353 0.74333 0.88858 0.91800 0.88177 0.79987 0.81341 0.77234 0.89537 0.92333 0.95327 0.88759 0.91575 0.77423 0.91505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.03 8.42 71.98 0.61 -2.43 16 2 C 0.07 1.39 2.47 44.92 0.11 1.50 16 3 H 0.11 1.69 7.93 -2.39 -0.02 1.67 16 4 C 0.13 2.83 4.94 86.38 0.43 3.25 16 5 N -0.70 -15.66 5.31 -463.06 -2.46 -18.12 16 6 C 0.50 13.43 7.22 87.66 0.63 14.07 16 7 O -0.58 -20.56 16.41 -3.04 -0.05 -20.61 16 8 C 0.15 3.26 3.73 44.24 0.17 3.43 16 9 H 0.14 2.62 8.14 -2.39 -0.02 2.60 16 10 C -0.15 -2.93 8.73 71.98 0.63 -2.30 16 11 N -0.36 -9.60 3.02 -331.06 -1.00 -10.60 16 12 C 0.05 1.34 10.57 83.54 0.88 2.22 16 13 C -0.28 -6.21 10.80 21.99 0.24 -5.98 16 14 C 0.04 0.95 12.03 85.24 1.02 1.98 16 15 N -0.33 -9.38 12.58 -57.03 -0.72 -10.09 16 16 N -0.52 -13.35 3.82 -901.63 -3.45 -16.80 16 17 C 0.03 0.66 8.90 127.69 1.14 1.80 16 18 C 0.06 1.76 4.31 85.56 0.37 2.13 16 19 C 0.45 19.53 7.52 87.66 0.66 20.18 16 20 O -0.61 -30.04 13.88 -3.08 -0.04 -30.08 16 21 N -0.58 -28.38 5.29 -306.99 -1.62 -30.00 16 22 C -0.33 -17.75 9.68 84.04 0.81 -16.94 16 23 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 24 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 25 N -0.92 -49.25 13.05 21.66 0.28 -48.96 16 26 Si 0.99 41.93 29.55 68.60 2.03 43.95 16 27 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 28 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 29 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 30 H 0.06 1.05 6.54 -2.39 -0.02 1.04 16 31 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.07 1.11 6.92 -2.38 -0.02 1.09 16 33 H 0.05 1.32 6.65 -2.39 -0.02 1.30 16 34 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.42 8.40 7.49 -92.71 -0.69 7.71 16 36 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.06 1.36 7.15 -2.39 -0.02 1.34 16 38 H 0.10 1.86 7.56 -2.39 -0.02 1.84 16 39 H 0.18 3.74 7.26 -2.91 -0.02 3.71 16 40 H 0.17 2.75 8.06 -2.91 -0.02 2.73 16 41 H 0.21 3.13 8.06 -2.91 -0.02 3.11 16 42 H 0.09 1.74 7.98 -2.39 -0.02 1.72 16 43 H 0.06 2.02 5.92 -2.39 -0.01 2.01 16 44 H 0.03 0.67 6.96 -2.39 -0.02 0.66 16 45 H 0.09 2.86 6.30 -2.39 -0.02 2.84 16 46 H 0.07 1.91 6.81 -2.39 -0.02 1.90 16 47 H 0.39 18.75 7.90 -92.71 -0.73 18.02 16 48 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 Total: -1.00 -73.83 392.59 0.71 -73.12 By element: Atomic # 1 Polarization: 46.01 SS G_CDS: -0.43 Total: 45.58 kcal Atomic # 6 Polarization: 14.45 SS G_CDS: 8.16 Total: 22.61 kcal Atomic # 7 Polarization: -125.62 SS G_CDS: -8.96 Total: -134.58 kcal Atomic # 8 Polarization: -50.59 SS G_CDS: -0.09 Total: -50.69 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.95 kcal Total: -73.83 0.71 -73.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674894476.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.157 kcal (2) G-P(sol) polarization free energy of solvation -73.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds