Wall clock time and date at job start Tue Mar 31 2020 20:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46834 * 2 1 4 4 C 1.53000 * 109.47006 * 240.00046 * 2 1 3 5 5 N 1.46494 * 109.47293 * 185.00033 * 4 2 1 6 6 C 1.34778 * 120.00233 * 180.02562 * 5 4 2 7 7 O 1.21273 * 119.99742 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00068 * 179.97438 * 6 5 4 9 9 H 1.09004 * 109.47400 * 299.99952 * 8 6 5 10 10 C 1.53005 * 109.47109 * 59.99619 * 8 6 5 11 11 N 1.46500 * 109.47402 * 180.02562 * 8 6 5 12 12 C 1.34943 * 126.03414 * 274.71649 * 11 8 6 13 13 C 1.35316 * 107.74531 * 180.25880 * 12 11 8 14 14 C 1.39873 * 107.91987 * 0.02562 * 13 12 11 15 15 N 1.30832 * 108.20166 * 0.02562 * 14 13 12 16 16 N 1.46899 * 109.47209 * 120.00102 * 2 1 3 17 17 C 1.46900 * 110.99851 * 58.94936 * 16 2 1 18 18 C 1.46899 * 110.99968 * 294.99887 * 16 2 1 19 19 C 1.50699 * 109.46963 * 189.99927 * 18 16 2 20 20 O 1.21287 * 120.00625 * 0.02562 * 19 18 16 21 21 N 1.34784 * 119.99608 * 180.02562 * 19 18 16 22 22 C 1.37101 * 119.99451 * 180.02562 * 21 19 18 23 23 H 1.07998 * 120.00362 * 359.97438 * 22 21 19 24 24 C 1.38947 * 119.99580 * 179.97438 * 22 21 19 25 25 N 1.31418 * 120.00349 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 120.00112 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.46762 * 59.99673 * 26 24 22 28 28 H 1.48498 * 109.47431 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.47126 * 300.00172 * 26 24 22 30 30 H 1.08995 * 109.47536 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47342 * 299.99974 * 1 2 3 32 32 H 1.09004 * 109.47484 * 59.99611 * 1 2 3 33 33 H 1.09001 * 109.47105 * 64.99757 * 4 2 1 34 34 H 1.09004 * 109.46977 * 305.00225 * 4 2 1 35 35 H 0.96999 * 119.99968 * 359.97438 * 5 4 2 36 36 H 1.08998 * 109.46350 * 60.00200 * 10 8 6 37 37 H 1.08999 * 109.46976 * 179.97438 * 10 8 6 38 38 H 1.08998 * 109.47542 * 300.00028 * 10 8 6 39 39 H 1.07996 * 126.13000 * 0.26422 * 12 11 8 40 40 H 1.07997 * 126.04396 * 180.02562 * 13 12 11 41 41 H 1.07999 * 125.89561 * 179.97438 * 14 13 12 42 42 H 1.08999 * 109.46971 * 60.00329 * 17 16 2 43 43 H 1.09002 * 109.46878 * 179.97438 * 17 16 2 44 44 H 1.08996 * 109.47728 * 300.00335 * 17 16 2 45 45 H 1.09000 * 109.47085 * 310.00288 * 18 16 2 46 46 H 1.09008 * 109.47226 * 69.99774 * 18 16 2 47 47 H 0.96995 * 120.00251 * 0.02562 * 21 19 18 48 48 H 0.96991 * 120.00145 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.4999 -0.8264 -1.1906 6 6 4.1730 -1.4283 -2.1913 7 8 3.5699 -1.8824 -3.1404 8 6 5.6749 -1.5360 -2.1312 9 1 6.1093 -0.5373 -2.0852 10 6 6.0802 -2.3262 -0.8853 11 7 6.1634 -2.2256 -3.3279 12 6 6.2548 -3.5618 -3.4923 13 6 6.7560 -3.7919 -4.7280 14 6 6.9790 -2.5539 -5.3394 15 7 6.6250 -1.6142 -4.5007 16 7 2.0197 -0.6925 1.1994 17 6 1.5282 -2.0761 1.2459 18 6 1.6487 0.0391 2.4180 19 6 2.3680 -0.5572 3.6005 20 8 3.1163 -1.4987 3.4435 21 7 2.1796 -0.0442 4.8326 22 6 2.8343 -0.5864 5.9082 23 1 3.5006 -1.4248 5.7683 24 6 2.6405 -0.0573 7.1783 25 7 1.8301 0.9631 7.3484 26 14 3.5320 -0.7964 8.6440 27 1 4.9986 -0.6961 8.4334 28 1 3.1575 -0.0564 9.8759 29 1 3.1491 -2.2240 8.7879 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.7516 -0.1583 -2.1370 34 1 1.6053 -1.7198 -1.2952 35 1 3.9824 -0.4622 -0.4320 36 1 5.6459 -3.3249 -0.9315 37 1 7.1665 -2.4045 -0.8421 38 1 5.7169 -1.8127 0.0048 39 1 5.9776 -4.3130 -2.7677 40 1 6.9497 -4.7604 -5.1650 41 1 7.3758 -2.4002 -6.3321 42 1 1.8761 -2.6150 0.3647 43 1 1.9060 -2.5658 2.1435 44 1 0.4384 -2.0742 1.2639 45 1 1.9297 1.0870 2.3124 46 1 0.5722 -0.0345 2.5726 47 1 1.5808 0.7085 4.9582 48 1 1.6946 1.3322 8.2350 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674894477.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:28 Heat of formation + Delta-G solvation = 23.204255 kcal Electronic energy + Delta-G solvation = -29429.545477 eV Core-core repulsion = 25329.079227 eV Total energy + Delta-G solvation = -4100.466249 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.41181 -39.90226 -38.91892 -37.38720 -34.77859 -34.44201 -33.86472 -31.35125 -31.07148 -30.18098 -29.57156 -28.02515 -26.68213 -25.47067 -24.74006 -23.81051 -21.57393 -21.14359 -20.30440 -19.73340 -19.14539 -17.90894 -17.78777 -17.23006 -16.63143 -16.07516 -15.61578 -15.29821 -14.96824 -14.85635 -14.53164 -14.43350 -14.15537 -13.91679 -13.68572 -13.57138 -13.38671 -13.11949 -12.94704 -12.85490 -12.65722 -12.52009 -12.35194 -12.00626 -11.83950 -11.80378 -11.51555 -11.29791 -11.26843 -10.98789 -10.82584 -10.79149 -10.49538 -10.27572 -10.20901 -9.52915 -9.46634 -9.15618 -8.67830 -8.55674 -8.05501 -7.95053 -6.47814 -3.88947 1.74923 2.20946 2.41406 2.79352 3.11259 3.14853 3.21568 3.25133 3.82402 3.86760 4.17283 4.24345 4.47357 4.57435 4.60199 4.73544 4.86908 4.88374 5.04766 5.13449 5.19272 5.24986 5.31361 5.37138 5.44455 5.45238 5.49133 5.63782 5.65723 5.70305 5.78163 5.82456 5.84016 5.91434 5.92058 6.08881 6.20143 6.30453 6.48165 6.54320 6.83930 7.12996 7.24544 7.39779 7.48831 7.61237 7.99356 8.04342 8.54714 9.11582 9.47668 9.98854 10.69654 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015411 B = 0.002359 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.459943 B =11866.957138 C =13214.850773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.063 3.937 3 H 0.089 0.911 4 C 0.132 3.868 5 N -0.707 5.707 6 C 0.501 3.499 7 O -0.532 6.532 8 C 0.144 3.856 9 H 0.127 0.873 10 C -0.162 4.162 11 N -0.353 5.353 12 C 0.071 3.929 13 C -0.278 4.278 14 C 0.045 3.955 15 N -0.294 5.294 16 N -0.510 5.510 17 C 0.016 3.984 18 C 0.044 3.956 19 C 0.443 3.557 20 O -0.579 6.579 21 N -0.563 5.563 22 C -0.300 4.300 23 H 0.102 0.898 24 C 0.023 3.977 25 N -0.901 5.901 26 Si 0.930 3.070 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.274 1.274 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.413 0.587 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.099 0.901 39 H 0.170 0.830 40 H 0.146 0.854 41 H 0.181 0.819 42 H 0.059 0.941 43 H 0.096 0.904 44 H 0.020 0.980 45 H 0.087 0.913 46 H 0.050 0.950 47 H 0.392 0.608 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.060 -2.761 -17.788 18.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.046 4.046 3 H 0.108 0.892 4 C 0.008 3.992 5 N -0.359 5.359 6 C 0.284 3.716 7 O -0.408 6.408 8 C 0.037 3.963 9 H 0.145 0.855 10 C -0.220 4.220 11 N -0.134 5.134 12 C -0.075 4.075 13 C -0.307 4.307 14 C -0.142 4.142 15 N -0.114 5.114 16 N -0.234 5.234 17 C -0.132 4.132 18 C -0.087 4.087 19 C 0.228 3.772 20 O -0.463 6.463 21 N -0.199 5.199 22 C -0.429 4.429 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.542 5.542 26 Si 0.757 3.243 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.250 0.750 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.117 0.883 39 H 0.187 0.813 40 H 0.164 0.836 41 H 0.198 0.802 42 H 0.078 0.922 43 H 0.114 0.886 44 H 0.039 0.961 45 H 0.105 0.895 46 H 0.068 0.932 47 H 0.225 0.775 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.432 -2.300 -18.089 18.555 hybrid contribution -0.767 -0.473 1.158 1.468 sum 2.665 -2.773 -16.931 17.362 Atomic orbital electron populations 1.22401 0.96502 1.02874 1.02776 1.22050 0.93596 0.98677 0.90277 0.89241 1.21411 0.79772 1.01065 0.96958 1.45778 1.07877 1.59054 1.23237 1.20661 0.89446 0.78630 0.82867 1.90746 1.69619 1.47390 1.33092 1.21115 0.92147 0.99715 0.83310 0.85519 1.22192 1.03526 1.01332 0.94980 1.48211 1.48917 1.04235 1.12084 1.22434 0.99860 0.86279 0.98971 1.21446 1.14194 0.99253 0.95853 1.23839 0.99893 0.90925 0.99521 1.77330 1.19077 1.22237 0.92796 1.61839 1.58867 1.02509 1.00192 1.22602 0.96865 0.89412 1.04287 1.21884 0.98215 0.98418 0.90213 1.19708 0.86752 0.86942 0.83753 1.90475 1.40868 1.30244 1.84751 1.41870 1.41378 1.31171 1.05530 1.19625 1.23521 1.14885 0.84889 0.87973 1.25264 0.97283 0.96304 0.99054 1.69598 1.36509 1.23794 1.24326 0.85927 0.79623 0.78907 0.79817 1.19879 1.20981 1.19926 0.91806 0.91572 0.91885 0.91185 0.91276 0.74993 0.90904 0.90220 0.88271 0.81301 0.83628 0.80157 0.92183 0.88557 0.96135 0.89452 0.93163 0.77519 0.91781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.79 8.50 37.16 0.32 -1.47 16 2 C 0.06 0.67 2.50 -67.71 -0.17 0.50 16 3 H 0.09 0.88 8.03 -51.93 -0.42 0.46 16 4 C 0.13 1.44 4.69 -4.04 -0.02 1.42 16 5 N -0.71 -7.75 5.28 -60.30 -0.32 -8.07 16 6 C 0.50 6.31 7.22 -10.99 -0.08 6.23 16 7 O -0.53 -8.84 16.42 5.56 0.09 -8.75 16 8 C 0.14 1.51 3.73 -69.08 -0.26 1.25 16 9 H 0.13 1.17 8.14 -51.93 -0.42 0.74 16 10 C -0.16 -1.38 8.73 37.16 0.32 -1.05 16 11 N -0.35 -4.38 3.02 -55.99 -0.17 -4.55 16 12 C 0.07 0.78 10.58 -17.23 -0.18 0.60 16 13 C -0.28 -2.91 10.80 -40.01 -0.43 -3.34 16 14 C 0.04 0.50 12.03 -17.37 -0.21 0.29 16 15 N -0.29 -4.02 12.58 30.62 0.39 -3.64 16 16 N -0.51 -6.98 3.93 -236.33 -0.93 -7.91 16 17 C 0.02 0.23 8.45 60.06 0.51 0.74 16 18 C 0.04 0.68 4.89 -4.98 -0.02 0.66 16 19 C 0.44 9.51 7.47 -10.98 -0.08 9.42 16 20 O -0.58 -14.11 13.91 5.55 0.08 -14.03 16 21 N -0.56 -13.38 5.29 -10.96 -0.06 -13.44 16 22 C -0.30 -7.95 9.68 -14.93 -0.14 -8.09 16 23 H 0.10 2.84 7.16 -52.49 -0.38 2.46 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -23.69 13.05 55.50 0.72 -22.97 16 26 Si 0.93 20.35 29.55 -169.99 -5.02 15.32 16 27 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 28 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 29 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 30 H 0.06 0.64 6.38 -51.93 -0.33 0.31 16 31 H 0.07 0.66 6.75 -51.93 -0.35 0.30 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.83 6.70 -51.93 -0.35 0.48 16 35 H 0.41 4.23 7.56 -40.82 -0.31 3.92 16 36 H 0.07 0.62 7.16 -51.93 -0.37 0.25 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.10 0.84 7.56 -51.93 -0.39 0.45 16 39 H 0.17 1.44 7.26 -52.49 -0.38 1.06 16 40 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 41 H 0.18 1.39 8.06 -52.49 -0.42 0.97 16 42 H 0.06 0.81 6.44 -51.93 -0.33 0.47 16 43 H 0.10 1.74 5.83 -51.93 -0.30 1.44 16 44 H 0.02 0.27 6.28 -51.93 -0.33 -0.05 16 45 H 0.09 1.22 8.00 -51.93 -0.42 0.80 16 46 H 0.05 0.74 6.94 -51.92 -0.36 0.37 16 47 H 0.39 8.97 7.90 -40.82 -0.32 8.65 16 48 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 392.06 15.07 5.91 5.91 Total: -1.00 -33.52 392.06 -6.87 -40.39 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: -7.01 Total: 14.09 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: -0.55 Total: 7.66 kcal Atomic # 7 Polarization: -60.22 SS G_CDS: -0.36 Total: -60.58 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: 0.17 Total: -22.78 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.52 -6.87 -40.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674894477.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.591 kcal (2) G-P(sol) polarization free energy of solvation -33.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds