Wall clock time and date at job start Tue Mar 31 2020 20:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46834 * 2 1 4 4 C 1.53000 * 109.47006 * 240.00046 * 2 1 3 5 5 N 1.46494 * 109.47293 * 185.00033 * 4 2 1 6 6 C 1.34778 * 120.00233 * 180.02562 * 5 4 2 7 7 O 1.21273 * 119.99742 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00068 * 179.97438 * 6 5 4 9 9 H 1.09004 * 109.47400 * 299.99952 * 8 6 5 10 10 C 1.53005 * 109.47109 * 59.99619 * 8 6 5 11 11 N 1.46500 * 109.47402 * 180.02562 * 8 6 5 12 12 C 1.34943 * 126.03414 * 274.71649 * 11 8 6 13 13 C 1.35316 * 107.74531 * 180.25880 * 12 11 8 14 14 C 1.39873 * 107.91987 * 0.02562 * 13 12 11 15 15 N 1.30832 * 108.20166 * 0.02562 * 14 13 12 16 16 N 1.46899 * 109.47209 * 120.00102 * 2 1 3 17 17 C 1.46900 * 110.99851 * 58.94936 * 16 2 1 18 18 C 1.46899 * 110.99968 * 294.99887 * 16 2 1 19 19 C 1.50699 * 109.46963 * 189.99927 * 18 16 2 20 20 O 1.21287 * 120.00625 * 0.02562 * 19 18 16 21 21 N 1.34784 * 119.99608 * 180.02562 * 19 18 16 22 22 C 1.37101 * 119.99451 * 180.02562 * 21 19 18 23 23 H 1.07998 * 120.00362 * 359.97438 * 22 21 19 24 24 C 1.38947 * 119.99580 * 179.97438 * 22 21 19 25 25 N 1.31418 * 120.00349 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 120.00112 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.46762 * 59.99673 * 26 24 22 28 28 H 1.48498 * 109.47431 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.47126 * 300.00172 * 26 24 22 30 30 H 1.08995 * 109.47536 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47342 * 299.99974 * 1 2 3 32 32 H 1.09004 * 109.47484 * 59.99611 * 1 2 3 33 33 H 1.09001 * 109.47105 * 64.99757 * 4 2 1 34 34 H 1.09004 * 109.46977 * 305.00225 * 4 2 1 35 35 H 0.96999 * 119.99968 * 359.97438 * 5 4 2 36 36 H 1.08998 * 109.46350 * 60.00200 * 10 8 6 37 37 H 1.08999 * 109.46976 * 179.97438 * 10 8 6 38 38 H 1.08998 * 109.47542 * 300.00028 * 10 8 6 39 39 H 1.07996 * 126.13000 * 0.26422 * 12 11 8 40 40 H 1.07997 * 126.04396 * 180.02562 * 13 12 11 41 41 H 1.07999 * 125.89561 * 179.97438 * 14 13 12 42 42 H 1.08999 * 109.46971 * 60.00329 * 17 16 2 43 43 H 1.09002 * 109.46878 * 179.97438 * 17 16 2 44 44 H 1.08996 * 109.47728 * 300.00335 * 17 16 2 45 45 H 1.09000 * 109.47085 * 310.00288 * 18 16 2 46 46 H 1.09008 * 109.47226 * 69.99774 * 18 16 2 47 47 H 0.96995 * 120.00251 * 0.02562 * 21 19 18 48 48 H 0.96991 * 120.00145 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.4999 -0.8264 -1.1906 6 6 4.1730 -1.4283 -2.1913 7 8 3.5699 -1.8824 -3.1404 8 6 5.6749 -1.5360 -2.1312 9 1 6.1093 -0.5373 -2.0852 10 6 6.0802 -2.3262 -0.8853 11 7 6.1634 -2.2256 -3.3279 12 6 6.2548 -3.5618 -3.4923 13 6 6.7560 -3.7919 -4.7280 14 6 6.9790 -2.5539 -5.3394 15 7 6.6250 -1.6142 -4.5007 16 7 2.0197 -0.6925 1.1994 17 6 1.5282 -2.0761 1.2459 18 6 1.6487 0.0391 2.4180 19 6 2.3680 -0.5572 3.6005 20 8 3.1163 -1.4987 3.4435 21 7 2.1796 -0.0442 4.8326 22 6 2.8343 -0.5864 5.9082 23 1 3.5006 -1.4248 5.7683 24 6 2.6405 -0.0573 7.1783 25 7 1.8301 0.9631 7.3484 26 14 3.5320 -0.7964 8.6440 27 1 4.9986 -0.6961 8.4334 28 1 3.1575 -0.0564 9.8759 29 1 3.1491 -2.2240 8.7879 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.7516 -0.1583 -2.1370 34 1 1.6053 -1.7198 -1.2952 35 1 3.9824 -0.4622 -0.4320 36 1 5.6459 -3.3249 -0.9315 37 1 7.1665 -2.4045 -0.8421 38 1 5.7169 -1.8127 0.0048 39 1 5.9776 -4.3130 -2.7677 40 1 6.9497 -4.7604 -5.1650 41 1 7.3758 -2.4002 -6.3321 42 1 1.8761 -2.6150 0.3647 43 1 1.9060 -2.5658 2.1435 44 1 0.4384 -2.0742 1.2639 45 1 1.9297 1.0870 2.3124 46 1 0.5722 -0.0345 2.5726 47 1 1.5808 0.7085 4.9582 48 1 1.6946 1.3322 8.2350 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674894477.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:27 Heat of formation + Delta-G solvation = -2.123013 kcal Electronic energy + Delta-G solvation = -29430.643749 eV Core-core repulsion = 25329.079227 eV Total energy + Delta-G solvation = -4101.564522 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.26095 -40.93786 -40.29921 -38.76417 -35.96529 -35.67936 -35.23662 -33.22461 -32.12077 -31.02462 -30.37349 -29.34993 -27.57111 -26.99225 -25.72598 -25.12006 -22.47750 -21.96806 -21.43259 -20.83812 -20.51663 -19.76621 -18.70960 -18.11829 -17.92153 -17.13347 -16.81917 -16.52946 -16.31891 -16.18876 -15.75744 -15.65722 -15.33877 -15.04500 -14.79237 -14.68587 -14.45247 -14.20264 -13.97425 -13.69031 -13.64099 -13.45717 -13.40361 -13.30687 -13.07650 -12.89973 -12.80698 -12.62604 -12.42492 -12.37200 -12.25782 -12.11612 -11.77868 -11.65295 -11.39583 -11.21039 -10.36515 -10.22111 -10.12663 -9.94753 -9.51527 -9.18143 -8.42673 -5.90269 0.89748 1.38565 1.41459 1.43720 1.46372 1.53562 1.98649 2.12317 2.21215 2.30730 2.76452 3.25115 3.42258 3.49243 3.64815 3.71738 3.80086 3.98050 4.05677 4.14513 4.27263 4.29845 4.37194 4.54467 4.56463 4.59427 4.59705 4.60968 4.68736 4.71144 4.75545 4.84397 4.87882 5.00889 5.07613 5.16355 5.20655 5.29448 5.38596 5.44993 5.75667 5.89566 6.04315 6.08520 6.19738 6.47123 6.65670 6.76932 7.09855 7.18160 7.63293 8.18711 8.74370 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015411 B = 0.002359 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.459943 B =11866.957138 C =13214.850773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.071 3.929 3 H 0.106 0.894 4 C 0.134 3.866 5 N -0.698 5.698 6 C 0.501 3.499 7 O -0.576 6.576 8 C 0.144 3.856 9 H 0.138 0.862 10 C -0.153 4.153 11 N -0.364 5.364 12 C 0.057 3.943 13 C -0.283 4.283 14 C 0.040 3.960 15 N -0.336 5.336 16 N -0.518 5.518 17 C 0.025 3.975 18 C 0.057 3.943 19 C 0.444 3.556 20 O -0.609 6.609 21 N -0.577 5.577 22 C -0.326 4.326 23 H 0.080 0.920 24 C -0.015 4.015 25 N -0.922 5.922 26 Si 0.988 3.012 27 H -0.272 1.272 28 H -0.274 1.274 29 H -0.273 1.273 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.058 0.942 35 H 0.418 0.582 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.189 0.811 40 H 0.170 0.830 41 H 0.209 0.791 42 H 0.067 0.933 43 H 0.057 0.943 44 H 0.032 0.968 45 H 0.112 0.888 46 H 0.067 0.933 47 H 0.395 0.605 48 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.023 -2.387 -18.315 18.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.037 4.037 3 H 0.124 0.876 4 C 0.010 3.990 5 N -0.349 5.349 6 C 0.286 3.714 7 O -0.455 6.455 8 C 0.038 3.962 9 H 0.156 0.844 10 C -0.211 4.211 11 N -0.146 5.146 12 C -0.088 4.088 13 C -0.312 4.312 14 C -0.146 4.146 15 N -0.157 5.157 16 N -0.242 5.242 17 C -0.123 4.123 18 C -0.074 4.074 19 C 0.232 3.768 20 O -0.495 6.495 21 N -0.215 5.215 22 C -0.456 4.456 23 H 0.098 0.902 24 C -0.214 4.214 25 N -0.563 5.563 26 Si 0.813 3.187 27 H -0.197 1.197 28 H -0.199 1.199 29 H -0.199 1.199 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.256 0.744 36 H 0.090 0.910 37 H 0.109 0.891 38 H 0.118 0.882 39 H 0.206 0.794 40 H 0.187 0.813 41 H 0.225 0.775 42 H 0.086 0.914 43 H 0.076 0.924 44 H 0.051 0.949 45 H 0.130 0.870 46 H 0.085 0.915 47 H 0.228 0.772 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.388 -1.904 -18.612 19.014 hybrid contribution -0.761 -0.633 1.207 1.561 sum 2.627 -2.537 -17.405 17.784 Atomic orbital electron populations 1.22372 0.95270 1.02843 1.03744 1.22077 0.94499 0.98880 0.88253 0.87561 1.21415 0.79563 1.00649 0.97358 1.45768 1.08063 1.58211 1.22903 1.21018 0.90280 0.77811 0.82284 1.90720 1.70635 1.49401 1.34758 1.21229 0.90643 1.00671 0.83657 0.84440 1.22144 1.04196 1.00899 0.93869 1.48372 1.49278 1.04735 1.12211 1.22929 0.99693 0.86334 0.99882 1.21836 1.13595 1.00130 0.95654 1.24420 0.98964 0.90885 1.00333 1.77261 1.20745 1.23785 0.93867 1.61767 1.59591 1.02231 1.00575 1.22408 0.97436 0.89783 1.02625 1.21747 0.98175 0.99157 0.88328 1.20761 0.85715 0.85867 0.84507 1.90463 1.42101 1.31519 1.85435 1.41947 1.41930 1.31710 1.05920 1.19580 1.24394 1.15141 0.86500 0.90195 1.25975 0.97854 0.96610 1.00976 1.69661 1.37226 1.24456 1.24977 0.85049 0.78494 0.78149 0.77032 1.19687 1.19913 1.19869 0.92353 0.91481 0.90051 0.90572 0.92325 0.74393 0.91020 0.89113 0.88198 0.79434 0.81263 0.77456 0.91412 0.92441 0.94923 0.86953 0.91515 0.77166 0.91504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.98 8.50 71.98 0.61 -2.37 16 2 C 0.07 1.32 2.50 44.92 0.11 1.44 16 3 H 0.11 1.70 8.03 -2.39 -0.02 1.68 16 4 C 0.13 2.70 4.69 86.38 0.40 3.11 16 5 N -0.70 -14.49 5.28 -463.07 -2.45 -16.93 16 6 C 0.50 12.38 7.22 87.66 0.63 13.02 16 7 O -0.58 -19.09 16.42 -3.01 -0.05 -19.14 16 8 C 0.14 2.95 3.73 44.25 0.17 3.11 16 9 H 0.14 2.44 8.14 -2.39 -0.02 2.43 16 10 C -0.15 -2.46 8.73 71.98 0.63 -1.83 16 11 N -0.36 -8.87 3.02 -331.06 -1.00 -9.87 16 12 C 0.06 1.22 10.58 83.54 0.88 2.10 16 13 C -0.28 -5.57 10.80 21.99 0.24 -5.33 16 14 C 0.04 0.85 12.03 85.24 1.03 1.88 16 15 N -0.34 -9.07 12.58 -57.02 -0.72 -9.79 16 16 N -0.52 -13.27 3.93 -901.61 -3.54 -16.82 16 17 C 0.03 0.71 8.45 127.69 1.08 1.79 16 18 C 0.06 1.66 4.89 85.56 0.42 2.08 16 19 C 0.44 18.98 7.47 87.66 0.66 19.63 16 20 O -0.61 -30.12 13.91 -3.05 -0.04 -30.16 16 21 N -0.58 -27.63 5.29 -306.98 -1.62 -29.25 16 22 C -0.33 -17.60 9.68 84.04 0.81 -16.79 16 23 H 0.08 4.58 7.16 -2.91 -0.02 4.56 16 24 C -0.01 -0.76 5.50 84.92 0.47 -0.29 16 25 N -0.92 -48.27 13.05 21.66 0.28 -47.98 16 26 Si 0.99 41.61 29.55 68.60 2.03 43.63 16 27 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 28 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 29 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 30 H 0.06 1.03 6.38 -2.39 -0.02 1.01 16 31 H 0.07 1.11 6.75 -2.39 -0.02 1.09 16 32 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 33 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.06 1.33 6.70 -2.39 -0.02 1.32 16 35 H 0.42 7.96 7.56 -92.71 -0.70 7.26 16 36 H 0.07 1.17 7.16 -2.39 -0.02 1.15 16 37 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.10 1.60 7.56 -2.39 -0.02 1.58 16 39 H 0.19 3.02 7.26 -2.91 -0.02 3.00 16 40 H 0.17 2.34 8.06 -2.91 -0.02 2.31 16 41 H 0.21 2.89 8.06 -2.91 -0.02 2.87 16 42 H 0.07 1.77 6.44 -2.39 -0.02 1.76 16 43 H 0.06 2.09 5.83 -2.39 -0.01 2.08 16 44 H 0.03 0.82 6.28 -2.39 -0.02 0.81 16 45 H 0.11 2.79 8.00 -2.39 -0.02 2.77 16 46 H 0.07 1.79 6.94 -2.38 -0.02 1.77 16 47 H 0.39 18.07 7.90 -92.71 -0.73 17.34 16 48 H 0.28 13.64 8.31 -92.72 -0.77 12.87 16 Total: -1.00 -73.47 392.06 0.59 -72.88 By element: Atomic # 1 Polarization: 42.29 SS G_CDS: -0.43 Total: 41.86 kcal Atomic # 6 Polarization: 13.43 SS G_CDS: 8.14 Total: 21.56 kcal Atomic # 7 Polarization: -121.60 SS G_CDS: -9.05 Total: -130.64 kcal Atomic # 8 Polarization: -49.20 SS G_CDS: -0.09 Total: -49.30 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.63 kcal Total: -73.47 0.59 -72.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674894477.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.755 kcal (2) G-P(sol) polarization free energy of solvation -73.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds