Wall clock time and date at job start Tue Mar 31 2020 20:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.47417 * 2 1 4 4 C 1.53006 * 109.47149 * 239.99568 * 2 1 3 5 5 N 1.46504 * 109.46883 * 184.99990 * 4 2 1 6 6 C 1.34776 * 119.99735 * 179.97438 * 5 4 2 7 7 O 1.21282 * 119.99940 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00035 * 179.97438 * 6 5 4 9 9 C 1.53006 * 109.47184 * 180.02562 * 8 6 5 10 10 N 1.46496 * 109.46995 * 180.02562 * 9 8 6 11 11 C 1.34951 * 126.03649 * 125.00636 * 10 9 8 12 12 C 1.35317 * 107.74641 * 179.97438 * 11 10 9 13 13 C 1.39874 * 107.92038 * 359.97438 * 12 11 10 14 14 N 1.30835 * 108.20038 * 359.74226 * 13 12 11 15 15 N 1.46905 * 109.47135 * 120.00079 * 2 1 3 16 16 C 1.46899 * 111.00124 * 58.94942 * 15 2 1 17 17 C 1.46903 * 110.99620 * 294.99743 * 15 2 1 18 18 C 1.50700 * 109.46823 * 189.99701 * 17 15 2 19 19 O 1.21292 * 120.00411 * 0.02562 * 18 17 15 20 20 N 1.34779 * 119.99896 * 179.97438 * 18 17 15 21 21 C 1.37094 * 120.00051 * 180.02562 * 20 18 17 22 22 H 1.07997 * 120.00008 * 359.97438 * 21 20 18 23 23 C 1.38949 * 119.99694 * 180.02562 * 21 20 18 24 24 N 1.31407 * 120.00498 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 119.99794 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47316 * 59.99342 * 25 23 21 27 27 H 1.48497 * 109.47032 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47055 * 299.99681 * 25 23 21 29 29 H 1.09007 * 109.47202 * 60.00035 * 1 2 3 30 30 H 1.09000 * 109.47417 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47186 * 300.00305 * 1 2 3 32 32 H 1.08998 * 109.46509 * 65.00496 * 4 2 1 33 33 H 1.08993 * 109.46955 * 305.00056 * 4 2 1 34 34 H 0.96998 * 120.00303 * 0.02562 * 5 4 2 35 35 H 1.09001 * 109.46665 * 60.00498 * 8 6 5 36 36 H 1.08993 * 109.47304 * 300.00054 * 8 6 5 37 37 H 1.09001 * 109.46801 * 300.00442 * 9 8 6 38 38 H 1.09001 * 109.46998 * 60.00038 * 9 8 6 39 39 H 1.07996 * 126.12674 * 359.95260 * 11 10 9 40 40 H 1.07991 * 126.03991 * 179.97438 * 12 11 10 41 41 H 1.07995 * 125.89972 * 179.97438 * 13 12 11 42 42 H 1.09004 * 109.46531 * 60.00333 * 16 15 2 43 43 H 1.08995 * 109.47179 * 180.02562 * 16 15 2 44 44 H 1.08998 * 109.47071 * 300.00588 * 16 15 2 45 45 H 1.08994 * 109.47301 * 309.99832 * 17 15 2 46 46 H 1.09002 * 109.47017 * 70.00092 * 17 15 2 47 47 H 0.97003 * 119.99882 * 0.02562 * 20 18 17 48 48 H 0.96997 * 120.00169 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 7 3.5000 -0.8265 -1.1905 6 6 4.1730 -1.4293 -2.1906 7 8 3.5699 -1.8844 -3.1393 8 6 5.6749 -1.5370 -2.1305 9 6 6.1849 -2.2584 -3.3797 10 7 7.6449 -2.3636 -3.3209 11 6 8.3634 -3.5019 -3.4172 12 6 9.6722 -3.1732 -3.3164 13 6 9.7565 -1.7866 -3.1535 14 7 8.5422 -1.2996 -3.1620 15 7 2.0196 -0.6925 1.1995 16 6 1.5282 -2.0761 1.2461 17 6 1.6486 0.0392 2.4181 18 6 2.3678 -0.5571 3.6005 19 8 3.1161 -1.4987 3.4436 20 7 2.1802 -0.0435 4.8324 21 6 2.8348 -0.5856 5.9081 22 1 3.5005 -1.4246 5.7684 23 6 2.6410 -0.0564 7.1782 24 7 1.8307 0.9640 7.3482 25 14 3.5335 -0.7947 8.6438 26 1 4.9999 -0.6934 8.4328 27 1 3.1588 -0.0547 9.8756 28 1 3.1517 -2.2225 8.7880 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.7516 -0.1584 -2.1369 33 1 1.6053 -1.7199 -1.2950 34 1 3.9824 -0.4628 -0.4315 35 1 5.9636 -2.0992 -1.2424 36 1 6.1092 -0.5383 -2.0854 37 1 5.7505 -3.2571 -3.4252 38 1 5.8962 -1.6958 -4.2675 39 1 7.9652 -4.4968 -3.5505 40 1 10.5046 -3.8602 -3.3549 41 1 10.6668 -1.2160 -3.0438 42 1 1.8762 -2.6150 0.3648 43 1 1.9052 -2.5655 2.1440 44 1 0.4384 -2.0742 1.2640 45 1 1.9297 1.0870 2.3125 46 1 0.5722 -0.0344 2.5726 47 1 1.5821 0.7098 4.9579 48 1 1.6957 1.3336 8.2348 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674896273.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:01 Heat of formation + Delta-G solvation = 15.221316 kcal Electronic energy + Delta-G solvation = -28631.341556 eV Core-core repulsion = 24530.529140 eV Total energy + Delta-G solvation = -4100.812416 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.31803 -39.97807 -38.92600 -37.37509 -34.60877 -34.32669 -33.84895 -31.36518 -31.17446 -30.57612 -29.71945 -27.99337 -26.64687 -25.43533 -24.45337 -23.66390 -21.31254 -20.92826 -20.37064 -19.87689 -19.11668 -17.87732 -17.77651 -16.81894 -16.48761 -16.20971 -16.09295 -15.37945 -15.07394 -14.83499 -14.68873 -14.49483 -14.13055 -14.12411 -13.70122 -13.53968 -13.34648 -13.14963 -13.04067 -12.97311 -12.71302 -12.45079 -12.32192 -11.91410 -11.81071 -11.62300 -11.48906 -11.27107 -11.24235 -10.95996 -10.82887 -10.79327 -10.47141 -10.24967 -10.06450 -9.63085 -9.50369 -9.09587 -8.80553 -8.52518 -8.02535 -7.91613 -6.45303 -3.86272 1.69619 2.23787 2.51648 2.66764 3.15771 3.17174 3.23403 3.27422 3.85447 3.90618 4.20288 4.27115 4.49921 4.61226 4.63812 4.72576 4.86855 4.94493 5.07564 5.09306 5.16428 5.21843 5.23831 5.39186 5.45167 5.47658 5.51496 5.55673 5.60656 5.68039 5.72807 5.80990 5.84989 5.86580 5.94274 6.11660 6.23120 6.37867 6.44983 6.51384 6.78561 7.16555 7.28458 7.47083 7.50838 7.51447 8.02178 8.11832 8.57653 9.14347 9.50406 10.01957 10.72255 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009965 B = 0.002325 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2809.113206 B =12038.179028 C =14330.374784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.063 3.937 3 H 0.089 0.911 4 C 0.131 3.869 5 N -0.710 5.710 6 C 0.519 3.481 7 O -0.556 6.556 8 C -0.154 4.154 9 C 0.152 3.848 10 N -0.372 5.372 11 C 0.055 3.945 12 C -0.278 4.278 13 C 0.043 3.957 14 N -0.296 5.296 15 N -0.511 5.511 16 C 0.016 3.984 17 C 0.044 3.956 18 C 0.443 3.557 19 O -0.578 6.578 20 N -0.563 5.563 21 C -0.299 4.299 22 H 0.102 0.898 23 C 0.023 3.977 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.274 1.274 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.414 0.586 35 H 0.102 0.898 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.093 0.907 39 H 0.173 0.827 40 H 0.146 0.854 41 H 0.182 0.818 42 H 0.060 0.940 43 H 0.095 0.905 44 H 0.020 0.980 45 H 0.087 0.913 46 H 0.050 0.950 47 H 0.392 0.608 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.578 -2.956 -19.940 20.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.046 4.046 3 H 0.107 0.893 4 C 0.006 3.994 5 N -0.361 5.361 6 C 0.305 3.695 7 O -0.435 6.435 8 C -0.195 4.195 9 C 0.030 3.970 10 N -0.155 5.155 11 C -0.091 4.091 12 C -0.307 4.307 13 C -0.143 4.143 14 N -0.118 5.118 15 N -0.235 5.235 16 C -0.131 4.131 17 C -0.087 4.087 18 C 0.228 3.772 19 O -0.463 6.463 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.251 0.749 35 H 0.120 0.880 36 H 0.126 0.874 37 H 0.122 0.878 38 H 0.111 0.889 39 H 0.190 0.810 40 H 0.164 0.836 41 H 0.199 0.801 42 H 0.078 0.922 43 H 0.114 0.886 44 H 0.039 0.961 45 H 0.105 0.895 46 H 0.068 0.932 47 H 0.225 0.775 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.229 -2.757 -20.468 21.081 hybrid contribution -0.195 -0.357 1.359 1.418 sum 4.034 -3.114 -19.109 19.777 Atomic orbital electron populations 1.22404 0.96567 1.02844 1.02737 1.22055 0.93540 0.98687 0.90366 0.89305 1.21401 0.80134 1.00976 0.96842 1.45846 1.07822 1.58896 1.23531 1.20284 0.89281 0.77639 0.82334 1.90700 1.70511 1.48634 1.33668 1.21866 0.92927 1.04635 1.00029 1.21409 0.73321 1.03412 0.98814 1.48797 1.06528 1.04514 1.55641 1.22618 0.92476 0.92469 1.01524 1.21524 0.96327 0.96124 1.16760 1.23906 0.95979 0.94526 0.99872 1.77343 0.99436 1.11260 1.23746 1.61828 1.58913 1.02505 1.00213 1.22598 0.96793 0.89434 1.04301 1.21877 0.98163 0.98415 0.90223 1.19724 0.86738 0.86943 0.83773 1.90485 1.40798 1.30252 1.84737 1.41864 1.41457 1.31140 1.05532 1.19631 1.23511 1.14861 0.84898 0.87989 1.25257 0.97285 0.96317 0.99033 1.69596 1.36569 1.23815 1.24311 0.85927 0.79657 0.78895 0.79804 1.19865 1.20973 1.19933 0.91889 0.91816 0.91625 0.91189 0.91323 0.74933 0.87961 0.87402 0.87792 0.88927 0.80953 0.83602 0.80101 0.92159 0.88615 0.96147 0.89461 0.93170 0.77520 0.91798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.82 8.50 37.15 0.32 -1.51 16 2 C 0.06 0.69 2.50 -67.71 -0.17 0.52 16 3 H 0.09 0.91 8.03 -51.93 -0.42 0.50 16 4 C 0.13 1.43 4.69 -4.04 -0.02 1.41 16 5 N -0.71 -8.00 5.39 -60.29 -0.32 -8.33 16 6 C 0.52 6.06 7.83 -10.99 -0.09 5.97 16 7 O -0.56 -7.97 15.98 5.56 0.09 -7.88 16 8 C -0.15 -1.50 5.89 -27.88 -0.16 -1.66 16 9 C 0.15 1.41 5.80 -4.04 -0.02 1.39 16 10 N -0.37 -3.87 3.68 -61.36 -0.23 -4.10 16 11 C 0.06 0.48 11.45 -17.22 -0.20 0.29 16 12 C -0.28 -2.42 10.80 -40.01 -0.43 -2.85 16 13 C 0.04 0.42 12.03 -17.36 -0.21 0.21 16 14 N -0.30 -3.52 12.42 30.62 0.38 -3.14 16 15 N -0.51 -7.40 3.93 -236.33 -0.93 -8.33 16 16 C 0.02 0.25 8.46 60.06 0.51 0.76 16 17 C 0.04 0.72 4.89 -4.97 -0.02 0.70 16 18 C 0.44 9.87 7.47 -10.98 -0.08 9.78 16 19 O -0.58 -14.72 13.91 5.55 0.08 -14.65 16 20 N -0.56 -13.76 5.29 -10.96 -0.06 -13.82 16 21 C -0.30 -8.13 9.68 -14.94 -0.14 -8.28 16 22 H 0.10 2.91 7.16 -52.49 -0.38 2.53 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.08 13.05 55.50 0.72 -23.36 16 25 Si 0.93 20.73 29.55 -169.99 -5.02 15.70 16 26 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 27 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 28 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.65 6.38 -51.93 -0.33 0.32 16 31 H 0.06 0.67 6.75 -51.93 -0.35 0.32 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.82 6.70 -51.93 -0.35 0.47 16 34 H 0.41 4.70 8.14 -40.82 -0.33 4.37 16 35 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.10 0.84 8.03 -51.93 -0.42 0.43 16 38 H 0.09 0.89 8.10 -51.93 -0.42 0.47 16 39 H 0.17 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.18 1.22 8.06 -52.49 -0.42 0.80 16 42 H 0.06 0.85 6.44 -51.93 -0.33 0.51 16 43 H 0.10 1.81 5.82 -51.93 -0.30 1.51 16 44 H 0.02 0.28 6.28 -51.93 -0.33 -0.05 16 45 H 0.09 1.28 8.00 -51.93 -0.42 0.86 16 46 H 0.05 0.76 6.94 -51.93 -0.36 0.40 16 47 H 0.39 9.18 7.90 -40.82 -0.32 8.86 16 48 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 395.72 15.07 5.96 5.96 Total: -1.00 -33.03 395.72 -7.30 -40.33 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: -7.15 Total: 14.37 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: -0.82 Total: 7.24 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: -0.43 Total: -61.08 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: 0.17 Total: -22.52 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.03 -7.30 -40.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674896273.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.553 kcal (2) G-P(sol) polarization free energy of solvation -33.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds