Wall clock time and date at job start Tue Mar 31 2020 20:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.47417 * 2 1 4 4 C 1.53006 * 109.47149 * 239.99568 * 2 1 3 5 5 N 1.46504 * 109.46883 * 184.99990 * 4 2 1 6 6 C 1.34776 * 119.99735 * 179.97438 * 5 4 2 7 7 O 1.21282 * 119.99940 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00035 * 179.97438 * 6 5 4 9 9 C 1.53006 * 109.47184 * 180.02562 * 8 6 5 10 10 N 1.46496 * 109.46995 * 180.02562 * 9 8 6 11 11 C 1.34951 * 126.03649 * 125.00636 * 10 9 8 12 12 C 1.35317 * 107.74641 * 179.97438 * 11 10 9 13 13 C 1.39874 * 107.92038 * 359.97438 * 12 11 10 14 14 N 1.30835 * 108.20038 * 359.74226 * 13 12 11 15 15 N 1.46905 * 109.47135 * 120.00079 * 2 1 3 16 16 C 1.46899 * 111.00124 * 58.94942 * 15 2 1 17 17 C 1.46903 * 110.99620 * 294.99743 * 15 2 1 18 18 C 1.50700 * 109.46823 * 189.99701 * 17 15 2 19 19 O 1.21292 * 120.00411 * 0.02562 * 18 17 15 20 20 N 1.34779 * 119.99896 * 179.97438 * 18 17 15 21 21 C 1.37094 * 120.00051 * 180.02562 * 20 18 17 22 22 H 1.07997 * 120.00008 * 359.97438 * 21 20 18 23 23 C 1.38949 * 119.99694 * 180.02562 * 21 20 18 24 24 N 1.31407 * 120.00498 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 119.99794 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47316 * 59.99342 * 25 23 21 27 27 H 1.48497 * 109.47032 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47055 * 299.99681 * 25 23 21 29 29 H 1.09007 * 109.47202 * 60.00035 * 1 2 3 30 30 H 1.09000 * 109.47417 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47186 * 300.00305 * 1 2 3 32 32 H 1.08998 * 109.46509 * 65.00496 * 4 2 1 33 33 H 1.08993 * 109.46955 * 305.00056 * 4 2 1 34 34 H 0.96998 * 120.00303 * 0.02562 * 5 4 2 35 35 H 1.09001 * 109.46665 * 60.00498 * 8 6 5 36 36 H 1.08993 * 109.47304 * 300.00054 * 8 6 5 37 37 H 1.09001 * 109.46801 * 300.00442 * 9 8 6 38 38 H 1.09001 * 109.46998 * 60.00038 * 9 8 6 39 39 H 1.07996 * 126.12674 * 359.95260 * 11 10 9 40 40 H 1.07991 * 126.03991 * 179.97438 * 12 11 10 41 41 H 1.07995 * 125.89972 * 179.97438 * 13 12 11 42 42 H 1.09004 * 109.46531 * 60.00333 * 16 15 2 43 43 H 1.08995 * 109.47179 * 180.02562 * 16 15 2 44 44 H 1.08998 * 109.47071 * 300.00588 * 16 15 2 45 45 H 1.08994 * 109.47301 * 309.99832 * 17 15 2 46 46 H 1.09002 * 109.47017 * 70.00092 * 17 15 2 47 47 H 0.97003 * 119.99882 * 0.02562 * 20 18 17 48 48 H 0.96997 * 120.00169 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 7 3.5000 -0.8265 -1.1905 6 6 4.1730 -1.4293 -2.1906 7 8 3.5699 -1.8844 -3.1393 8 6 5.6749 -1.5370 -2.1305 9 6 6.1849 -2.2584 -3.3797 10 7 7.6449 -2.3636 -3.3209 11 6 8.3634 -3.5019 -3.4172 12 6 9.6722 -3.1732 -3.3164 13 6 9.7565 -1.7866 -3.1535 14 7 8.5422 -1.2996 -3.1620 15 7 2.0196 -0.6925 1.1995 16 6 1.5282 -2.0761 1.2461 17 6 1.6486 0.0392 2.4181 18 6 2.3678 -0.5571 3.6005 19 8 3.1161 -1.4987 3.4436 20 7 2.1802 -0.0435 4.8324 21 6 2.8348 -0.5856 5.9081 22 1 3.5005 -1.4246 5.7684 23 6 2.6410 -0.0564 7.1782 24 7 1.8307 0.9640 7.3482 25 14 3.5335 -0.7947 8.6438 26 1 4.9999 -0.6934 8.4328 27 1 3.1588 -0.0547 9.8756 28 1 3.1517 -2.2225 8.7880 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.7516 -0.1584 -2.1369 33 1 1.6053 -1.7199 -1.2950 34 1 3.9824 -0.4628 -0.4315 35 1 5.9636 -2.0992 -1.2424 36 1 6.1092 -0.5383 -2.0854 37 1 5.7505 -3.2571 -3.4252 38 1 5.8962 -1.6958 -4.2675 39 1 7.9652 -4.4968 -3.5505 40 1 10.5046 -3.8602 -3.3549 41 1 10.6668 -1.2160 -3.0438 42 1 1.8762 -2.6150 0.3648 43 1 1.9052 -2.5655 2.1440 44 1 0.4384 -2.0742 1.2640 45 1 1.9297 1.0870 2.3125 46 1 0.5722 -0.0344 2.5726 47 1 1.5821 0.7098 4.9579 48 1 1.6957 1.3336 8.2348 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674896273.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:00 Heat of formation + Delta-G solvation = -9.534324 kcal Electronic energy + Delta-G solvation = -28632.415041 eV Core-core repulsion = 24530.529140 eV Total energy + Delta-G solvation = -4101.885901 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.02291 -40.99374 -40.34310 -38.78408 -35.99051 -35.36825 -35.17301 -33.25532 -32.24202 -31.35638 -30.46082 -29.36829 -27.51333 -27.01099 -25.59149 -24.82983 -22.00113 -21.69837 -21.43084 -21.00571 -20.58292 -19.79105 -18.56936 -18.04643 -17.41595 -17.19862 -17.09358 -16.66063 -16.48185 -16.26664 -15.85974 -15.71764 -15.21368 -15.19032 -14.90400 -14.79862 -14.31759 -14.22385 -14.04100 -13.74329 -13.63632 -13.56020 -13.43577 -13.22000 -13.05597 -12.89317 -12.79278 -12.44528 -12.41685 -12.38087 -12.26276 -12.12498 -11.76207 -11.55473 -11.42324 -11.03751 -10.38520 -10.25512 -10.03865 -9.97395 -9.50266 -9.18199 -8.44785 -5.92748 0.99834 1.39949 1.42002 1.52216 1.53305 1.58141 1.98925 2.09455 2.26418 2.31217 2.77260 3.22663 3.45304 3.55067 3.70541 3.74582 3.88645 4.07226 4.11385 4.19179 4.26531 4.30613 4.34206 4.35631 4.52609 4.54517 4.58172 4.63330 4.67096 4.72591 4.78335 4.85196 4.86295 4.93239 5.01638 5.18493 5.20059 5.30292 5.42613 5.46780 5.78119 5.88368 6.07260 6.13453 6.20133 6.53939 6.63398 6.79444 7.15779 7.18838 7.60340 8.16263 8.72315 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009965 B = 0.002325 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2809.113206 B =12038.179028 C =14330.374784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.069 3.931 3 H 0.103 0.897 4 C 0.133 3.867 5 N -0.708 5.708 6 C 0.521 3.479 7 O -0.582 6.582 8 C -0.142 4.142 9 C 0.154 3.846 10 N -0.383 5.383 11 C 0.051 3.949 12 C -0.286 4.286 13 C 0.035 3.965 14 N -0.338 5.338 15 N -0.522 5.522 16 C 0.026 3.974 17 C 0.058 3.942 18 C 0.442 3.558 19 O -0.613 6.613 20 N -0.576 5.576 21 C -0.329 4.329 22 H 0.078 0.922 23 C -0.013 4.013 24 N -0.921 5.921 25 Si 0.989 3.011 26 H -0.272 1.272 27 H -0.272 1.272 28 H -0.273 1.273 29 H 0.083 0.917 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.059 0.941 34 H 0.414 0.586 35 H 0.102 0.898 36 H 0.107 0.893 37 H 0.116 0.884 38 H 0.086 0.914 39 H 0.203 0.797 40 H 0.168 0.832 41 H 0.204 0.796 42 H 0.068 0.932 43 H 0.054 0.946 44 H 0.035 0.965 45 H 0.111 0.889 46 H 0.068 0.932 47 H 0.395 0.605 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.440 -2.743 -20.632 21.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.039 4.039 3 H 0.121 0.879 4 C 0.009 3.991 5 N -0.359 5.359 6 C 0.308 3.692 7 O -0.463 6.463 8 C -0.183 4.183 9 C 0.033 3.967 10 N -0.165 5.165 11 C -0.095 4.095 12 C -0.315 4.315 13 C -0.150 4.150 14 N -0.160 5.160 15 N -0.246 5.246 16 C -0.122 4.122 17 C -0.073 4.073 18 C 0.230 3.770 19 O -0.499 6.499 20 N -0.214 5.214 21 C -0.459 4.459 22 H 0.096 0.904 23 C -0.213 4.213 24 N -0.562 5.562 25 Si 0.813 3.187 26 H -0.198 1.198 27 H -0.197 1.197 28 H -0.198 1.198 29 H 0.102 0.898 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.078 0.922 34 H 0.251 0.749 35 H 0.120 0.880 36 H 0.125 0.875 37 H 0.134 0.866 38 H 0.104 0.896 39 H 0.220 0.780 40 H 0.185 0.815 41 H 0.220 0.780 42 H 0.087 0.913 43 H 0.072 0.928 44 H 0.053 0.947 45 H 0.129 0.871 46 H 0.086 0.914 47 H 0.229 0.771 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.079 -2.523 -21.170 21.706 hybrid contribution -0.128 -0.459 1.480 1.554 sum 3.951 -2.982 -19.690 20.303 Atomic orbital electron populations 1.22370 0.95163 1.02874 1.03756 1.22101 0.94592 0.98817 0.88382 0.87851 1.21423 0.79798 1.00670 0.97237 1.45897 1.08132 1.58526 1.23336 1.20517 0.89877 0.77006 0.81848 1.90685 1.71162 1.49842 1.34655 1.21756 0.91534 1.04683 1.00329 1.21393 0.73237 1.03918 0.98145 1.48890 1.06658 1.04817 1.56181 1.23227 0.92621 0.93231 1.00416 1.21888 0.97131 0.96075 1.16434 1.24425 0.96192 0.95497 0.98917 1.77284 1.00486 1.12656 1.25590 1.61751 1.59821 1.02311 1.00727 1.22399 0.97501 0.89764 1.02536 1.21733 0.98174 0.99073 0.88310 1.20811 0.85744 0.85885 0.84603 1.90470 1.42217 1.31707 1.85470 1.41939 1.41931 1.31626 1.05899 1.19580 1.24536 1.15209 0.86571 0.90369 1.25983 0.97798 0.96576 1.00946 1.69657 1.37136 1.24370 1.25061 0.85042 0.78444 0.78193 0.77000 1.19766 1.19658 1.19825 0.89795 0.92282 0.91694 0.90027 0.92229 0.74905 0.88019 0.87479 0.86573 0.89560 0.78015 0.81463 0.77981 0.91326 0.92768 0.94686 0.87065 0.91369 0.77101 0.91410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.03 8.50 71.98 0.61 -2.42 16 2 C 0.07 1.35 2.50 44.91 0.11 1.46 16 3 H 0.10 1.78 8.03 -2.39 -0.02 1.76 16 4 C 0.13 2.66 4.69 86.38 0.40 3.06 16 5 N -0.71 -15.20 5.39 -463.05 -2.50 -17.70 16 6 C 0.52 11.82 7.83 87.66 0.69 12.50 16 7 O -0.58 -16.28 15.98 -3.04 -0.05 -16.33 16 8 C -0.14 -2.73 5.89 29.85 0.18 -2.55 16 9 C 0.15 2.81 5.80 86.38 0.50 3.31 16 10 N -0.38 -7.73 3.68 -348.06 -1.28 -9.01 16 11 C 0.05 0.82 11.45 83.54 0.96 1.77 16 12 C -0.29 -4.58 10.80 21.99 0.24 -4.34 16 13 C 0.04 0.66 12.03 85.24 1.03 1.68 16 14 N -0.34 -7.97 12.42 -57.03 -0.71 -8.68 16 15 N -0.52 -14.38 3.93 -901.61 -3.54 -17.92 16 16 C 0.03 0.77 8.46 127.69 1.08 1.85 16 17 C 0.06 1.80 4.89 85.56 0.42 2.22 16 18 C 0.44 19.82 7.47 87.66 0.66 20.47 16 19 O -0.61 -31.96 13.91 -3.07 -0.04 -32.00 16 20 N -0.58 -28.51 5.29 -306.99 -1.62 -30.14 16 21 C -0.33 -18.26 9.68 84.04 0.81 -17.45 16 22 H 0.08 4.63 7.16 -2.91 -0.02 4.60 16 23 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 24 N -0.92 -48.99 13.05 21.66 0.28 -48.71 16 25 Si 0.99 42.45 29.55 68.60 2.03 44.48 16 26 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 27 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 28 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 29 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 30 H 0.06 1.05 6.38 -2.39 -0.02 1.03 16 31 H 0.06 1.11 6.75 -2.39 -0.02 1.10 16 32 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.06 1.33 6.70 -2.39 -0.02 1.31 16 34 H 0.41 9.00 8.14 -92.71 -0.75 8.24 16 35 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.12 1.78 8.03 -2.39 -0.02 1.76 16 38 H 0.09 1.66 8.10 -2.39 -0.02 1.64 16 39 H 0.20 1.76 8.06 -2.91 -0.02 1.74 16 40 H 0.17 1.81 8.06 -2.92 -0.02 1.78 16 41 H 0.20 2.53 8.06 -2.91 -0.02 2.51 16 42 H 0.07 1.88 6.44 -2.39 -0.02 1.87 16 43 H 0.05 2.08 5.82 -2.39 -0.01 2.07 16 44 H 0.03 0.92 6.28 -2.39 -0.01 0.90 16 45 H 0.11 2.97 8.00 -2.39 -0.02 2.95 16 46 H 0.07 1.91 6.94 -2.39 -0.02 1.90 16 47 H 0.40 18.61 7.90 -92.71 -0.73 17.88 16 48 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 Total: -1.00 -72.31 395.72 0.22 -72.09 By element: Atomic # 1 Polarization: 43.07 SS G_CDS: -0.49 Total: 42.58 kcal Atomic # 6 Polarization: 13.20 SS G_CDS: 8.14 Total: 21.34 kcal Atomic # 7 Polarization: -122.79 SS G_CDS: -9.37 Total: -132.16 kcal Atomic # 8 Polarization: -48.24 SS G_CDS: -0.09 Total: -48.33 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -72.31 0.22 -72.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674896273.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.553 kcal (2) G-P(sol) polarization free energy of solvation -72.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds