Wall clock time and date at job start Tue Mar 31 2020 20:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.46914 * 2 1 4 4 C 1.52993 * 109.47091 * 120.00503 * 2 1 3 5 5 N 1.46502 * 109.47491 * 65.67100 * 4 2 1 6 6 C 1.34778 * 120.00020 * 176.48064 * 5 4 2 7 7 O 1.21290 * 119.99968 * 359.72922 * 6 5 4 8 8 C 1.50697 * 120.00044 * 179.72873 * 6 5 4 9 9 C 1.53002 * 109.47241 * 180.02562 * 8 6 5 10 10 N 1.46501 * 109.47084 * 179.97438 * 9 8 6 11 11 C 1.34948 * 126.03399 * 124.99579 * 10 9 8 12 12 C 1.35320 * 107.74242 * 179.97438 * 11 10 9 13 13 C 1.39867 * 107.91930 * 0.02562 * 12 11 10 14 14 N 1.30836 * 108.20617 * 359.74094 * 13 12 11 15 15 N 1.46899 * 109.46795 * 240.00258 * 2 1 3 16 16 C 1.46896 * 111.00004 * 184.09665 * 15 2 1 17 17 C 1.46896 * 111.00399 * 60.14111 * 15 2 1 18 18 C 1.50700 * 109.47639 * 189.99805 * 17 15 2 19 19 O 1.21294 * 119.99771 * 0.02562 * 18 17 15 20 20 N 1.34774 * 120.00312 * 179.97438 * 18 17 15 21 21 C 1.37097 * 119.99974 * 180.02562 * 20 18 17 22 22 H 1.07996 * 120.00388 * 0.02562 * 21 20 18 23 23 C 1.38956 * 119.99880 * 180.02562 * 21 20 18 24 24 N 1.31409 * 119.99613 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99752 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47344 * 359.97438 * 25 23 21 27 27 H 1.48504 * 109.47109 * 119.99568 * 25 23 21 28 28 H 1.48498 * 109.46943 * 239.99464 * 25 23 21 29 29 H 1.08993 * 109.46806 * 299.99948 * 1 2 3 30 30 H 1.08997 * 109.47203 * 59.99985 * 1 2 3 31 31 H 1.08997 * 109.46914 * 179.97438 * 1 2 3 32 32 H 1.09009 * 109.47345 * 305.66904 * 4 2 1 33 33 H 1.08998 * 109.47255 * 185.67405 * 4 2 1 34 34 H 0.96994 * 119.99900 * 356.21355 * 5 4 2 35 35 H 1.09004 * 109.46665 * 300.00107 * 8 6 5 36 36 H 1.08994 * 109.47228 * 59.99768 * 8 6 5 37 37 H 1.09008 * 109.46514 * 299.99488 * 9 8 6 38 38 H 1.09003 * 109.47521 * 59.99234 * 9 8 6 39 39 H 1.07997 * 126.12928 * 359.95837 * 11 10 9 40 40 H 1.07996 * 126.04164 * 180.02562 * 12 11 10 41 41 H 1.08000 * 125.90078 * 179.97438 * 13 12 11 42 42 H 1.08999 * 109.47401 * 66.53784 * 16 15 2 43 43 H 1.08998 * 109.47425 * 186.54026 * 16 15 2 44 44 H 1.09004 * 109.47046 * 306.53531 * 16 15 2 45 45 H 1.09004 * 109.47006 * 309.99851 * 17 15 2 46 46 H 1.09005 * 109.47382 * 69.99706 * 17 15 2 47 47 H 0.97003 * 119.99980 * 0.02562 * 20 18 17 48 48 H 0.97005 * 119.99404 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 1.6664 -2.1363 1.1828 6 6 2.0730 -2.9866 2.1462 7 8 2.7525 -2.5812 3.0656 8 6 1.6835 -4.4409 2.0812 9 6 2.2690 -5.1801 3.2862 10 7 1.8898 -6.5938 3.2233 11 6 2.7359 -7.6447 3.2528 12 6 1.9940 -8.7736 3.1734 13 6 0.6487 -8.3998 3.0921 14 7 0.5847 -7.0934 3.1271 15 7 2.0197 -0.6924 -1.1995 16 6 3.4848 -0.7975 -1.1855 17 6 1.5514 -0.0244 -2.4211 18 6 1.8603 -0.8887 -3.6163 19 8 2.4155 -1.9565 -3.4653 20 7 1.5188 -0.4757 -4.8529 21 6 1.7994 -1.2623 -5.9402 22 1 2.2937 -2.2130 -5.8058 23 6 1.4477 -0.8362 -7.2152 24 7 0.8457 0.3204 -7.3787 25 14 1.8294 -1.9083 -8.6965 26 1 2.5053 -3.1516 -8.2468 27 1 0.5656 -2.2562 -9.3946 28 1 2.7209 -1.1691 -9.6260 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.5962 -0.2695 2.1363 33 1 3.1253 -0.6342 1.3014 34 1 1.1231 -2.4605 0.4476 35 1 0.5970 -4.5270 2.0954 36 1 2.0708 -4.8800 1.1619 37 1 3.3556 -5.0940 3.2723 38 1 1.8814 -4.7408 4.2054 39 1 3.8121 -7.5938 3.3263 40 1 2.3737 -9.7847 3.1730 41 1 -0.1923 -9.0732 3.0174 42 1 3.7943 -1.4537 -0.3721 43 1 3.8287 -1.2085 -2.1347 44 1 3.9186 0.1917 -1.0395 45 1 0.4752 0.1365 -2.3575 46 1 2.0567 0.9357 -2.5267 47 1 1.0744 0.3781 -4.9737 48 1 0.5999 0.6176 -8.2688 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674896274.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:03 Heat of formation + Delta-G solvation = 16.335869 kcal Electronic energy + Delta-G solvation = -28739.921431 eV Core-core repulsion = 24639.157346 eV Total energy + Delta-G solvation = -4100.764085 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.32319 -40.00760 -38.84527 -37.31540 -34.59758 -34.34038 -33.80189 -31.36656 -31.26735 -30.60812 -29.75719 -28.48410 -26.38397 -24.95620 -24.53628 -23.59889 -21.33269 -21.06534 -20.32905 -20.02028 -19.12757 -17.93369 -17.80491 -16.86396 -16.56248 -16.09405 -15.88115 -15.50196 -14.90334 -14.82198 -14.72393 -14.50733 -14.15789 -14.01383 -13.83660 -13.56723 -13.43549 -13.20411 -13.09795 -12.95466 -12.52091 -12.45846 -12.27518 -11.97127 -11.67081 -11.64456 -11.52036 -11.38375 -11.26216 -10.97552 -10.83510 -10.65029 -10.37404 -10.26056 -10.07313 -9.63529 -9.52314 -9.09777 -8.80955 -8.50875 -8.03478 -7.94889 -6.45642 -3.86406 1.69191 2.23372 2.51138 2.66330 3.13343 3.16172 3.24370 3.31179 3.84743 3.88926 4.19695 4.26681 4.49327 4.60337 4.63637 4.73250 4.84897 4.90537 5.06196 5.09462 5.17399 5.22949 5.23098 5.43974 5.45314 5.51757 5.55080 5.60073 5.61318 5.66720 5.72327 5.80615 5.84171 5.92404 5.95356 6.14943 6.24624 6.36139 6.44516 6.47813 6.78126 7.16894 7.28401 7.45898 7.50305 7.51727 8.02546 8.11088 8.57451 9.14418 9.50437 10.01817 10.72091 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010818 B = 0.002288 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2587.739813 B =12235.154081 C =14127.950565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.063 3.937 3 H 0.055 0.945 4 C 0.130 3.870 5 N -0.707 5.707 6 C 0.519 3.481 7 O -0.555 6.555 8 C -0.154 4.154 9 C 0.152 3.848 10 N -0.372 5.372 11 C 0.056 3.944 12 C -0.278 4.278 13 C 0.043 3.957 14 N -0.297 5.297 15 N -0.513 5.513 16 C 0.022 3.978 17 C 0.041 3.959 18 C 0.444 3.556 19 O -0.578 6.578 20 N -0.564 5.564 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.901 5.901 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.413 0.587 35 H 0.107 0.893 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.092 0.908 39 H 0.173 0.827 40 H 0.146 0.854 41 H 0.182 0.818 42 H 0.061 0.939 43 H 0.094 0.906 44 H 0.014 0.986 45 H 0.093 0.907 46 H 0.047 0.953 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.305 -6.298 20.008 20.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.046 4.046 3 H 0.073 0.927 4 C 0.005 3.995 5 N -0.360 5.360 6 C 0.305 3.695 7 O -0.435 6.435 8 C -0.195 4.195 9 C 0.030 3.970 10 N -0.155 5.155 11 C -0.091 4.091 12 C -0.307 4.307 13 C -0.143 4.143 14 N -0.118 5.118 15 N -0.238 5.238 16 C -0.126 4.126 17 C -0.090 4.090 18 C 0.229 3.771 19 O -0.462 6.462 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.208 1.208 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.250 0.750 35 H 0.126 0.874 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.111 0.889 39 H 0.191 0.809 40 H 0.164 0.836 41 H 0.199 0.801 42 H 0.080 0.920 43 H 0.113 0.887 44 H 0.033 0.967 45 H 0.111 0.889 46 H 0.065 0.935 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.188 -5.918 20.562 21.397 hybrid contribution 0.513 0.093 -1.384 1.479 sum 0.700 -5.825 19.178 20.055 Atomic orbital electron populations 1.21930 0.93825 1.02859 1.02072 1.21982 0.96346 0.95996 0.90260 0.92739 1.21390 1.00439 0.80821 0.96823 1.45851 1.54421 1.08891 1.26799 1.20285 0.79628 0.87681 0.81955 1.90703 1.39186 1.78996 1.34584 1.21865 1.04568 0.92587 1.00443 1.21410 1.01148 0.75186 0.99210 1.48796 1.04258 1.06285 1.56131 1.22621 0.97547 0.87367 1.01536 1.21524 0.93072 0.99130 1.17007 1.23903 0.97868 0.92606 0.99909 1.77340 0.98959 1.11524 1.23986 1.61627 1.11508 1.50733 0.99940 1.22533 0.86388 0.98928 1.04714 1.21952 1.01440 0.95520 0.90124 1.19716 0.85251 0.88336 0.83799 1.90493 1.46497 1.23987 1.85234 1.41879 1.52756 1.20622 1.04822 1.19732 1.36221 1.02782 0.84016 0.87884 1.25265 0.96922 0.96689 0.99103 1.69619 1.40824 1.19848 1.23981 0.85808 0.78109 0.79813 0.80673 1.19221 1.20727 1.20782 0.92085 0.91724 0.91682 0.91193 0.91217 0.74972 0.87432 0.87961 0.87775 0.88934 0.80947 0.83600 0.80107 0.91997 0.88739 0.96716 0.88934 0.93473 0.77532 0.91915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 8.87 37.16 0.33 -1.16 16 2 C 0.06 0.71 2.32 -67.71 -0.16 0.55 16 3 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 4 C 0.13 1.42 4.60 -4.04 -0.02 1.40 16 5 N -0.71 -7.87 5.11 -60.29 -0.31 -8.18 16 6 C 0.52 5.99 7.83 -10.99 -0.09 5.91 16 7 O -0.56 -7.91 15.98 5.55 0.09 -7.82 16 8 C -0.15 -1.48 5.89 -27.88 -0.16 -1.65 16 9 C 0.15 1.41 5.80 -4.04 -0.02 1.38 16 10 N -0.37 -3.85 3.68 -61.36 -0.23 -4.07 16 11 C 0.06 0.48 11.45 -17.22 -0.20 0.29 16 12 C -0.28 -2.41 10.80 -40.01 -0.43 -2.84 16 13 C 0.04 0.42 12.02 -17.37 -0.21 0.21 16 14 N -0.30 -3.50 12.42 30.62 0.38 -3.12 16 15 N -0.51 -7.54 3.83 -236.33 -0.91 -8.44 16 16 C 0.02 0.34 8.57 60.06 0.51 0.85 16 17 C 0.04 0.67 5.26 -4.98 -0.03 0.64 16 18 C 0.44 9.92 7.41 -10.99 -0.08 9.84 16 19 O -0.58 -14.76 13.98 5.55 0.08 -14.68 16 20 N -0.56 -13.81 5.29 -10.96 -0.06 -13.87 16 21 C -0.30 -8.10 9.68 -14.93 -0.14 -8.24 16 22 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.10 13.05 55.50 0.72 -23.37 16 25 Si 0.93 20.73 29.55 -169.99 -5.02 15.70 16 26 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 27 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 28 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.67 6.20 -51.93 -0.32 0.34 16 31 H 0.06 0.67 7.15 -51.93 -0.37 0.30 16 32 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 33 H 0.07 0.83 6.83 -51.93 -0.35 0.48 16 34 H 0.41 4.64 7.29 -40.82 -0.30 4.34 16 35 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.10 0.84 8.03 -51.92 -0.42 0.43 16 38 H 0.09 0.89 8.10 -51.93 -0.42 0.47 16 39 H 0.17 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.15 0.94 8.06 -52.49 -0.42 0.51 16 41 H 0.18 1.20 8.06 -52.49 -0.42 0.78 16 42 H 0.06 0.89 6.74 -51.93 -0.35 0.54 16 43 H 0.09 1.79 5.79 -51.93 -0.30 1.49 16 44 H 0.01 0.20 8.12 -51.93 -0.42 -0.22 16 45 H 0.09 1.37 5.83 -51.93 -0.30 1.07 16 46 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 47 H 0.39 9.20 7.90 -40.82 -0.32 8.88 16 48 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 396.65 15.07 5.98 5.98 Total: -1.00 -33.10 396.65 -7.26 -40.36 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: -7.19 Total: 13.86 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: -0.79 Total: 7.66 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: -0.39 Total: -61.05 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: 0.17 Total: -22.50 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.10 -7.26 -40.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674896274.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.692 kcal (2) G-P(sol) polarization free energy of solvation -33.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds