Wall clock time and date at job start Tue Mar 31 2020 20:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46503 * 109.47618 * 2 1 4 4 C 1.35396 * 126.43763 * 265.02593 * 3 2 1 5 5 C 1.35571 * 107.15829 * 179.97438 * 4 3 2 6 6 N 1.33096 * 108.34810 * 0.26655 * 5 4 3 7 7 C 1.31621 * 109.09881 * 359.56306 * 6 5 4 8 8 C 1.47406 * 125.86719 * 180.16910 * 7 6 5 9 9 O 1.21599 * 119.99912 * 180.30654 * 8 7 6 10 10 N 1.34769 * 120.00014 * 0.31501 * 8 7 6 11 11 C 1.46494 * 120.00206 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.47428 * 179.97438 * 11 10 8 13 13 H 1.08996 * 109.47161 * 64.99843 * 12 11 10 14 14 C 1.53004 * 109.47048 * 184.99978 * 12 11 10 15 15 N 1.46898 * 109.47282 * 304.99924 * 12 11 10 16 16 C 1.46906 * 111.00131 * 298.95586 * 15 12 11 17 17 C 1.46897 * 111.00522 * 174.99789 * 15 12 11 18 18 C 1.50690 * 109.47403 * 190.00067 * 17 15 12 19 19 O 1.21287 * 120.00265 * 359.97438 * 18 17 15 20 20 N 1.34783 * 119.99835 * 180.02562 * 18 17 15 21 21 C 1.37100 * 119.99615 * 180.02562 * 20 18 17 22 22 H 1.07991 * 120.00235 * 359.97438 * 21 20 18 23 23 C 1.38958 * 119.99616 * 179.97438 * 21 20 18 24 24 N 1.31412 * 119.99582 * 179.97438 * 23 21 20 25 25 Si 1.86794 * 120.00067 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47399 * 89.99771 * 25 23 21 27 27 H 1.48494 * 109.47230 * 209.99808 * 25 23 21 28 28 H 1.48507 * 109.47142 * 329.99626 * 25 23 21 29 29 H 1.09003 * 109.47031 * 59.99423 * 1 2 3 30 30 H 1.08988 * 109.47438 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46837 * 300.00139 * 1 2 3 32 32 H 1.09001 * 109.46976 * 240.00387 * 2 1 3 33 33 H 1.08996 * 109.47339 * 120.00363 * 2 1 3 34 34 H 1.08002 * 126.42168 * 359.97438 * 4 3 2 35 35 H 1.08002 * 125.82262 * 179.97438 * 5 4 3 36 36 H 0.97007 * 120.00015 * 359.97438 * 10 8 7 37 37 H 1.08997 * 109.47422 * 299.99530 * 11 10 8 38 38 H 1.08998 * 109.47368 * 59.99722 * 11 10 8 39 39 H 1.08996 * 109.47250 * 59.99920 * 14 12 11 40 40 H 1.09008 * 109.46731 * 180.02562 * 14 12 11 41 41 H 1.08997 * 109.47259 * 299.99613 * 14 12 11 42 42 H 1.08999 * 109.47290 * 59.99439 * 16 15 12 43 43 H 1.08997 * 109.47423 * 180.02562 * 16 15 12 44 44 H 1.09002 * 109.46800 * 300.00186 * 16 15 12 45 45 H 1.09003 * 109.46937 * 310.00487 * 17 15 12 46 46 H 1.09004 * 109.46904 * 70.00042 * 17 15 12 47 47 H 0.96997 * 119.99899 * 359.97438 * 20 18 17 48 48 H 0.97006 * 119.99495 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3756 2.1079 -1.0852 5 6 2.7651 3.3275 -0.6393 6 7 2.6543 3.3437 0.6870 7 6 2.1987 2.1784 1.0954 8 6 1.9344 1.7965 2.4944 9 8 1.5174 0.6838 2.7525 10 7 2.1548 2.6807 3.4873 11 6 1.8926 2.3011 4.8777 12 6 2.2233 3.4773 5.7987 13 1 1.5427 4.3031 5.5920 14 6 2.0691 3.0420 7.2573 15 7 3.6064 3.9115 5.5609 16 6 4.5557 2.8293 5.8537 17 6 3.9222 5.1146 6.3423 18 6 5.2492 5.6707 5.8943 19 8 5.8710 5.1188 5.0112 20 7 5.7455 6.7808 6.4756 21 6 6.9526 7.2870 6.0675 22 1 7.5058 6.7960 5.2807 23 6 7.4641 8.4318 6.6665 24 7 8.6213 8.9166 6.2757 25 14 6.5075 9.2805 8.0281 26 1 6.9081 8.7148 9.3413 27 1 6.8008 10.7360 8.0059 28 1 5.0530 9.0654 7.8194 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0275 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.3542 1.7778 -2.1133 35 1 3.1112 4.1446 -1.2548 36 1 2.4877 3.5683 3.2814 37 1 0.8414 2.0358 4.9900 38 1 2.5136 1.4458 5.1441 39 1 2.7498 2.2162 7.4640 40 1 2.3043 3.8801 7.9134 41 1 1.0429 2.7198 7.4338 42 1 4.3423 1.9750 5.2113 43 1 5.5720 3.1778 5.6698 44 1 4.4572 2.5323 6.8979 45 1 3.1442 5.8624 6.1885 46 1 3.9747 4.8573 7.4003 47 1 5.2485 7.2219 7.1821 48 1 8.9785 9.7156 6.6941 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674920828.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:58 Heat of formation + Delta-G solvation = 9.845318 kcal Electronic energy + Delta-G solvation = -29537.512739 eV Core-core repulsion = 25436.467202 eV Total energy + Delta-G solvation = -4101.045536 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.38763 -39.69712 -38.81333 -37.39111 -35.40396 -34.27454 -33.79740 -31.64866 -31.24671 -30.51813 -29.73553 -28.07764 -26.58024 -25.41246 -24.30628 -23.68965 -22.70291 -21.46171 -20.24093 -19.66449 -19.26803 -18.20873 -17.87371 -16.61529 -16.44650 -16.18370 -15.81191 -15.42365 -14.99625 -14.94560 -14.80384 -14.45860 -14.23694 -14.00181 -13.98856 -13.64479 -13.32831 -13.14376 -13.00911 -12.96209 -12.77646 -12.46534 -12.37388 -12.17435 -11.94807 -11.67413 -11.64086 -11.32389 -11.26728 -10.99875 -10.81311 -10.56813 -10.34126 -10.17879 -9.94273 -9.94080 -9.49824 -9.15052 -8.62451 -8.55050 -8.14422 -7.93057 -6.27554 -3.78568 1.27957 2.28583 2.53105 3.04731 3.08472 3.17001 3.21651 3.40728 3.78258 3.89860 4.13120 4.31124 4.37530 4.59470 4.63635 4.67972 4.81155 4.94149 4.97500 5.14287 5.15597 5.23095 5.23584 5.32575 5.37908 5.44099 5.47587 5.49105 5.62771 5.71348 5.74227 5.80358 5.83266 5.92465 5.99084 6.04960 6.10865 6.36764 6.50109 6.54798 6.77420 7.14805 7.28953 7.42132 7.62110 7.81972 8.13070 8.18926 8.64190 8.99535 9.46508 9.88109 10.85709 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015437 B = 0.002573 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.343387 B =10877.782570 C =12190.779209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.096 3.904 3 N -0.416 5.416 4 C -0.034 4.034 5 C -0.025 4.025 6 N -0.436 5.436 7 C 0.140 3.860 8 C 0.606 3.394 9 O -0.553 6.553 10 N -0.687 5.687 11 C 0.132 3.868 12 C 0.063 3.937 13 H 0.091 0.909 14 C -0.186 4.186 15 N -0.510 5.510 16 C 0.016 3.984 17 C 0.042 3.958 18 C 0.453 3.547 19 O -0.556 6.556 20 N -0.593 5.593 21 C -0.302 4.302 22 H 0.120 0.880 23 C 0.040 3.960 24 N -0.883 5.883 25 Si 0.879 3.121 26 H -0.272 1.272 27 H -0.277 1.277 28 H -0.269 1.269 29 H 0.058 0.942 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.109 0.891 34 H 0.181 0.819 35 H 0.178 0.822 36 H 0.425 0.575 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.096 0.904 44 H 0.021 0.979 45 H 0.089 0.911 46 H 0.051 0.949 47 H 0.369 0.631 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.133 -15.620 -7.254 25.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.025 4.025 3 N -0.097 5.097 4 C -0.172 4.172 5 C -0.179 4.179 6 N -0.157 5.157 7 C -0.119 4.119 8 C 0.390 3.610 9 O -0.431 6.431 10 N -0.338 5.338 11 C 0.008 3.992 12 C -0.046 4.046 13 H 0.109 0.891 14 C -0.245 4.245 15 N -0.233 5.233 16 C -0.132 4.132 17 C -0.089 4.089 18 C 0.239 3.761 19 O -0.437 6.437 20 N -0.233 5.233 21 C -0.431 4.431 22 H 0.137 0.863 23 C -0.163 4.163 24 N -0.523 5.523 25 Si 0.706 3.294 26 H -0.198 1.198 27 H -0.202 1.202 28 H -0.195 1.195 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.109 0.891 33 H 0.127 0.873 34 H 0.198 0.802 35 H 0.195 0.805 36 H 0.263 0.737 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.115 0.885 44 H 0.039 0.961 45 H 0.107 0.893 46 H 0.069 0.931 47 H 0.202 0.798 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -18.654 -16.025 -7.545 25.724 hybrid contribution -0.662 0.479 1.188 1.442 sum -19.316 -15.546 -6.357 25.596 Atomic orbital electron populations 1.22055 0.93677 1.03253 1.02971 1.22089 0.96212 0.78999 1.05247 1.45264 1.45495 1.12774 1.06178 1.22901 1.07190 0.94081 0.92997 1.22479 1.06844 0.97523 0.91034 1.70293 1.14216 1.18622 1.12574 1.22650 1.10334 0.88679 0.90239 1.16428 0.77975 0.84432 0.82149 1.90764 1.47803 1.20772 1.83804 1.45532 1.64951 1.17954 1.05356 1.21460 1.00891 0.97187 0.79634 1.22057 0.91821 0.97306 0.93428 0.89123 1.22406 1.02567 1.02517 0.97021 1.61793 1.00789 1.04859 1.55878 1.22614 0.99139 0.93672 0.97745 1.21909 0.98004 0.93289 0.95734 1.19637 0.87522 0.83128 0.85823 1.90545 1.61013 1.60094 1.32039 1.42214 1.20659 1.25246 1.35139 1.19422 0.94579 1.08961 1.20105 0.86279 1.25036 0.96198 0.96858 0.98159 1.69627 1.17713 1.22917 1.42029 0.86677 0.79894 0.80238 0.82597 1.19761 1.20239 1.19482 0.92335 0.90461 0.91352 0.89127 0.87269 0.80174 0.80498 0.73684 0.90879 0.91028 0.91717 0.91667 0.91832 0.92028 0.88540 0.96093 0.89267 0.93092 0.79806 0.91685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.20 10.23 37.15 0.38 -0.81 16 2 C 0.10 0.80 6.18 -4.04 -0.02 0.77 16 3 N -0.42 -4.60 2.76 -114.59 -0.32 -4.92 16 4 C -0.03 -0.32 11.53 -16.93 -0.20 -0.51 16 5 C -0.03 -0.30 11.85 -17.96 -0.21 -0.51 16 6 N -0.44 -6.51 10.89 -11.26 -0.12 -6.63 16 7 C 0.14 1.96 7.79 -154.52 -1.20 0.76 16 8 C 0.61 8.62 7.81 -12.53 -0.10 8.53 16 9 O -0.55 -8.23 14.51 5.28 0.08 -8.15 16 10 N -0.69 -9.17 5.38 -61.40 -0.33 -9.50 16 11 C 0.13 1.50 4.69 -4.04 -0.02 1.48 16 12 C 0.06 0.70 2.50 -67.71 -0.17 0.53 16 13 H 0.09 0.94 8.03 -51.93 -0.42 0.52 16 14 C -0.19 -1.73 8.50 37.16 0.32 -1.42 16 15 N -0.51 -7.60 3.93 -236.33 -0.93 -8.52 16 16 C 0.02 0.24 8.46 60.07 0.51 0.75 16 17 C 0.04 0.67 4.89 -4.98 -0.02 0.65 16 18 C 0.45 10.10 7.47 -10.99 -0.08 10.02 16 19 O -0.56 -14.62 13.91 5.55 0.08 -14.54 16 20 N -0.59 -14.00 5.09 -10.97 -0.06 -14.06 16 21 C -0.30 -8.52 10.16 -14.93 -0.15 -8.68 16 22 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 23 C 0.04 1.10 5.50 -17.46 -0.10 1.01 16 24 N -0.88 -25.91 13.96 55.50 0.77 -25.13 16 25 Si 0.88 19.39 27.74 -169.99 -4.71 14.67 16 26 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 27 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 28 H -0.27 -5.39 6.52 56.52 0.37 -5.03 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.43 8.14 -51.94 -0.42 0.01 16 31 H 0.07 0.66 7.86 -51.93 -0.41 0.26 16 32 H 0.09 0.50 8.13 -51.93 -0.42 0.07 16 33 H 0.11 1.07 6.64 -51.93 -0.34 0.73 16 34 H 0.18 0.97 8.06 -52.49 -0.42 0.55 16 35 H 0.18 1.63 8.06 -52.49 -0.42 1.21 16 36 H 0.42 6.21 7.82 -40.82 -0.32 5.89 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.86 6.70 -51.93 -0.35 0.51 16 39 H 0.06 0.63 6.39 -51.93 -0.33 0.30 16 40 H 0.06 0.62 6.75 -51.92 -0.35 0.27 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.90 6.44 -51.93 -0.33 0.57 16 43 H 0.10 1.87 5.82 -51.93 -0.30 1.57 16 44 H 0.02 0.28 6.28 -51.93 -0.33 -0.04 16 45 H 0.09 1.25 8.00 -51.93 -0.42 0.84 16 46 H 0.05 0.72 6.94 -51.93 -0.36 0.36 16 47 H 0.37 7.66 5.76 -40.82 -0.24 7.42 16 48 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 388.39 15.07 5.85 5.85 Total: -1.00 -34.96 388.39 -7.77 -42.73 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: -7.01 Total: 15.63 kcal Atomic # 6 Polarization: 13.64 SS G_CDS: -1.07 Total: 12.57 kcal Atomic # 7 Polarization: -67.78 SS G_CDS: -0.98 Total: -68.76 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: 0.15 Total: -22.69 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -4.71 Total: 14.67 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.96 -7.77 -42.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674920828.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.574 kcal (2) G-P(sol) polarization free energy of solvation -34.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds