Wall clock time and date at job start Tue Mar 31 2020 20:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46503 * 109.47618 * 2 1 4 4 C 1.35396 * 126.43763 * 265.02593 * 3 2 1 5 5 C 1.35571 * 107.15829 * 179.97438 * 4 3 2 6 6 N 1.33096 * 108.34810 * 0.26655 * 5 4 3 7 7 C 1.31621 * 109.09881 * 359.56306 * 6 5 4 8 8 C 1.47406 * 125.86719 * 180.16910 * 7 6 5 9 9 O 1.21599 * 119.99912 * 180.30654 * 8 7 6 10 10 N 1.34769 * 120.00014 * 0.31501 * 8 7 6 11 11 C 1.46494 * 120.00206 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.47428 * 179.97438 * 11 10 8 13 13 H 1.08996 * 109.47161 * 64.99843 * 12 11 10 14 14 C 1.53004 * 109.47048 * 184.99978 * 12 11 10 15 15 N 1.46898 * 109.47282 * 304.99924 * 12 11 10 16 16 C 1.46906 * 111.00131 * 298.95586 * 15 12 11 17 17 C 1.46897 * 111.00522 * 174.99789 * 15 12 11 18 18 C 1.50690 * 109.47403 * 190.00067 * 17 15 12 19 19 O 1.21287 * 120.00265 * 359.97438 * 18 17 15 20 20 N 1.34783 * 119.99835 * 180.02562 * 18 17 15 21 21 C 1.37100 * 119.99615 * 180.02562 * 20 18 17 22 22 H 1.07991 * 120.00235 * 359.97438 * 21 20 18 23 23 C 1.38958 * 119.99616 * 179.97438 * 21 20 18 24 24 N 1.31412 * 119.99582 * 179.97438 * 23 21 20 25 25 Si 1.86794 * 120.00067 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47399 * 89.99771 * 25 23 21 27 27 H 1.48494 * 109.47230 * 209.99808 * 25 23 21 28 28 H 1.48507 * 109.47142 * 329.99626 * 25 23 21 29 29 H 1.09003 * 109.47031 * 59.99423 * 1 2 3 30 30 H 1.08988 * 109.47438 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46837 * 300.00139 * 1 2 3 32 32 H 1.09001 * 109.46976 * 240.00387 * 2 1 3 33 33 H 1.08996 * 109.47339 * 120.00363 * 2 1 3 34 34 H 1.08002 * 126.42168 * 359.97438 * 4 3 2 35 35 H 1.08002 * 125.82262 * 179.97438 * 5 4 3 36 36 H 0.97007 * 120.00015 * 359.97438 * 10 8 7 37 37 H 1.08997 * 109.47422 * 299.99530 * 11 10 8 38 38 H 1.08998 * 109.47368 * 59.99722 * 11 10 8 39 39 H 1.08996 * 109.47250 * 59.99920 * 14 12 11 40 40 H 1.09008 * 109.46731 * 180.02562 * 14 12 11 41 41 H 1.08997 * 109.47259 * 299.99613 * 14 12 11 42 42 H 1.08999 * 109.47290 * 59.99439 * 16 15 12 43 43 H 1.08997 * 109.47423 * 180.02562 * 16 15 12 44 44 H 1.09002 * 109.46800 * 300.00186 * 16 15 12 45 45 H 1.09003 * 109.46937 * 310.00487 * 17 15 12 46 46 H 1.09004 * 109.46904 * 70.00042 * 17 15 12 47 47 H 0.96997 * 119.99899 * 359.97438 * 20 18 17 48 48 H 0.97006 * 119.99495 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3756 2.1079 -1.0852 5 6 2.7651 3.3275 -0.6393 6 7 2.6543 3.3437 0.6870 7 6 2.1987 2.1784 1.0954 8 6 1.9344 1.7965 2.4944 9 8 1.5174 0.6838 2.7525 10 7 2.1548 2.6807 3.4873 11 6 1.8926 2.3011 4.8777 12 6 2.2233 3.4773 5.7987 13 1 1.5427 4.3031 5.5920 14 6 2.0691 3.0420 7.2573 15 7 3.6064 3.9115 5.5609 16 6 4.5557 2.8293 5.8537 17 6 3.9222 5.1146 6.3423 18 6 5.2492 5.6707 5.8943 19 8 5.8710 5.1188 5.0112 20 7 5.7455 6.7808 6.4756 21 6 6.9526 7.2870 6.0675 22 1 7.5058 6.7960 5.2807 23 6 7.4641 8.4318 6.6665 24 7 8.6213 8.9166 6.2757 25 14 6.5075 9.2805 8.0281 26 1 6.9081 8.7148 9.3413 27 1 6.8008 10.7360 8.0059 28 1 5.0530 9.0654 7.8194 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0275 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.3542 1.7778 -2.1133 35 1 3.1112 4.1446 -1.2548 36 1 2.4877 3.5683 3.2814 37 1 0.8414 2.0358 4.9900 38 1 2.5136 1.4458 5.1441 39 1 2.7498 2.2162 7.4640 40 1 2.3043 3.8801 7.9134 41 1 1.0429 2.7198 7.4338 42 1 4.3423 1.9750 5.2113 43 1 5.5720 3.1778 5.6698 44 1 4.4572 2.5323 6.8979 45 1 3.1442 5.8624 6.1885 46 1 3.9747 4.8573 7.4003 47 1 5.2485 7.2219 7.1821 48 1 8.9785 9.7156 6.6941 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674920828.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:57 Heat of formation + Delta-G solvation = -18.000280 kcal Electronic energy + Delta-G solvation = -29538.720214 eV Core-core repulsion = 25436.467202 eV Total energy + Delta-G solvation = -4102.253012 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.26180 -40.87532 -40.22489 -38.76864 -36.26325 -35.94477 -35.13208 -33.71434 -32.28461 -31.31451 -30.57817 -29.47175 -27.47623 -26.98801 -25.37282 -24.89488 -23.64515 -22.29031 -21.41504 -21.10605 -20.61526 -20.04398 -18.77223 -17.95228 -17.40401 -17.22892 -16.89411 -16.71303 -16.64905 -16.27863 -15.64967 -15.58209 -15.47519 -15.12737 -14.88315 -14.74754 -14.65442 -14.47385 -14.30591 -14.15559 -13.86307 -13.60738 -13.52250 -13.12703 -12.98893 -12.89738 -12.80777 -12.41253 -12.39467 -12.31684 -12.23763 -11.95786 -11.75351 -11.42409 -11.36126 -11.10956 -10.82844 -10.33026 -10.19268 -10.16405 -9.48926 -9.14511 -8.38053 -5.98186 0.35130 1.31710 1.37339 1.46140 1.46535 1.63327 2.02148 2.25505 2.30693 2.41521 2.64665 3.18569 3.26843 3.40692 3.72545 3.74908 3.87319 4.04125 4.06331 4.20826 4.31081 4.35201 4.35390 4.41290 4.45871 4.48009 4.56080 4.63373 4.66056 4.71567 4.76170 4.79838 4.88615 5.03977 5.13958 5.20887 5.24894 5.31850 5.40651 5.56724 5.67411 5.92544 5.96017 6.03974 6.20756 6.38329 6.64030 6.86118 6.93436 7.10288 7.44938 8.03847 8.79914 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015437 B = 0.002573 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.343387 B =10877.782570 C =12190.779209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.091 3.909 3 N -0.414 5.414 4 C -0.006 4.006 5 C -0.055 4.055 6 N -0.473 5.473 7 C 0.104 3.896 8 C 0.601 3.399 9 O -0.567 6.567 10 N -0.689 5.689 11 C 0.133 3.867 12 C 0.070 3.930 13 H 0.106 0.894 14 C -0.181 4.181 15 N -0.530 5.530 16 C 0.027 3.973 17 C 0.055 3.945 18 C 0.452 3.548 19 O -0.604 6.604 20 N -0.594 5.594 21 C -0.323 4.323 22 H 0.053 0.947 23 C -0.019 4.019 24 N -0.938 5.938 25 Si 0.965 3.035 26 H -0.258 1.258 27 H -0.277 1.277 28 H -0.229 1.229 29 H 0.068 0.932 30 H 0.097 0.903 31 H 0.038 0.962 32 H 0.127 0.873 33 H 0.090 0.910 34 H 0.229 0.771 35 H 0.194 0.806 36 H 0.417 0.583 37 H 0.090 0.910 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.085 0.915 42 H 0.062 0.938 43 H 0.049 0.951 44 H 0.043 0.957 45 H 0.121 0.879 46 H 0.083 0.917 47 H 0.389 0.611 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.716 -16.052 -6.203 28.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.029 4.029 3 N -0.095 5.095 4 C -0.145 4.145 5 C -0.209 4.209 6 N -0.195 5.195 7 C -0.154 4.154 8 C 0.386 3.614 9 O -0.447 6.447 10 N -0.338 5.338 11 C 0.009 3.991 12 C -0.038 4.038 13 H 0.124 0.876 14 C -0.240 4.240 15 N -0.254 5.254 16 C -0.121 4.121 17 C -0.076 4.076 18 C 0.239 3.761 19 O -0.488 6.488 20 N -0.237 5.237 21 C -0.453 4.453 22 H 0.071 0.929 23 C -0.217 4.217 24 N -0.579 5.579 25 Si 0.785 3.215 26 H -0.182 1.182 27 H -0.202 1.202 28 H -0.152 1.152 29 H 0.087 0.913 30 H 0.116 0.884 31 H 0.058 0.942 32 H 0.145 0.855 33 H 0.108 0.892 34 H 0.245 0.755 35 H 0.211 0.789 36 H 0.255 0.745 37 H 0.108 0.892 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.104 0.896 42 H 0.081 0.919 43 H 0.068 0.932 44 H 0.062 0.938 45 H 0.139 0.861 46 H 0.101 0.899 47 H 0.224 0.776 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -22.280 -16.495 -6.468 28.466 hybrid contribution 0.509 0.492 0.656 0.965 sum -21.770 -16.004 -5.812 27.638 Atomic orbital electron populations 1.22005 0.92898 1.04299 1.01999 1.22316 0.96816 0.77675 1.06105 1.45539 1.44625 1.13518 1.05797 1.23615 1.03820 0.92767 0.94318 1.22976 1.08084 0.99442 0.90354 1.70200 1.15103 1.19730 1.14494 1.22597 1.12545 0.89441 0.90850 1.16599 0.77808 0.84362 0.82666 1.90736 1.48683 1.21136 1.84154 1.45623 1.64673 1.17436 1.06115 1.21582 1.01661 0.97114 0.78711 1.22115 0.89307 0.97627 0.94762 0.87578 1.22367 1.03948 1.02555 0.95091 1.61676 1.02623 1.04488 1.56648 1.22380 0.96866 0.93748 0.99132 1.21832 0.94340 0.94233 0.97156 1.20959 0.89120 0.81774 0.84209 1.90540 1.62971 1.61174 1.34066 1.42039 1.19511 1.26029 1.36103 1.18972 0.96630 1.09904 1.19758 0.92893 1.26129 0.97238 0.97043 1.01244 1.69819 1.20145 1.23775 1.44139 0.85356 0.80064 0.78062 0.77975 1.18231 1.20223 1.15245 0.91255 0.88410 0.94233 0.85457 0.89190 0.75504 0.78891 0.74548 0.89210 0.91849 0.92225 0.91008 0.89587 0.91914 0.93204 0.93834 0.86084 0.89949 0.77571 0.91281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 10.23 71.98 0.74 -1.30 16 2 C 0.09 1.37 6.18 86.38 0.53 1.91 16 3 N -0.41 -8.77 2.76 -516.44 -1.42 -10.19 16 4 C -0.01 -0.10 11.53 83.53 0.96 0.86 16 5 C -0.06 -1.28 11.85 83.88 0.99 -0.29 16 6 N -0.47 -14.57 10.89 -189.52 -2.06 -16.64 16 7 C 0.10 2.96 7.79 136.28 1.06 4.03 16 8 C 0.60 17.59 7.81 86.66 0.68 18.27 16 9 O -0.57 -17.22 14.51 -4.03 -0.06 -17.28 16 10 N -0.69 -18.65 5.38 -466.42 -2.51 -21.16 16 11 C 0.13 2.86 4.69 86.38 0.40 3.26 16 12 C 0.07 1.38 2.50 44.92 0.11 1.49 16 13 H 0.11 1.82 8.03 -2.39 -0.02 1.80 16 14 C -0.18 -2.68 8.50 71.98 0.61 -2.07 16 15 N -0.53 -15.20 3.93 -901.62 -3.54 -18.74 16 16 C 0.03 0.83 8.46 127.69 1.08 1.91 16 17 C 0.06 1.64 4.89 85.55 0.42 2.05 16 18 C 0.45 20.32 7.47 87.65 0.66 20.97 16 19 O -0.60 -33.62 13.91 -3.05 -0.04 -33.66 16 20 N -0.59 -28.07 5.09 -306.99 -1.56 -29.64 16 21 C -0.32 -19.13 10.16 84.04 0.85 -18.27 16 22 H 0.05 3.75 7.39 -2.91 -0.02 3.73 16 23 C -0.02 -1.04 5.50 84.93 0.47 -0.57 16 24 N -0.94 -57.35 13.96 21.67 0.30 -57.05 16 25 Si 0.97 39.05 27.74 68.60 1.90 40.96 16 26 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 27 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 28 H -0.23 -7.73 6.52 99.48 0.65 -7.08 16 29 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.04 0.76 7.86 -2.39 -0.02 0.74 16 32 H 0.13 0.97 8.13 -2.39 -0.02 0.95 16 33 H 0.09 1.74 6.64 -2.39 -0.02 1.72 16 34 H 0.23 1.47 8.06 -2.91 -0.02 1.44 16 35 H 0.19 3.49 8.06 -2.91 -0.02 3.46 16 36 H 0.42 12.57 7.82 -92.70 -0.72 11.85 16 37 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.06 1.48 6.70 -2.39 -0.02 1.46 16 39 H 0.06 0.96 6.39 -2.39 -0.02 0.95 16 40 H 0.07 1.01 6.75 -2.38 -0.02 0.99 16 41 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.06 1.89 6.44 -2.39 -0.02 1.87 16 43 H 0.05 2.03 5.82 -2.39 -0.01 2.01 16 44 H 0.04 1.12 6.28 -2.39 -0.01 1.11 16 45 H 0.12 2.89 8.00 -2.39 -0.02 2.87 16 46 H 0.08 1.99 6.94 -2.38 -0.02 1.98 16 47 H 0.39 15.10 5.76 -92.71 -0.53 14.57 16 48 H 0.28 15.53 8.31 -92.70 -0.77 14.76 16 Total: -1.00 -85.70 388.39 0.25 -85.44 By element: Atomic # 1 Polarization: 46.01 SS G_CDS: -0.31 Total: 45.70 kcal Atomic # 6 Polarization: 22.68 SS G_CDS: 9.57 Total: 32.25 kcal Atomic # 7 Polarization: -142.61 SS G_CDS: -10.80 Total: -153.42 kcal Atomic # 8 Polarization: -50.84 SS G_CDS: -0.10 Total: -50.94 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 1.90 Total: 40.96 kcal Total: -85.70 0.25 -85.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674920828.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.444 kcal (2) G-P(sol) polarization free energy of solvation -85.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds