Wall clock time and date at job start Tue Mar 31 2020 20:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47125 * 2 1 4 4 N 1.28521 * 124.44112 * 269.97188 * 3 2 1 5 5 C 1.31134 * 109.05706 * 179.73693 * 4 3 2 6 6 C 1.50699 * 127.11447 * 180.29293 * 5 4 3 7 7 C 1.40934 * 105.77287 * 0.43359 * 5 4 3 8 8 C 1.47798 * 127.23429 * 179.83661 * 7 5 4 9 9 O 1.21566 * 119.99979 * 353.81623 * 8 7 5 10 10 N 1.34771 * 120.00075 * 173.81528 * 8 7 5 11 11 C 1.47150 * 120.98149 * 353.52308 * 10 8 7 12 12 C 1.53300 * 108.38649 * 230.54809 * 11 10 8 13 13 O 1.42955 * 109.22312 * 307.70159 * 12 11 10 14 14 C 1.42958 * 114.16947 * 62.57845 * 13 12 11 15 15 H 1.08993 * 109.51584 * 57.39422 * 14 13 12 16 16 C 1.53004 * 109.51478 * 177.50075 * 14 13 12 17 17 H 1.08997 * 109.47691 * 174.90093 * 16 14 13 18 18 C 1.53002 * 109.47391 * 54.89002 * 16 14 13 19 19 N 1.46504 * 109.46455 * 294.89756 * 16 14 13 20 20 C 1.36945 * 119.99687 * 204.99998 * 19 16 14 21 21 H 1.08000 * 119.99872 * 0.02562 * 20 19 16 22 22 C 1.38811 * 119.99802 * 179.97438 * 20 19 16 23 23 N 1.31621 * 120.00206 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99872 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47176 * 59.99711 * 24 22 20 26 26 H 1.48499 * 109.47074 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47288 * 300.00025 * 24 22 20 28 28 C 1.47168 * 120.94224 * 173.57366 * 10 8 7 29 29 N 1.28587 * 124.44405 * 90.00350 * 3 2 1 30 30 H 1.09003 * 109.47181 * 300.00307 * 1 2 3 31 31 H 1.09002 * 109.47415 * 59.99807 * 1 2 3 32 32 H 1.09005 * 109.47533 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46765 * 240.00028 * 2 1 3 34 34 H 1.08994 * 109.47133 * 120.00105 * 2 1 3 35 35 H 1.08999 * 109.47240 * 270.17304 * 6 5 4 36 36 H 1.09007 * 109.46680 * 30.17370 * 6 5 4 37 37 H 1.09005 * 109.46936 * 150.16731 * 6 5 4 38 38 H 1.08994 * 109.68482 * 110.82493 * 11 10 8 39 39 H 1.09006 * 109.71394 * 350.28797 * 11 10 8 40 40 H 1.08995 * 109.51346 * 187.77178 * 12 11 10 41 41 H 1.09003 * 109.50714 * 67.62499 * 12 11 10 42 42 H 1.08996 * 109.47077 * 300.01099 * 18 16 14 43 43 H 1.09005 * 109.46401 * 60.00863 * 18 16 14 44 44 H 1.08997 * 109.46597 * 179.97438 * 18 16 14 45 45 H 0.96996 * 120.00750 * 25.00004 * 19 16 14 46 46 H 0.96999 * 119.99925 * 179.97438 * 23 22 20 47 47 H 1.08994 * 109.73150 * 9.75254 * 28 10 8 48 48 H 1.09005 * 109.64491 * 249.19303 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2611 2.0663 -1.0599 5 6 2.6770 3.2603 -0.7120 6 6 3.0681 4.3901 -1.6295 7 6 2.6858 3.2674 0.6972 8 6 3.0802 4.3825 1.5835 9 8 3.5537 5.3971 1.1099 10 7 2.9151 4.2745 2.9167 11 6 2.2167 3.1192 3.5023 12 6 1.1428 3.6401 4.4642 13 8 1.7403 4.5549 5.3861 14 6 2.2945 5.7228 4.7756 15 1 1.5195 6.2413 4.2114 16 6 2.8469 6.6522 5.8583 17 1 3.3493 7.4982 5.3893 18 6 3.8444 5.8851 6.7286 19 7 1.7452 7.1394 6.6920 20 6 1.8690 8.3254 7.3655 21 1 2.7786 8.9016 7.2816 22 6 0.8250 8.7874 8.1550 23 7 -0.2841 8.0859 8.2561 24 14 0.9935 10.4055 9.0731 25 1 1.2219 11.5047 8.1010 26 1 -0.2504 10.6718 9.8392 27 1 2.1434 10.3259 10.0094 28 6 3.4273 5.3095 3.8289 29 7 2.2608 2.0669 1.0604 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 4.1324 4.3231 -1.8550 36 1 2.4956 4.3216 -2.5546 37 1 2.8591 5.3426 -1.1424 38 1 2.9275 2.4981 4.0473 39 1 1.7482 2.5332 2.7115 40 1 0.7076 2.8040 5.0114 41 1 0.3637 4.1506 3.8980 42 1 3.3420 5.0391 7.1976 43 1 4.6641 5.5225 6.1082 44 1 4.2382 6.5474 7.4995 45 1 0.9282 6.6222 6.7671 46 1 -1.0135 8.4086 8.8081 47 1 3.7597 6.1743 3.2547 48 1 4.2607 4.9093 4.4064 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675628773.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:56 Heat of formation + Delta-G solvation = 32.869271 kcal Electronic energy + Delta-G solvation = -30154.324035 eV Core-core repulsion = 26054.276892 eV Total energy + Delta-G solvation = -4100.047143 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.82388 -41.41268 -39.61664 -37.14604 -36.11127 -35.91343 -34.40280 -33.99965 -32.48529 -31.76828 -30.00196 -29.35187 -28.45633 -26.64716 -25.85784 -24.91515 -23.91383 -23.12986 -22.19334 -21.24259 -20.73068 -19.29132 -18.46980 -18.30893 -17.75113 -17.59112 -17.06949 -16.62667 -16.45423 -16.10412 -15.81612 -15.61730 -15.31238 -15.13648 -14.90529 -14.52514 -14.48718 -14.17167 -14.01021 -13.88594 -13.65764 -13.50342 -13.23957 -13.04895 -13.01516 -12.79057 -12.61666 -12.44110 -12.41712 -12.31954 -12.21119 -12.04973 -11.74698 -11.62986 -11.56750 -11.39293 -11.25937 -10.97507 -10.90715 -10.32939 -9.63998 -8.99133 -7.90290 -5.19047 0.08393 0.76946 1.10002 1.48385 1.51838 1.57522 1.68994 1.99777 2.58361 2.66715 2.80184 3.38131 3.43537 3.58091 3.68006 3.90861 3.92421 3.94808 3.96178 4.02530 4.13291 4.21206 4.32438 4.37168 4.41819 4.44059 4.55674 4.62982 4.65176 4.71670 4.72835 4.76844 4.78369 4.86189 4.94515 4.96656 5.11246 5.16584 5.22269 5.26566 5.28557 5.53410 5.61876 5.64884 6.10673 6.23227 6.31162 6.79208 7.03684 7.37245 8.12996 8.37775 9.33182 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019742 B = 0.002528 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.934266 B =11074.119624 C =11635.472651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.118 3.882 3 N -0.129 5.129 4 N -0.295 5.295 5 C 0.051 3.949 6 C -0.066 4.066 7 C -0.068 4.068 8 C 0.605 3.395 9 O -0.551 6.551 10 N -0.600 5.600 11 C 0.066 3.934 12 C 0.043 3.957 13 O -0.380 6.380 14 C 0.089 3.911 15 H 0.039 0.961 16 C 0.177 3.823 17 H 0.062 0.938 18 C -0.149 4.149 19 N -0.733 5.733 20 C -0.239 4.239 21 H 0.078 0.922 22 C -0.078 4.078 23 N -0.970 5.970 24 Si 0.973 3.027 25 H -0.278 1.278 26 H -0.297 1.297 27 H -0.277 1.277 28 C 0.094 3.906 29 N -0.244 5.244 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.117 0.883 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.133 0.867 40 H 0.129 0.871 41 H 0.040 0.960 42 H 0.045 0.955 43 H 0.071 0.929 44 H 0.038 0.962 45 H 0.375 0.625 46 H 0.250 0.750 47 H 0.098 0.902 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.372 -21.225 -20.413 29.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.001 3.999 3 N -0.033 5.033 4 N -0.137 5.137 5 C -0.111 4.111 6 C -0.124 4.124 7 C -0.228 4.228 8 C 0.392 3.608 9 O -0.428 6.428 10 N -0.333 5.333 11 C -0.057 4.057 12 C -0.034 4.034 13 O -0.299 6.299 14 C 0.030 3.970 15 H 0.057 0.943 16 C 0.068 3.932 17 H 0.080 0.920 18 C -0.208 4.208 19 N -0.373 5.373 20 C -0.370 4.370 21 H 0.096 0.904 22 C -0.270 4.270 23 N -0.621 5.621 24 Si 0.802 3.198 25 H -0.204 1.204 26 H -0.223 1.223 27 H -0.204 1.204 28 C -0.029 4.029 29 N -0.094 5.094 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.136 0.864 33 H 0.151 0.849 34 H 0.152 0.848 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.099 0.901 38 H 0.108 0.892 39 H 0.151 0.849 40 H 0.146 0.854 41 H 0.059 0.941 42 H 0.064 0.936 43 H 0.090 0.910 44 H 0.057 0.943 45 H 0.207 0.793 46 H 0.058 0.942 47 H 0.116 0.884 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.266 -21.844 -20.413 30.357 hybrid contribution -0.377 1.639 0.626 1.795 sum 4.888 -20.205 -19.787 28.700 Atomic orbital electron populations 1.22190 0.92052 1.05654 1.02630 1.22699 0.96844 0.71954 1.08389 1.48887 1.41537 1.14305 0.98594 1.73958 1.18996 1.04968 1.15760 1.23581 1.00509 0.94535 0.92492 1.20252 1.02914 0.92263 0.96999 1.22690 1.11686 0.93868 0.94567 1.16940 0.77967 0.84701 0.81179 1.90766 1.46816 1.30170 1.75015 1.48025 1.56400 1.23940 1.04926 1.23117 0.95868 0.87550 0.99128 1.23161 0.94212 0.93874 0.92182 1.88046 1.76099 1.31820 1.33903 1.22599 0.94281 0.86484 0.93664 0.94263 1.20432 0.89278 0.93387 0.90076 0.92019 1.22218 0.98634 0.99923 1.00041 1.42536 1.16101 1.23518 1.55168 1.19628 0.99728 0.97594 1.20098 0.90414 1.25565 0.96344 1.02478 1.02626 1.69840 1.06264 1.40907 1.45118 0.85217 0.76385 0.79796 0.78397 1.20419 1.22345 1.20357 1.22374 0.96691 0.92505 0.91306 1.74149 1.15301 1.04210 1.15707 0.92433 0.92580 0.86431 0.84943 0.84794 0.89061 0.88879 0.90139 0.89185 0.84946 0.85356 0.94111 0.93594 0.91002 0.94317 0.79346 0.94174 0.88406 0.88344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.96 10.24 71.98 0.74 -0.23 16 2 C 0.12 0.79 7.24 86.38 0.63 1.41 16 3 N -0.13 -2.20 3.94 -187.50 -0.74 -2.94 16 4 N -0.29 -6.05 12.01 -46.58 -0.56 -6.61 16 5 C 0.05 1.18 7.39 43.32 0.32 1.50 16 6 C -0.07 -1.24 9.95 71.24 0.71 -0.53 16 7 C -0.07 -1.72 6.88 42.24 0.29 -1.43 16 8 C 0.61 17.71 7.71 86.77 0.67 18.37 16 9 O -0.55 -18.51 14.76 -3.92 -0.06 -18.56 16 10 N -0.60 -16.55 3.02 -820.75 -2.48 -19.03 16 11 C 0.07 1.50 6.29 86.36 0.54 2.04 16 12 C 0.04 1.12 6.98 72.08 0.50 1.63 16 13 O -0.38 -13.26 9.24 -148.98 -1.38 -14.64 16 14 C 0.09 3.17 2.61 30.70 0.08 3.25 16 15 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 16 C 0.18 7.21 2.77 44.99 0.12 7.34 16 17 H 0.06 2.48 8.08 -2.39 -0.02 2.46 16 18 C -0.15 -5.40 9.06 71.98 0.65 -4.75 16 19 N -0.73 -38.43 5.10 -322.92 -1.65 -40.07 16 20 C -0.24 -13.55 9.93 84.03 0.83 -12.71 16 21 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 22 C -0.08 -4.59 5.50 84.86 0.47 -4.13 16 23 N -0.97 -61.05 13.06 21.65 0.28 -60.77 16 24 Si 0.97 47.13 29.55 68.60 2.03 49.15 16 25 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 26 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 27 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 28 C 0.09 2.76 5.84 86.35 0.50 3.26 16 29 N -0.24 -5.07 8.68 -48.17 -0.42 -5.49 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.12 0.02 8.14 -2.38 -0.02 0.00 16 33 H 0.13 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.13 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 37 H 0.08 1.76 6.91 -2.38 -0.02 1.75 16 38 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.13 2.73 4.37 -5.25 -0.02 2.71 16 40 H 0.13 2.66 8.14 -2.39 -0.02 2.64 16 41 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.04 1.77 7.56 -2.39 -0.02 1.75 16 43 H 0.07 2.06 6.42 -2.38 -0.02 2.05 16 44 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.37 21.49 7.58 -92.71 -0.70 20.79 16 46 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 47 H 0.10 2.99 7.06 -2.39 -0.02 2.97 16 48 H 0.10 2.60 6.27 -2.38 -0.01 2.58 16 Total: -1.00 -75.77 387.16 2.36 -73.41 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: 0.27 Total: 30.50 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: 7.06 Total: 15.04 kcal Atomic # 7 Polarization: -129.34 SS G_CDS: -5.56 Total: -134.91 kcal Atomic # 8 Polarization: -31.77 SS G_CDS: -1.43 Total: -33.21 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.15 kcal Total: -75.77 2.36 -73.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675628773.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.283 kcal (2) G-P(sol) polarization free energy of solvation -75.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds