Wall clock time and date at job start Tue Mar 31 2020 20:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.47032 * 2 1 4 4 N 1.28520 * 124.44444 * 89.97635 * 3 2 1 5 5 C 1.31126 * 109.06304 * 180.02562 * 4 3 2 6 6 C 1.50700 * 127.11444 * 179.97438 * 5 4 3 7 7 C 1.40927 * 105.77517 * 0.02562 * 5 4 3 8 8 C 1.47800 * 127.23537 * 179.97438 * 7 5 4 9 9 O 1.21559 * 120.00574 * 5.82013 * 8 7 5 10 10 N 1.34781 * 119.99465 * 185.82103 * 8 7 5 11 11 C 1.47149 * 120.98672 * 355.56090 * 10 8 7 12 12 C 1.53289 * 108.38497 * 129.44508 * 11 10 8 13 13 O 1.42961 * 109.22501 * 52.30089 * 12 11 10 14 14 C 1.42960 * 114.16989 * 297.42142 * 13 12 11 15 15 H 1.09001 * 109.51010 * 302.60806 * 14 13 12 16 16 C 1.52999 * 109.51317 * 182.50317 * 14 13 12 17 17 H 1.08997 * 109.46881 * 179.97438 * 16 14 13 18 18 C 1.53004 * 109.47186 * 60.00076 * 16 14 13 19 19 N 1.46493 * 109.47200 * 299.99864 * 16 14 13 20 20 C 1.36941 * 120.00206 * 205.00418 * 19 16 14 21 21 H 1.08000 * 119.99495 * 359.97438 * 20 19 16 22 22 C 1.38810 * 119.99964 * 180.02562 * 20 19 16 23 23 N 1.31620 * 119.99767 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 120.00278 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.46842 * 90.00740 * 24 22 20 26 26 H 1.48500 * 109.47019 * 210.00483 * 24 22 20 27 27 H 1.48498 * 109.46969 * 330.00424 * 24 22 20 28 28 C 1.47155 * 120.97664 * 175.54065 * 10 8 7 29 29 N 1.28590 * 124.44702 * 270.28928 * 3 2 1 30 30 H 1.08999 * 109.47056 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47771 * 299.99734 * 1 2 3 32 32 H 1.08998 * 109.47362 * 60.00125 * 1 2 3 33 33 H 1.09002 * 109.47061 * 240.00105 * 2 1 3 34 34 H 1.08998 * 109.47362 * 119.99875 * 2 1 3 35 35 H 1.08998 * 109.47559 * 270.02210 * 6 5 4 36 36 H 1.09000 * 109.47109 * 30.03150 * 6 5 4 37 37 H 1.09005 * 109.47161 * 150.02534 * 6 5 4 38 38 H 1.08997 * 109.67949 * 9.72047 * 11 10 8 39 39 H 1.09002 * 109.67804 * 249.16960 * 11 10 8 40 40 H 1.09000 * 109.51093 * 292.37660 * 12 11 10 41 41 H 1.09006 * 109.55168 * 172.25236 * 12 11 10 42 42 H 1.08997 * 109.46867 * 300.00232 * 18 16 14 43 43 H 1.08998 * 109.46809 * 179.97438 * 18 16 14 44 44 H 1.09001 * 109.47196 * 59.99489 * 18 16 14 45 45 H 0.97002 * 120.00335 * 25.00159 * 19 16 14 46 46 H 0.96997 * 119.99877 * 179.97438 * 23 22 20 47 47 H 1.08997 * 109.68338 * 110.83400 * 28 10 8 48 48 H 1.09000 * 109.68527 * 350.27715 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2601 2.0667 1.0599 5 6 2.6812 3.2588 0.7121 6 6 3.0786 4.3864 1.6296 7 6 2.6840 3.2681 -0.6972 8 6 3.0773 4.3836 -1.5834 9 8 3.5488 5.3991 -1.1098 10 7 2.9131 4.2750 -2.9167 11 6 2.4355 3.0215 -3.5216 12 6 1.2665 3.3506 -4.4569 13 8 1.6649 4.3815 -5.3636 14 6 1.9990 5.6197 -4.7319 15 1 1.1496 5.9700 -4.1454 16 6 2.3476 6.6599 -5.7984 17 1 2.6017 7.6037 -5.3160 18 6 1.1448 6.8670 -6.7211 19 7 3.4907 6.1893 -6.5844 20 6 4.3012 7.0906 -7.2215 21 1 4.0973 8.1484 -7.1449 22 6 5.3841 6.6446 -7.9667 23 7 6.1628 7.5109 -8.5795 24 14 5.7362 4.8149 -8.0998 25 1 5.0166 4.2564 -9.2726 26 1 7.1963 4.6028 -8.2680 27 1 5.2757 4.1311 -6.8647 28 6 3.2056 5.4068 -3.8106 29 7 2.2557 2.0688 -1.0604 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.2053 5.0001 1.8505 36 1 3.4787 3.9764 2.5569 37 1 3.8394 4.9983 1.1448 38 1 2.0994 2.3411 -2.7392 39 1 3.2416 2.5580 -4.0904 40 1 0.4147 3.6922 -3.8688 41 1 0.9869 2.4594 -5.0189 42 1 0.8902 5.9233 -7.2034 43 1 1.3930 7.6084 -7.4806 44 1 0.2942 7.2171 -6.1363 45 1 3.6736 5.2392 -6.6535 46 1 6.9197 7.1993 -9.0999 47 1 4.0891 5.1835 -4.4086 48 1 3.3794 6.3060 -3.2196 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675628774.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:59 Heat of formation + Delta-G solvation = 62.498774 kcal Electronic energy + Delta-G solvation = -30596.732333 eV Core-core repulsion = 26497.970022 eV Total energy + Delta-G solvation = -4098.762311 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.99968 -40.21247 -38.40206 -35.68290 -35.50286 -34.71845 -33.23408 -32.28495 -31.75224 -30.37169 -28.88429 -28.58798 -27.69729 -25.40848 -24.11437 -23.33083 -23.02787 -21.96999 -21.43425 -19.86709 -19.61670 -17.87370 -17.64690 -17.21490 -16.91512 -16.34919 -15.81843 -15.41581 -15.05862 -15.02037 -14.65890 -14.34691 -14.15983 -14.02932 -13.77990 -13.51903 -13.25568 -13.07742 -12.91918 -12.83126 -12.66446 -12.44156 -12.30089 -12.02593 -12.00918 -11.74499 -11.64914 -11.26289 -10.96741 -10.83260 -10.75712 -10.60413 -10.53679 -10.30494 -10.06348 -9.92709 -9.80087 -9.52030 -9.49876 -8.91344 -8.45103 -7.20549 -5.71815 -3.06486 1.01674 1.64920 1.73627 2.79815 3.09898 3.43023 3.47927 3.50248 3.52782 3.93164 4.19666 4.23897 4.42001 4.50872 4.56193 4.65073 4.82262 4.92110 5.05379 5.06952 5.15866 5.18446 5.24061 5.28692 5.36517 5.43463 5.46431 5.56021 5.59204 5.64798 5.67230 5.69174 5.80891 5.88394 6.09049 6.15771 6.23957 6.33490 6.35989 6.49645 6.55277 6.74519 7.08004 7.26615 7.38034 7.81016 8.03854 8.05348 8.47648 9.27227 9.99444 10.20666 11.46578 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015713 B = 0.003105 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.483690 B = 9015.693211 C = 9266.521605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.132 3.868 3 N -0.143 5.143 4 N -0.289 5.289 5 C 0.062 3.938 6 C -0.071 4.071 7 C -0.037 4.037 8 C 0.605 3.395 9 O -0.524 6.524 10 N -0.597 5.597 11 C 0.042 3.958 12 C 0.051 3.949 13 O -0.365 6.365 14 C 0.075 3.925 15 H 0.060 0.940 16 C 0.189 3.811 17 H 0.070 0.930 18 C -0.161 4.161 19 N -0.743 5.743 20 C -0.241 4.241 21 H 0.091 0.909 22 C 0.005 3.995 23 N -0.935 5.935 24 Si 0.883 3.117 25 H -0.285 1.285 26 H -0.293 1.293 27 H -0.277 1.277 28 C 0.086 3.914 29 N -0.252 5.252 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.135 0.865 39 H 0.075 0.925 40 H 0.048 0.952 41 H 0.101 0.899 42 H 0.054 0.946 43 H 0.058 0.942 44 H 0.036 0.964 45 H 0.367 0.633 46 H 0.259 0.741 47 H 0.094 0.906 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.670 -16.458 20.267 29.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.013 3.987 3 N -0.045 5.045 4 N -0.131 5.131 5 C -0.101 4.101 6 C -0.129 4.129 7 C -0.199 4.199 8 C 0.390 3.610 9 O -0.398 6.398 10 N -0.330 5.330 11 C -0.082 4.082 12 C -0.027 4.027 13 O -0.283 6.283 14 C 0.016 3.984 15 H 0.078 0.922 16 C 0.079 3.921 17 H 0.087 0.913 18 C -0.221 4.221 19 N -0.386 5.386 20 C -0.370 4.370 21 H 0.109 0.891 22 C -0.190 4.190 23 N -0.582 5.582 24 Si 0.713 3.287 25 H -0.211 1.211 26 H -0.220 1.220 27 H -0.203 1.203 28 C -0.036 4.036 29 N -0.099 5.099 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.117 0.883 38 H 0.152 0.848 39 H 0.094 0.906 40 H 0.067 0.933 41 H 0.119 0.881 42 H 0.073 0.927 43 H 0.078 0.922 44 H 0.055 0.945 45 H 0.201 0.799 46 H 0.069 0.931 47 H 0.112 0.888 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -13.728 -17.011 20.241 29.791 hybrid contribution 0.556 -0.763 -0.114 0.951 sum -13.171 -17.774 20.127 29.908 Atomic orbital electron populations 1.22197 0.92790 1.04148 1.03865 1.22125 0.96278 0.74111 1.06225 1.48321 1.43578 1.13265 0.99358 1.73940 1.18602 1.05256 1.15271 1.23265 1.00459 0.93866 0.92524 1.20270 1.03010 0.92787 0.96866 1.22989 1.08972 0.93539 0.94426 1.16726 0.78518 0.84681 0.81041 1.90789 1.44817 1.29568 1.74640 1.48018 1.64920 1.14773 1.05250 1.23309 0.98278 0.86944 0.99655 1.22884 0.95090 0.92365 0.92399 1.88052 1.86954 1.20810 1.32520 1.22980 0.95111 0.85664 0.94653 0.92202 1.20234 0.88504 0.93471 0.89931 0.91263 1.22315 0.97364 1.01895 1.00483 1.42741 1.30202 1.05605 1.60100 1.19078 1.04562 0.90600 1.22809 0.89138 1.24634 0.97794 0.96800 0.99797 1.69700 1.18924 1.32430 1.37191 0.86568 0.77072 0.87090 0.77935 1.21134 1.21978 1.20278 1.22518 0.99663 0.89534 0.91878 1.74018 1.16258 1.04747 1.14902 0.89325 0.91302 0.91238 0.87003 0.87039 0.90063 0.90605 0.88303 0.84805 0.90639 0.93328 0.88065 0.92664 0.92247 0.94521 0.79938 0.93140 0.88792 0.87934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.67 10.24 37.16 0.38 -0.29 16 2 C 0.13 0.65 7.24 -4.04 -0.03 0.62 16 3 N -0.14 -1.40 3.94 -10.62 -0.04 -1.44 16 4 N -0.29 -3.25 12.01 33.92 0.41 -2.84 16 5 C 0.06 0.76 7.39 -81.88 -0.61 0.15 16 6 C -0.07 -0.70 10.05 36.01 0.36 -0.34 16 7 C -0.04 -0.50 6.96 -82.68 -0.58 -1.07 16 8 C 0.61 9.42 7.72 -12.35 -0.10 9.32 16 9 O -0.52 -9.17 14.66 5.31 0.08 -9.09 16 10 N -0.60 -9.13 3.02 -173.41 -0.52 -9.65 16 11 C 0.04 0.54 6.51 -3.54 -0.02 0.52 16 12 C 0.05 0.63 6.98 37.31 0.26 0.89 16 13 O -0.37 -6.00 9.22 -35.23 -0.32 -6.32 16 14 C 0.08 1.24 2.53 -26.58 -0.07 1.18 16 15 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 16 C 0.19 3.63 2.73 -67.93 -0.19 3.44 16 17 H 0.07 1.34 8.08 -51.93 -0.42 0.92 16 18 C -0.16 -2.88 9.35 37.16 0.35 -2.53 16 19 N -0.74 -17.51 4.09 -53.43 -0.22 -17.73 16 20 C -0.24 -6.73 10.41 -15.06 -0.16 -6.89 16 21 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16 22 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 23 N -0.93 -29.55 13.97 55.49 0.78 -28.77 16 24 Si 0.88 22.61 27.74 -169.99 -4.71 17.89 16 25 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.29 -7.62 7.11 56.52 0.40 -7.21 16 27 H -0.28 -6.73 6.52 56.52 0.37 -6.36 16 28 C 0.09 1.47 5.85 -3.53 -0.02 1.45 16 29 N -0.25 -2.91 8.53 33.42 0.29 -2.62 16 30 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.10 1.11 6.68 -51.93 -0.35 0.76 16 38 H 0.14 1.54 3.88 -93.99 -0.37 1.18 16 39 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.05 1.02 7.68 -51.93 -0.40 0.62 16 43 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.37 8.79 5.06 -40.82 -0.21 8.58 16 46 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 47 H 0.09 1.85 7.26 -51.93 -0.38 1.47 16 48 H 0.10 1.78 7.11 -51.93 -0.37 1.41 16 LS Contribution 385.34 15.07 5.81 5.81 Total: -1.00 -34.89 385.34 -6.55 -41.43 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -7.57 Total: 6.84 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: -0.50 Total: 6.51 kcal Atomic # 7 Polarization: -63.75 SS G_CDS: 0.68 Total: -63.07 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -0.25 Total: -15.42 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.71 Total: 17.89 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.89 -6.55 -41.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675628774.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.933 kcal (2) G-P(sol) polarization free energy of solvation -34.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds