Wall clock time and date at job start Tue Mar 31 2020 20:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.47032 * 2 1 4 4 N 1.28520 * 124.44444 * 89.97635 * 3 2 1 5 5 C 1.31126 * 109.06304 * 180.02562 * 4 3 2 6 6 C 1.50700 * 127.11444 * 179.97438 * 5 4 3 7 7 C 1.40927 * 105.77517 * 0.02562 * 5 4 3 8 8 C 1.47800 * 127.23537 * 179.97438 * 7 5 4 9 9 O 1.21559 * 120.00574 * 5.82013 * 8 7 5 10 10 N 1.34781 * 119.99465 * 185.82103 * 8 7 5 11 11 C 1.47149 * 120.98672 * 355.56090 * 10 8 7 12 12 C 1.53289 * 108.38497 * 129.44508 * 11 10 8 13 13 O 1.42961 * 109.22501 * 52.30089 * 12 11 10 14 14 C 1.42960 * 114.16989 * 297.42142 * 13 12 11 15 15 H 1.09001 * 109.51010 * 302.60806 * 14 13 12 16 16 C 1.52999 * 109.51317 * 182.50317 * 14 13 12 17 17 H 1.08997 * 109.46881 * 179.97438 * 16 14 13 18 18 C 1.53004 * 109.47186 * 60.00076 * 16 14 13 19 19 N 1.46493 * 109.47200 * 299.99864 * 16 14 13 20 20 C 1.36941 * 120.00206 * 205.00418 * 19 16 14 21 21 H 1.08000 * 119.99495 * 359.97438 * 20 19 16 22 22 C 1.38810 * 119.99964 * 180.02562 * 20 19 16 23 23 N 1.31620 * 119.99767 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 120.00278 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.46842 * 90.00740 * 24 22 20 26 26 H 1.48500 * 109.47019 * 210.00483 * 24 22 20 27 27 H 1.48498 * 109.46969 * 330.00424 * 24 22 20 28 28 C 1.47155 * 120.97664 * 175.54065 * 10 8 7 29 29 N 1.28590 * 124.44702 * 270.28928 * 3 2 1 30 30 H 1.08999 * 109.47056 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47771 * 299.99734 * 1 2 3 32 32 H 1.08998 * 109.47362 * 60.00125 * 1 2 3 33 33 H 1.09002 * 109.47061 * 240.00105 * 2 1 3 34 34 H 1.08998 * 109.47362 * 119.99875 * 2 1 3 35 35 H 1.08998 * 109.47559 * 270.02210 * 6 5 4 36 36 H 1.09000 * 109.47109 * 30.03150 * 6 5 4 37 37 H 1.09005 * 109.47161 * 150.02534 * 6 5 4 38 38 H 1.08997 * 109.67949 * 9.72047 * 11 10 8 39 39 H 1.09002 * 109.67804 * 249.16960 * 11 10 8 40 40 H 1.09000 * 109.51093 * 292.37660 * 12 11 10 41 41 H 1.09006 * 109.55168 * 172.25236 * 12 11 10 42 42 H 1.08997 * 109.46867 * 300.00232 * 18 16 14 43 43 H 1.08998 * 109.46809 * 179.97438 * 18 16 14 44 44 H 1.09001 * 109.47196 * 59.99489 * 18 16 14 45 45 H 0.97002 * 120.00335 * 25.00159 * 19 16 14 46 46 H 0.96997 * 119.99877 * 179.97438 * 23 22 20 47 47 H 1.08997 * 109.68338 * 110.83400 * 28 10 8 48 48 H 1.09000 * 109.68527 * 350.27715 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2601 2.0667 1.0599 5 6 2.6812 3.2588 0.7121 6 6 3.0786 4.3864 1.6296 7 6 2.6840 3.2681 -0.6972 8 6 3.0773 4.3836 -1.5834 9 8 3.5488 5.3991 -1.1098 10 7 2.9131 4.2750 -2.9167 11 6 2.4355 3.0215 -3.5216 12 6 1.2665 3.3506 -4.4569 13 8 1.6649 4.3815 -5.3636 14 6 1.9990 5.6197 -4.7319 15 1 1.1496 5.9700 -4.1454 16 6 2.3476 6.6599 -5.7984 17 1 2.6017 7.6037 -5.3160 18 6 1.1448 6.8670 -6.7211 19 7 3.4907 6.1893 -6.5844 20 6 4.3012 7.0906 -7.2215 21 1 4.0973 8.1484 -7.1449 22 6 5.3841 6.6446 -7.9667 23 7 6.1628 7.5109 -8.5795 24 14 5.7362 4.8149 -8.0998 25 1 5.0166 4.2564 -9.2726 26 1 7.1963 4.6028 -8.2680 27 1 5.2757 4.1311 -6.8647 28 6 3.2056 5.4068 -3.8106 29 7 2.2557 2.0688 -1.0604 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.2053 5.0001 1.8505 36 1 3.4787 3.9764 2.5569 37 1 3.8394 4.9983 1.1448 38 1 2.0994 2.3411 -2.7392 39 1 3.2416 2.5580 -4.0904 40 1 0.4147 3.6922 -3.8688 41 1 0.9869 2.4594 -5.0189 42 1 0.8902 5.9233 -7.2034 43 1 1.3930 7.6084 -7.4806 44 1 0.2942 7.2171 -6.1363 45 1 3.6736 5.2392 -6.6535 46 1 6.9197 7.1993 -9.0999 47 1 4.0891 5.1835 -4.4086 48 1 3.3794 6.3060 -3.2196 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675628774.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:59 Heat of formation + Delta-G solvation = 37.356425 kcal Electronic energy + Delta-G solvation = -30597.822587 eV Core-core repulsion = 26497.970022 eV Total energy + Delta-G solvation = -4099.852565 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.85214 -41.42210 -39.66041 -37.27890 -36.12825 -35.98449 -34.29322 -34.05478 -32.52275 -31.89706 -30.51032 -29.54023 -28.65835 -26.40446 -25.50098 -24.91734 -23.91101 -23.08281 -22.24521 -21.39488 -20.75651 -19.82952 -18.51122 -18.31386 -17.81655 -17.62130 -17.03559 -16.67099 -16.39550 -16.06198 -15.97560 -15.57231 -15.28314 -15.03907 -14.94377 -14.68924 -14.47057 -14.31279 -14.15198 -13.95006 -13.70226 -13.48435 -13.34669 -13.22592 -13.03463 -12.85026 -12.64846 -12.56208 -12.51489 -12.32972 -12.14656 -11.98343 -11.77965 -11.69330 -11.48448 -11.46747 -11.23779 -11.01360 -10.94325 -10.33986 -9.69890 -9.25754 -7.99084 -5.30369 0.05748 0.75315 1.06468 1.38028 1.40085 1.47279 1.68430 1.98086 2.50234 2.63140 2.76209 3.33393 3.37846 3.56062 3.64712 3.75175 3.90249 3.91639 3.93001 3.97836 4.13552 4.17547 4.22134 4.34105 4.37548 4.46564 4.54969 4.61759 4.69607 4.71752 4.76354 4.77900 4.79767 4.83111 4.93359 4.94920 5.03952 5.16323 5.19971 5.24305 5.27632 5.58189 5.66835 5.81256 6.11054 6.17928 6.27206 6.78234 7.01918 7.11980 7.88469 8.08659 9.22707 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015713 B = 0.003105 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.483690 B = 9015.693211 C = 9266.521605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.116 3.884 3 N -0.127 5.127 4 N -0.292 5.292 5 C 0.053 3.947 6 C -0.069 4.069 7 C -0.064 4.064 8 C 0.603 3.397 9 O -0.553 6.553 10 N -0.599 5.599 11 C 0.043 3.957 12 C 0.049 3.951 13 O -0.384 6.384 14 C 0.090 3.910 15 H 0.084 0.916 16 C 0.179 3.821 17 H 0.064 0.936 18 C -0.150 4.150 19 N -0.744 5.744 20 C -0.219 4.219 21 H 0.062 0.938 22 C -0.063 4.063 23 N -0.984 5.984 24 Si 0.949 3.051 25 H -0.280 1.280 26 H -0.299 1.299 27 H -0.258 1.258 28 C 0.091 3.909 29 N -0.247 5.247 30 H 0.117 0.883 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.152 0.848 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.131 0.869 42 H 0.052 0.948 43 H 0.036 0.964 44 H 0.070 0.930 45 H 0.367 0.633 46 H 0.256 0.744 47 H 0.064 0.936 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.946 -19.803 21.846 33.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.001 4.001 3 N -0.032 5.032 4 N -0.134 5.134 5 C -0.110 4.110 6 C -0.127 4.127 7 C -0.224 4.224 8 C 0.390 3.610 9 O -0.429 6.429 10 N -0.331 5.331 11 C -0.080 4.080 12 C -0.028 4.028 13 O -0.303 6.303 14 C 0.031 3.969 15 H 0.101 0.899 16 C 0.070 3.930 17 H 0.082 0.918 18 C -0.209 4.209 19 N -0.388 5.388 20 C -0.350 4.350 21 H 0.080 0.920 22 C -0.254 4.254 23 N -0.636 5.636 24 Si 0.778 3.222 25 H -0.206 1.206 26 H -0.226 1.226 27 H -0.183 1.183 28 C -0.031 4.031 29 N -0.096 5.096 30 H 0.135 0.865 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.151 0.849 34 H 0.150 0.850 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.100 0.900 38 H 0.168 0.832 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.148 0.852 42 H 0.072 0.928 43 H 0.055 0.945 44 H 0.089 0.911 45 H 0.201 0.799 46 H 0.065 0.935 47 H 0.082 0.918 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -16.066 -20.383 21.856 33.930 hybrid contribution 1.149 0.206 -0.489 1.266 sum -14.916 -20.177 21.367 32.957 Atomic orbital electron populations 1.22181 0.91747 1.05681 1.02763 1.22728 0.97102 0.71909 1.08351 1.48932 1.41461 1.14188 0.98577 1.73961 1.18832 1.04971 1.15652 1.23555 1.00402 0.94634 0.92368 1.20288 1.02994 0.92332 0.97097 1.22655 1.11378 0.93817 0.94592 1.17008 0.77857 0.84962 0.81186 1.90764 1.46075 1.30924 1.75186 1.48059 1.64968 1.14985 1.05119 1.23467 0.98313 0.86121 1.00126 1.23153 0.94995 0.92307 0.92333 1.88013 1.87134 1.21186 1.33926 1.22677 0.95413 0.85546 0.93242 0.89860 1.20472 0.87592 0.94406 0.90482 0.91766 1.22153 0.97694 1.01202 0.99890 1.42711 1.31007 1.04870 1.60185 1.19053 1.04397 0.90111 1.21464 0.92032 1.25375 0.98208 1.01321 1.00522 1.69870 1.19960 1.34648 1.39100 0.85488 0.76370 0.81790 0.78599 1.20606 1.22611 1.18314 1.22246 0.98978 0.90015 0.91896 1.73871 1.15971 1.04180 1.15560 0.86473 0.92461 0.92201 0.84900 0.85013 0.89064 0.88752 0.89995 0.83196 0.91303 0.91898 0.85161 0.92847 0.94467 0.91086 0.79904 0.93536 0.91753 0.88951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.74 10.24 71.98 0.74 -0.01 16 2 C 0.12 0.73 7.24 86.38 0.63 1.36 16 3 N -0.13 -2.15 3.94 -187.50 -0.74 -2.89 16 4 N -0.29 -5.94 12.01 -46.59 -0.56 -6.50 16 5 C 0.05 1.22 7.39 43.32 0.32 1.54 16 6 C -0.07 -1.31 10.05 71.24 0.72 -0.59 16 7 C -0.06 -1.66 6.96 42.24 0.29 -1.36 16 8 C 0.60 18.59 7.72 86.77 0.67 19.26 16 9 O -0.55 -19.73 14.66 -3.90 -0.06 -19.79 16 10 N -0.60 -17.80 3.02 -820.81 -2.48 -20.28 16 11 C 0.04 1.01 6.51 86.35 0.56 1.57 16 12 C 0.05 1.06 6.98 72.08 0.50 1.57 16 13 O -0.38 -11.64 9.22 -148.98 -1.37 -13.01 16 14 C 0.09 2.85 2.53 30.69 0.08 2.93 16 15 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 16 C 0.18 6.78 2.73 44.99 0.12 6.90 16 17 H 0.06 2.50 8.08 -2.39 -0.02 2.48 16 18 C -0.15 -5.16 9.35 71.98 0.67 -4.48 16 19 N -0.74 -35.08 4.09 -322.95 -1.32 -36.40 16 20 C -0.22 -12.55 10.41 84.03 0.87 -11.68 16 21 H 0.06 3.83 8.06 -2.91 -0.02 3.80 16 22 C -0.06 -3.79 5.50 84.86 0.47 -3.33 16 23 N -0.98 -64.25 13.97 21.65 0.30 -63.95 16 24 Si 0.95 47.34 27.74 68.60 1.90 49.24 16 25 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 26 H -0.30 -15.11 7.11 99.48 0.71 -14.41 16 27 H -0.26 -11.91 6.52 99.48 0.65 -11.26 16 28 C 0.09 3.11 5.85 86.35 0.50 3.62 16 29 N -0.25 -5.14 8.53 -48.17 -0.41 -5.55 16 30 H 0.12 -0.11 8.14 -2.39 -0.02 -0.13 16 31 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.13 0.33 8.14 -2.39 -0.02 0.31 16 34 H 0.13 0.35 8.14 -2.39 -0.02 0.34 16 35 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.08 1.86 6.68 -2.38 -0.02 1.85 16 38 H 0.15 3.06 3.88 -56.80 -0.22 2.84 16 39 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.13 2.09 8.14 -2.38 -0.02 2.07 16 42 H 0.05 1.86 7.68 -2.39 -0.02 1.84 16 43 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.37 17.28 5.06 -92.71 -0.47 16.81 16 46 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 47 H 0.06 2.57 7.26 -2.39 -0.02 2.55 16 48 H 0.09 3.29 7.11 -2.39 -0.02 3.28 16 Total: -1.00 -77.69 385.34 2.65 -75.04 By element: Atomic # 1 Polarization: 26.56 SS G_CDS: 0.24 Total: 26.80 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: 7.15 Total: 17.29 kcal Atomic # 7 Polarization: -130.36 SS G_CDS: -5.21 Total: -135.56 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -1.43 Total: -32.80 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 1.90 Total: 49.24 kcal Total: -77.69 2.65 -75.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675628774.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.400 kcal (2) G-P(sol) polarization free energy of solvation -77.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds