Wall clock time and date at job start Tue Mar 31 2020 20:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.47103 * 2 1 4 4 N 1.28517 * 124.44567 * 269.69859 * 3 2 1 5 5 C 1.31127 * 109.06091 * 179.88471 * 4 3 2 6 6 C 1.50709 * 127.11175 * 180.11991 * 5 4 3 7 7 C 1.40916 * 105.78088 * 0.35728 * 5 4 3 8 8 C 1.47800 * 127.24358 * 179.77995 * 7 5 4 9 9 O 1.21561 * 119.99688 * 6.15801 * 8 7 5 10 10 N 1.34777 * 120.00363 * 186.15506 * 8 7 5 11 11 C 1.47153 * 120.98036 * 6.21419 * 10 8 7 12 12 C 1.53709 * 108.15909 * 129.43543 * 11 10 8 13 13 O 1.42960 * 109.15020 * 52.53626 * 12 11 10 14 14 C 1.42963 * 114.16872 * 297.28936 * 13 12 11 15 15 H 1.09003 * 109.54934 * 302.63377 * 14 13 12 16 16 C 1.52995 * 109.51415 * 182.50346 * 14 13 12 17 17 H 1.08997 * 109.47113 * 185.25582 * 16 14 13 18 18 C 1.52995 * 109.47001 * 305.25575 * 16 14 13 19 19 N 1.46503 * 109.46978 * 65.25306 * 16 14 13 20 20 C 1.36940 * 119.99814 * 155.00270 * 19 16 14 21 21 H 1.07995 * 119.99659 * 359.97438 * 20 19 16 22 22 C 1.38814 * 119.99911 * 180.02562 * 20 19 16 23 23 N 1.31614 * 119.99740 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99871 * 359.97438 * 22 20 19 25 25 H 1.48492 * 109.47182 * 90.00315 * 24 22 20 26 26 H 1.48503 * 109.46731 * 210.00011 * 24 22 20 27 27 H 1.48500 * 109.47068 * 329.99960 * 24 22 20 28 28 C 1.47146 * 120.98091 * 186.50063 * 10 8 7 29 29 N 1.28590 * 124.44366 * 89.99466 * 3 2 1 30 30 H 1.09000 * 109.47527 * 300.00581 * 1 2 3 31 31 H 1.09003 * 109.47231 * 60.00338 * 1 2 3 32 32 H 1.08996 * 109.47071 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47607 * 240.00198 * 2 1 3 34 34 H 1.08995 * 109.47040 * 119.99486 * 2 1 3 35 35 H 1.09006 * 109.46893 * 270.29078 * 6 5 4 36 36 H 1.08999 * 109.46863 * 30.28239 * 6 5 4 37 37 H 1.08997 * 109.47564 * 150.29124 * 6 5 4 38 38 H 1.08995 * 109.68155 * 249.21509 * 11 10 8 39 39 H 1.09003 * 109.68070 * 9.76979 * 11 10 8 40 40 H 1.09003 * 109.65307 * 292.56723 * 12 11 10 41 41 H 1.09007 * 109.48461 * 172.40125 * 12 11 10 42 42 H 1.09001 * 109.47290 * 180.02562 * 18 16 14 43 43 H 1.09004 * 109.47397 * 299.99784 * 18 16 14 44 44 H 1.09005 * 109.47397 * 59.99746 * 18 16 14 45 45 H 0.96998 * 120.00006 * 334.99954 * 19 16 14 46 46 H 0.97002 * 120.00054 * 180.02562 * 23 22 20 47 47 H 1.08996 * 109.68631 * 350.23478 * 28 10 8 48 48 H 1.09001 * 109.68197 * 110.75551 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2659 2.0647 -1.0598 5 6 2.6832 3.2581 -0.7120 6 6 3.0830 4.3849 -1.6295 7 6 2.6859 3.2675 0.6972 8 6 3.0804 4.3826 1.5835 9 8 3.3460 5.4703 1.1103 10 7 3.1456 4.1934 2.9163 11 6 2.9616 2.8558 3.5014 12 6 4.1330 2.5868 4.4596 13 8 4.2431 3.6732 5.3824 14 6 4.5415 4.9313 4.7724 15 1 5.4688 4.8507 4.2051 16 6 4.6964 6.0005 5.8557 17 1 4.8312 6.9754 5.3873 18 6 3.4422 6.0244 6.7316 19 7 5.8646 5.6909 6.6839 20 6 6.5124 6.6929 7.3558 21 1 6.1625 7.7114 7.2748 22 6 7.6196 6.3997 8.1401 23 7 8.2425 7.3628 8.7855 24 14 8.2252 4.6381 8.2796 25 1 9.2216 4.3712 7.2114 26 1 8.8575 4.4358 9.6080 27 1 7.0781 3.7070 8.1303 28 6 3.3966 5.3194 3.8298 29 7 2.2606 2.0670 1.0605 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 4.1481 4.3131 -1.8503 36 1 2.5144 4.3173 -2.5569 37 1 2.8760 5.3390 -1.1449 38 1 2.0200 2.8211 4.0494 39 1 2.9540 2.1067 2.7097 40 1 5.0586 2.4969 3.8910 41 1 3.9504 1.6617 5.0065 42 1 3.5523 6.7865 7.5031 43 1 2.5730 6.2548 6.1155 44 1 3.3074 5.0494 7.2000 45 1 6.1790 4.7762 6.7564 46 1 9.0164 7.1580 9.3333 47 1 3.6771 6.2024 3.2557 48 1 2.4979 5.5289 4.4099 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675628775.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:02 Heat of formation + Delta-G solvation = 61.281652 kcal Electronic energy + Delta-G solvation = -30212.857464 eV Core-core repulsion = 26114.042375 eV Total energy + Delta-G solvation = -4098.815090 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.04544 -40.31564 -38.46217 -35.70848 -35.54521 -34.74920 -33.30082 -32.46722 -31.77772 -30.53528 -28.86667 -28.48602 -27.46169 -25.49251 -24.55659 -23.40960 -23.02695 -21.89271 -21.46342 -19.89420 -19.68667 -17.82942 -17.68203 -17.17412 -17.10563 -16.39510 -15.94801 -15.41412 -15.15381 -15.08001 -14.59979 -14.48184 -14.32527 -14.18435 -13.76955 -13.36604 -13.25491 -13.15273 -12.95546 -12.79896 -12.74405 -12.65442 -12.37304 -12.16300 -12.04605 -11.79472 -11.60189 -11.24059 -11.08167 -10.86054 -10.74112 -10.66491 -10.50258 -10.39252 -10.12728 -9.90270 -9.89276 -9.55850 -9.53663 -8.89191 -8.55853 -7.22070 -5.72220 -3.07074 0.95632 1.59520 1.69829 2.67097 2.99774 3.42979 3.48020 3.49030 3.50017 3.91083 4.13999 4.20906 4.36621 4.46417 4.51485 4.64950 4.70069 4.88760 4.97699 5.03680 5.10751 5.12210 5.13613 5.26681 5.32968 5.40328 5.42995 5.52034 5.57588 5.60391 5.64724 5.70506 5.72992 5.76128 5.92542 6.02646 6.14808 6.21900 6.37282 6.38228 6.51412 6.77853 7.09486 7.13967 7.37163 7.74274 7.93573 8.04364 8.47117 9.26498 9.98943 10.20027 11.46058 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019133 B = 0.002684 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.099312 B =10430.355290 C =10933.253950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.132 3.868 3 N -0.143 5.143 4 N -0.290 5.290 5 C 0.063 3.937 6 C -0.071 4.071 7 C -0.042 4.042 8 C 0.608 3.392 9 O -0.523 6.523 10 N -0.598 5.598 11 C 0.058 3.942 12 C 0.046 3.954 13 O -0.363 6.363 14 C 0.072 3.928 15 H 0.065 0.935 16 C 0.190 3.810 17 H 0.069 0.931 18 C -0.163 4.163 19 N -0.744 5.744 20 C -0.241 4.241 21 H 0.091 0.909 22 C 0.005 3.995 23 N -0.935 5.935 24 Si 0.881 3.119 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.273 1.273 28 C 0.084 3.916 29 N -0.249 5.249 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.122 0.878 40 H 0.051 0.949 41 H 0.102 0.898 42 H 0.057 0.943 43 H 0.038 0.962 44 H 0.055 0.945 45 H 0.366 0.634 46 H 0.259 0.741 47 H 0.105 0.895 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.274 -16.851 -20.886 31.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.013 3.987 3 N -0.045 5.045 4 N -0.131 5.131 5 C -0.100 4.100 6 C -0.130 4.130 7 C -0.204 4.204 8 C 0.393 3.607 9 O -0.397 6.397 10 N -0.332 5.332 11 C -0.065 4.065 12 C -0.032 4.032 13 O -0.282 6.282 14 C 0.013 3.987 15 H 0.083 0.917 16 C 0.080 3.920 17 H 0.087 0.913 18 C -0.223 4.223 19 N -0.387 5.387 20 C -0.371 4.371 21 H 0.109 0.891 22 C -0.191 4.191 23 N -0.583 5.583 24 Si 0.712 3.288 25 H -0.212 1.212 26 H -0.219 1.219 27 H -0.199 1.199 28 C -0.038 4.038 29 N -0.097 5.097 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.107 0.893 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.117 0.883 38 H 0.095 0.905 39 H 0.140 0.860 40 H 0.069 0.931 41 H 0.120 0.880 42 H 0.076 0.924 43 H 0.057 0.943 44 H 0.074 0.926 45 H 0.199 0.801 46 H 0.069 0.931 47 H 0.123 0.877 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -17.519 -17.341 -20.841 32.280 hybrid contribution 0.755 -0.713 0.074 1.041 sum -16.764 -18.053 -20.768 32.222 Atomic orbital electron populations 1.22192 0.92770 1.04138 1.03873 1.22125 0.96316 0.74030 1.06205 1.48283 1.43390 1.13473 0.99332 1.73951 1.18682 1.05213 1.15298 1.23280 1.00469 0.93751 0.92540 1.20276 1.02014 0.93828 0.96857 1.22917 1.09573 0.93516 0.94372 1.16707 0.77435 0.85528 0.80989 1.90790 1.49702 1.24750 1.74498 1.47958 1.70065 1.10063 1.05067 1.23138 0.99613 0.84626 0.99173 1.23016 0.96714 0.91334 0.92129 1.88068 1.91495 1.16059 1.32530 1.23023 0.95675 0.85251 0.94790 0.91682 1.20171 0.88372 0.93913 0.89504 0.91274 1.22384 0.97093 1.02246 1.00555 1.42710 1.32118 1.07211 1.56645 1.19082 1.07266 0.89897 1.20857 0.89124 1.24645 0.98126 0.96804 0.99537 1.69701 1.22836 1.30706 1.35015 0.86571 0.78783 0.86364 0.77101 1.21243 1.21858 1.19908 1.22549 1.00038 0.89597 0.91615 1.74245 1.15795 1.04534 1.15150 0.91234 0.91311 0.89318 0.87034 0.87005 0.89994 0.90593 0.88348 0.90517 0.86034 0.93091 0.87958 0.92404 0.94322 0.92552 0.80098 0.93126 0.87709 0.89676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.61 10.24 37.16 0.38 -0.23 16 2 C 0.13 0.58 7.24 -4.04 -0.03 0.55 16 3 N -0.14 -1.30 3.94 -10.62 -0.04 -1.35 16 4 N -0.29 -3.10 12.01 33.92 0.41 -2.69 16 5 C 0.06 0.73 7.39 -81.88 -0.61 0.12 16 6 C -0.07 -0.66 10.06 36.01 0.36 -0.30 16 7 C -0.04 -0.52 6.88 -82.68 -0.57 -1.09 16 8 C 0.61 8.59 7.71 -12.35 -0.10 8.49 16 9 O -0.52 -8.39 14.64 5.31 0.08 -8.31 16 10 N -0.60 -8.02 3.01 -173.15 -0.52 -8.54 16 11 C 0.06 0.66 6.32 -3.32 -0.02 0.63 16 12 C 0.05 0.57 7.00 37.53 0.26 0.83 16 13 O -0.36 -5.92 9.24 -35.23 -0.33 -6.24 16 14 C 0.07 1.19 2.61 -26.58 -0.07 1.12 16 15 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 16 C 0.19 3.69 2.77 -67.93 -0.19 3.51 16 17 H 0.07 1.35 8.08 -51.93 -0.42 0.93 16 18 C -0.16 -2.91 9.06 37.15 0.34 -2.58 16 19 N -0.74 -17.97 4.91 -53.43 -0.26 -18.23 16 20 C -0.24 -6.85 10.41 -15.06 -0.16 -7.01 16 21 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 22 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 23 N -0.93 -29.67 13.97 55.49 0.78 -28.90 16 24 Si 0.88 22.63 27.74 -169.99 -4.71 17.91 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 27 H -0.27 -6.72 6.52 56.52 0.37 -6.35 16 28 C 0.08 1.20 5.84 -3.53 -0.02 1.18 16 29 N -0.25 -2.67 8.68 33.42 0.29 -2.38 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 33 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.11 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.10 1.02 6.67 -51.93 -0.35 0.67 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.12 1.27 4.36 -54.37 -0.24 1.03 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 43 H 0.04 0.57 6.42 -51.93 -0.33 0.24 16 44 H 0.06 1.04 7.55 -51.93 -0.39 0.65 16 45 H 0.37 8.92 5.45 -40.82 -0.22 8.70 16 46 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 47 H 0.10 1.53 7.06 -51.93 -0.37 1.16 16 48 H 0.09 1.14 6.28 -51.93 -0.33 0.81 16 LS Contribution 383.85 15.07 5.78 5.78 Total: -1.00 -35.39 383.85 -6.35 -41.74 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -7.31 Total: 5.94 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: -0.51 Total: 5.27 kcal Atomic # 7 Polarization: -62.73 SS G_CDS: 0.65 Total: -62.08 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.25 Total: -14.56 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.71 Total: 17.91 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.39 -6.35 -41.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675628775.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.023 kcal (2) G-P(sol) polarization free energy of solvation -35.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds