Wall clock time and date at job start Tue Mar 31 2020 20:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.47103 * 2 1 4 4 N 1.28517 * 124.44567 * 269.69859 * 3 2 1 5 5 C 1.31127 * 109.06091 * 179.88471 * 4 3 2 6 6 C 1.50709 * 127.11175 * 180.11991 * 5 4 3 7 7 C 1.40916 * 105.78088 * 0.35728 * 5 4 3 8 8 C 1.47800 * 127.24358 * 179.77995 * 7 5 4 9 9 O 1.21561 * 119.99688 * 6.15801 * 8 7 5 10 10 N 1.34777 * 120.00363 * 186.15506 * 8 7 5 11 11 C 1.47153 * 120.98036 * 6.21419 * 10 8 7 12 12 C 1.53709 * 108.15909 * 129.43543 * 11 10 8 13 13 O 1.42960 * 109.15020 * 52.53626 * 12 11 10 14 14 C 1.42963 * 114.16872 * 297.28936 * 13 12 11 15 15 H 1.09003 * 109.54934 * 302.63377 * 14 13 12 16 16 C 1.52995 * 109.51415 * 182.50346 * 14 13 12 17 17 H 1.08997 * 109.47113 * 185.25582 * 16 14 13 18 18 C 1.52995 * 109.47001 * 305.25575 * 16 14 13 19 19 N 1.46503 * 109.46978 * 65.25306 * 16 14 13 20 20 C 1.36940 * 119.99814 * 155.00270 * 19 16 14 21 21 H 1.07995 * 119.99659 * 359.97438 * 20 19 16 22 22 C 1.38814 * 119.99911 * 180.02562 * 20 19 16 23 23 N 1.31614 * 119.99740 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99871 * 359.97438 * 22 20 19 25 25 H 1.48492 * 109.47182 * 90.00315 * 24 22 20 26 26 H 1.48503 * 109.46731 * 210.00011 * 24 22 20 27 27 H 1.48500 * 109.47068 * 329.99960 * 24 22 20 28 28 C 1.47146 * 120.98091 * 186.50063 * 10 8 7 29 29 N 1.28590 * 124.44366 * 89.99466 * 3 2 1 30 30 H 1.09000 * 109.47527 * 300.00581 * 1 2 3 31 31 H 1.09003 * 109.47231 * 60.00338 * 1 2 3 32 32 H 1.08996 * 109.47071 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47607 * 240.00198 * 2 1 3 34 34 H 1.08995 * 109.47040 * 119.99486 * 2 1 3 35 35 H 1.09006 * 109.46893 * 270.29078 * 6 5 4 36 36 H 1.08999 * 109.46863 * 30.28239 * 6 5 4 37 37 H 1.08997 * 109.47564 * 150.29124 * 6 5 4 38 38 H 1.08995 * 109.68155 * 249.21509 * 11 10 8 39 39 H 1.09003 * 109.68070 * 9.76979 * 11 10 8 40 40 H 1.09003 * 109.65307 * 292.56723 * 12 11 10 41 41 H 1.09007 * 109.48461 * 172.40125 * 12 11 10 42 42 H 1.09001 * 109.47290 * 180.02562 * 18 16 14 43 43 H 1.09004 * 109.47397 * 299.99784 * 18 16 14 44 44 H 1.09005 * 109.47397 * 59.99746 * 18 16 14 45 45 H 0.96998 * 120.00006 * 334.99954 * 19 16 14 46 46 H 0.97002 * 120.00054 * 180.02562 * 23 22 20 47 47 H 1.08996 * 109.68631 * 350.23478 * 28 10 8 48 48 H 1.09001 * 109.68197 * 110.75551 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2659 2.0647 -1.0598 5 6 2.6832 3.2581 -0.7120 6 6 3.0830 4.3849 -1.6295 7 6 2.6859 3.2675 0.6972 8 6 3.0804 4.3826 1.5835 9 8 3.3460 5.4703 1.1103 10 7 3.1456 4.1934 2.9163 11 6 2.9616 2.8558 3.5014 12 6 4.1330 2.5868 4.4596 13 8 4.2431 3.6732 5.3824 14 6 4.5415 4.9313 4.7724 15 1 5.4688 4.8507 4.2051 16 6 4.6964 6.0005 5.8557 17 1 4.8312 6.9754 5.3873 18 6 3.4422 6.0244 6.7316 19 7 5.8646 5.6909 6.6839 20 6 6.5124 6.6929 7.3558 21 1 6.1625 7.7114 7.2748 22 6 7.6196 6.3997 8.1401 23 7 8.2425 7.3628 8.7855 24 14 8.2252 4.6381 8.2796 25 1 9.2216 4.3712 7.2114 26 1 8.8575 4.4358 9.6080 27 1 7.0781 3.7070 8.1303 28 6 3.3966 5.3194 3.8298 29 7 2.2606 2.0670 1.0605 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 4.1481 4.3131 -1.8503 36 1 2.5144 4.3173 -2.5569 37 1 2.8760 5.3390 -1.1449 38 1 2.0200 2.8211 4.0494 39 1 2.9540 2.1067 2.7097 40 1 5.0586 2.4969 3.8910 41 1 3.9504 1.6617 5.0065 42 1 3.5523 6.7865 7.5031 43 1 2.5730 6.2548 6.1155 44 1 3.3074 5.0494 7.2000 45 1 6.1790 4.7762 6.7564 46 1 9.0164 7.1580 9.3333 47 1 3.6771 6.2024 3.2557 48 1 2.4979 5.5289 4.4099 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675628775.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:01 Heat of formation + Delta-G solvation = 35.467099 kcal Electronic energy + Delta-G solvation = -30213.976867 eV Core-core repulsion = 26114.042375 eV Total energy + Delta-G solvation = -4099.934493 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.82901 -41.42907 -39.65687 -37.28809 -36.11731 -35.94441 -34.42817 -34.02254 -32.57370 -32.08944 -30.22652 -29.40272 -28.47689 -26.64726 -25.76893 -24.79246 -23.88228 -23.08700 -22.20862 -21.39545 -20.74359 -19.76692 -18.50949 -18.17310 -17.91930 -17.58322 -17.09754 -16.67024 -16.35584 -16.27621 -15.82700 -15.62941 -15.37959 -15.04193 -14.85091 -14.57190 -14.48143 -14.29048 -14.20369 -13.95239 -13.84945 -13.46575 -13.32936 -13.22170 -13.02206 -12.92615 -12.62978 -12.48603 -12.39821 -12.34368 -12.10837 -12.04370 -11.79438 -11.68747 -11.53868 -11.43594 -11.28026 -10.99300 -10.97169 -10.33167 -9.65839 -9.31073 -8.00455 -5.32966 0.07949 0.76458 1.09129 1.38669 1.40624 1.49278 1.68194 1.99223 2.50018 2.65263 2.76095 3.31815 3.35655 3.44617 3.66793 3.86642 3.90571 3.90725 3.93213 3.97427 4.08601 4.20581 4.25204 4.35180 4.39093 4.42506 4.55211 4.61239 4.63220 4.70308 4.71898 4.75787 4.77634 4.84313 4.93560 4.94507 5.06164 5.15494 5.22055 5.25688 5.27109 5.59680 5.62634 5.78953 6.10048 6.16659 6.25097 6.79272 7.03221 7.09676 7.86031 8.06133 9.21009 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019133 B = 0.002684 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.099312 B =10430.355290 C =10933.253950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.117 3.883 3 N -0.129 5.129 4 N -0.296 5.296 5 C 0.051 3.949 6 C -0.069 4.069 7 C -0.068 4.068 8 C 0.606 3.394 9 O -0.551 6.551 10 N -0.600 5.600 11 C 0.064 3.936 12 C 0.042 3.958 13 O -0.381 6.381 14 C 0.086 3.914 15 H 0.050 0.950 16 C 0.181 3.819 17 H 0.064 0.936 18 C -0.151 4.151 19 N -0.748 5.748 20 C -0.225 4.225 21 H 0.061 0.939 22 C -0.064 4.064 23 N -0.984 5.984 24 Si 0.951 3.049 25 H -0.281 1.281 26 H -0.296 1.296 27 H -0.254 1.254 28 C 0.093 3.907 29 N -0.243 5.243 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.117 0.883 33 H 0.131 0.869 34 H 0.134 0.866 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.133 0.867 40 H 0.046 0.954 41 H 0.131 0.869 42 H 0.034 0.966 43 H 0.073 0.927 44 H 0.053 0.947 45 H 0.366 0.634 46 H 0.257 0.743 47 H 0.097 0.903 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.942 -20.320 -22.173 35.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.000 4.000 3 N -0.033 5.033 4 N -0.138 5.138 5 C -0.111 4.111 6 C -0.127 4.127 7 C -0.228 4.228 8 C 0.393 3.607 9 O -0.428 6.428 10 N -0.333 5.333 11 C -0.059 4.059 12 C -0.035 4.035 13 O -0.300 6.300 14 C 0.027 3.973 15 H 0.068 0.932 16 C 0.073 3.927 17 H 0.081 0.919 18 C -0.210 4.210 19 N -0.391 5.391 20 C -0.356 4.356 21 H 0.079 0.921 22 C -0.256 4.256 23 N -0.635 5.635 24 Si 0.779 3.221 25 H -0.207 1.207 26 H -0.222 1.222 27 H -0.179 1.179 28 C -0.030 4.030 29 N -0.093 5.093 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.135 0.865 33 H 0.149 0.851 34 H 0.152 0.848 35 H 0.106 0.894 36 H 0.112 0.888 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.151 0.849 40 H 0.065 0.935 41 H 0.149 0.851 42 H 0.054 0.946 43 H 0.092 0.908 44 H 0.072 0.928 45 H 0.200 0.800 46 H 0.066 0.934 47 H 0.115 0.885 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -19.240 -20.841 -22.165 35.997 hybrid contribution 1.151 0.296 0.381 1.248 sum -18.090 -20.545 -21.784 34.984 Atomic orbital electron populations 1.22172 0.91980 1.05604 1.02604 1.22703 0.96932 0.71954 1.08367 1.48883 1.41456 1.14387 0.98607 1.73961 1.18924 1.05069 1.15798 1.23569 1.00518 0.94479 0.92549 1.20287 1.02659 0.92642 0.97151 1.22683 1.11670 0.93896 0.94533 1.16935 0.76909 0.85678 0.81222 1.90768 1.50985 1.25985 1.75031 1.48015 1.69811 1.10590 1.04866 1.23225 0.99666 0.83734 0.99229 1.23282 0.96994 0.91061 0.92188 1.88024 1.91556 1.16438 1.33958 1.22620 0.96073 0.85075 0.93556 0.93229 1.20389 0.87373 0.94985 0.89978 0.91852 1.22208 0.97466 1.01303 1.00026 1.42718 1.33334 1.06182 1.56891 1.19055 1.06833 0.89700 1.20002 0.92099 1.25438 0.98861 1.01238 1.00022 1.69874 1.23763 1.33156 1.36664 0.85453 0.78608 0.81330 0.76718 1.20738 1.22238 1.17871 1.22353 0.99501 0.89775 0.91363 1.74147 1.15466 1.03998 1.15666 0.92426 0.92570 0.86483 0.85068 0.84752 0.89412 0.88816 0.89697 0.89254 0.84944 0.93530 0.85080 0.94645 0.90835 0.92817 0.80026 0.93431 0.88474 0.88368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.71 10.24 71.98 0.74 0.02 16 2 C 0.12 0.65 7.24 86.38 0.63 1.28 16 3 N -0.13 -2.04 3.94 -187.50 -0.74 -2.78 16 4 N -0.30 -5.77 12.01 -46.59 -0.56 -6.33 16 5 C 0.05 1.13 7.39 43.32 0.32 1.45 16 6 C -0.07 -1.24 10.06 71.24 0.72 -0.53 16 7 C -0.07 -1.61 6.88 42.24 0.29 -1.32 16 8 C 0.61 16.71 7.71 86.77 0.67 17.38 16 9 O -0.55 -17.81 14.64 -3.91 -0.06 -17.86 16 10 N -0.60 -15.20 3.01 -820.01 -2.47 -17.67 16 11 C 0.06 1.28 6.32 86.49 0.55 1.82 16 12 C 0.04 0.92 7.00 72.22 0.51 1.43 16 13 O -0.38 -11.57 9.24 -148.98 -1.38 -12.95 16 14 C 0.09 2.76 2.61 30.69 0.08 2.84 16 15 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 16 C 0.18 6.96 2.77 44.99 0.12 7.08 16 17 H 0.06 2.50 8.08 -2.39 -0.02 2.48 16 18 C -0.15 -5.21 9.06 71.98 0.65 -4.56 16 19 N -0.75 -35.98 4.91 -322.95 -1.59 -37.57 16 20 C -0.22 -13.04 10.41 84.03 0.87 -12.16 16 21 H 0.06 3.82 8.06 -2.91 -0.02 3.80 16 22 C -0.06 -3.88 5.50 84.86 0.47 -3.41 16 23 N -0.98 -64.15 13.97 21.65 0.30 -63.85 16 24 Si 0.95 47.03 27.74 68.60 1.90 48.93 16 25 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 26 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 27 H -0.25 -11.60 6.52 99.48 0.65 -10.96 16 28 C 0.09 2.53 5.84 86.36 0.50 3.03 16 29 N -0.24 -4.67 8.68 -48.17 -0.42 -5.09 16 30 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.06 0.40 8.14 -2.39 -0.02 0.39 16 32 H 0.12 -0.14 8.14 -2.39 -0.02 -0.16 16 33 H 0.13 0.26 8.14 -2.39 -0.02 0.24 16 34 H 0.13 0.18 8.14 -2.39 -0.02 0.16 16 35 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 36 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.08 1.78 6.67 -2.39 -0.02 1.76 16 38 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.13 2.39 4.36 -5.54 -0.02 2.37 16 40 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.13 2.13 8.14 -2.38 -0.02 2.11 16 42 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.07 2.02 6.42 -2.39 -0.02 2.00 16 44 H 0.05 1.89 7.55 -2.38 -0.02 1.87 16 45 H 0.37 17.43 5.45 -92.71 -0.51 16.93 16 46 H 0.26 15.98 8.31 -92.71 -0.77 15.20 16 47 H 0.10 2.81 7.06 -2.39 -0.02 2.80 16 48 H 0.10 2.41 6.28 -2.39 -0.01 2.39 16 Total: -1.00 -78.02 383.85 2.52 -75.50 By element: Atomic # 1 Polarization: 24.91 SS G_CDS: 0.40 Total: 25.32 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: 7.11 Total: 14.35 kcal Atomic # 7 Polarization: -127.81 SS G_CDS: -5.47 Total: -133.29 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: -1.43 Total: -30.81 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 1.90 Total: 48.93 kcal Total: -78.02 2.52 -75.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675628775.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.969 kcal (2) G-P(sol) polarization free energy of solvation -78.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds