Wall clock time and date at job start Tue Mar 31 2020 20:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46507 * 109.46743 * 2 1 4 4 N 1.28514 * 124.43869 * 269.97481 * 3 2 1 5 5 C 1.31141 * 109.05463 * 179.73655 * 4 3 2 6 6 C 1.50699 * 127.11128 * 180.29146 * 5 4 3 7 7 C 1.40925 * 105.77596 * 0.43233 * 5 4 3 8 8 C 1.47796 * 127.23748 * 179.83836 * 7 5 4 9 9 O 1.21561 * 119.99875 * 353.80455 * 8 7 5 10 10 N 1.34772 * 120.00040 * 173.80990 * 8 7 5 11 11 C 1.47151 * 120.98471 * 353.50221 * 10 8 7 12 12 C 1.53289 * 108.38510 * 230.55778 * 11 10 8 13 13 O 1.42956 * 109.22306 * 307.69264 * 12 11 10 14 14 C 1.42962 * 114.16709 * 62.58601 * 13 12 11 15 15 H 1.08998 * 109.55745 * 57.36289 * 14 13 12 16 16 C 1.53000 * 109.51462 * 177.49953 * 14 13 12 17 17 H 1.09002 * 109.46938 * 184.74191 * 16 14 13 18 18 C 1.52999 * 109.46698 * 304.73784 * 16 14 13 19 19 N 1.46499 * 109.47432 * 64.74001 * 16 14 13 20 20 C 1.36936 * 119.99756 * 154.99991 * 19 16 14 21 21 H 1.07999 * 120.00274 * 0.02562 * 20 19 16 22 22 C 1.38811 * 119.99804 * 180.27472 * 20 19 16 23 23 N 1.31622 * 119.99987 * 359.72570 * 22 20 19 24 24 Si 1.86796 * 120.00174 * 179.72778 * 22 20 19 25 25 H 1.48498 * 109.47062 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47592 * 119.99823 * 24 22 20 27 27 H 1.48505 * 109.47158 * 240.00036 * 24 22 20 28 28 C 1.47152 * 120.98293 * 173.52211 * 10 8 7 29 29 N 1.28588 * 124.44404 * 90.00249 * 3 2 1 30 30 H 1.09003 * 109.47713 * 299.99751 * 1 2 3 31 31 H 1.09004 * 109.47376 * 60.00045 * 1 2 3 32 32 H 1.09007 * 109.47229 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47128 * 239.99972 * 2 1 3 34 34 H 1.08993 * 109.46960 * 119.99647 * 2 1 3 35 35 H 1.09000 * 109.47423 * 270.16553 * 6 5 4 36 36 H 1.08992 * 109.47394 * 30.17131 * 6 5 4 37 37 H 1.08996 * 109.47158 * 150.17273 * 6 5 4 38 38 H 1.09004 * 109.67841 * 350.27900 * 11 10 8 39 39 H 1.09003 * 109.68585 * 110.79438 * 11 10 8 40 40 H 1.09003 * 109.51665 * 67.62197 * 12 11 10 41 41 H 1.09000 * 109.51411 * 187.77033 * 12 11 10 42 42 H 1.09002 * 109.47094 * 60.00502 * 18 16 14 43 43 H 1.09001 * 109.47065 * 180.02562 * 18 16 14 44 44 H 1.09001 * 109.47306 * 300.00123 * 18 16 14 45 45 H 0.96997 * 120.00128 * 335.00252 * 19 16 14 46 46 H 0.97007 * 120.00126 * 180.02562 * 23 22 20 47 47 H 1.09000 * 109.68106 * 9.72125 * 28 10 8 48 48 H 1.08999 * 109.71358 * 249.18469 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 7 2.2609 2.0664 -1.0599 5 6 2.6768 3.2605 -0.7120 6 6 3.0678 4.3902 -1.6295 7 6 2.6856 3.2676 0.6972 8 6 3.0800 4.3827 1.5834 9 8 3.5534 5.3972 1.1099 10 7 2.9148 4.2747 2.9166 11 6 2.2160 3.1197 3.5023 12 6 1.1421 3.6409 4.4640 13 8 1.7399 4.5555 5.3859 14 6 2.2945 5.7233 4.7755 15 1 1.5202 6.2423 4.2105 16 6 2.8470 6.6525 5.8582 17 1 3.1932 7.5789 5.3998 18 6 1.7450 6.9659 6.8722 19 7 3.9659 5.9970 6.5399 20 6 4.9288 6.7511 7.1558 21 1 4.8631 7.8290 7.1394 22 6 5.9920 6.1302 7.7968 23 7 6.0717 4.8166 7.8172 24 14 7.3095 7.1589 8.6306 25 1 6.9909 8.5998 8.4652 26 1 7.3572 6.8248 10.0767 27 1 8.6284 6.8699 8.0120 28 6 3.4274 5.3086 3.8297 29 7 2.2607 2.0670 1.0604 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 4.1321 4.3234 -1.8550 36 1 2.4954 4.3218 -2.5545 37 1 2.8588 5.3427 -1.1425 38 1 1.7474 2.5343 2.7111 39 1 2.9268 2.4980 4.0469 40 1 0.3632 4.1516 3.8978 41 1 0.7066 2.8049 5.0112 42 1 1.3988 6.0395 7.3305 43 1 2.1385 7.6282 7.6433 44 1 0.9125 7.4536 6.3650 45 1 4.0247 5.0290 6.5549 46 1 6.8146 4.3826 8.2655 47 1 3.7610 6.1728 3.2554 48 1 4.2603 4.9083 4.4078 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675628776.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:05 Heat of formation + Delta-G solvation = 57.515840 kcal Electronic energy + Delta-G solvation = -30455.415786 eV Core-core repulsion = 26356.437399 eV Total energy + Delta-G solvation = -4098.978387 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.89621 -40.07646 -38.25597 -35.49329 -35.41260 -34.57628 -33.11733 -32.25767 -31.66795 -30.08769 -28.49547 -28.33854 -27.59420 -25.30443 -24.01962 -23.46419 -23.01642 -21.93400 -21.30241 -19.73353 -19.47298 -17.64360 -17.38181 -17.08517 -16.79117 -16.19240 -15.65998 -15.36193 -14.96743 -14.82040 -14.58414 -14.24657 -14.07613 -13.90441 -13.66943 -13.32115 -13.12185 -13.06798 -12.88991 -12.87225 -12.58872 -12.35894 -12.01896 -11.91454 -11.84093 -11.64569 -11.31814 -11.14618 -10.87552 -10.79502 -10.72733 -10.48480 -10.35895 -10.23987 -10.06533 -9.82767 -9.69366 -9.53902 -9.41390 -8.89025 -8.30004 -6.88975 -5.70630 -2.98933 1.12831 1.73863 1.84195 2.93046 3.19915 3.47363 3.53296 3.55189 3.63666 4.08082 4.29285 4.31774 4.51021 4.59248 4.63902 4.66011 4.95904 5.01496 5.13599 5.18946 5.27177 5.29088 5.39549 5.48134 5.49277 5.50095 5.53744 5.61657 5.70924 5.76218 5.77800 5.89184 5.97269 6.04238 6.14351 6.26904 6.37596 6.45203 6.47430 6.64470 6.72155 6.83535 7.19227 7.39951 7.54472 7.76401 7.90854 8.15151 8.47495 9.59811 10.16740 10.53721 11.51701 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015869 B = 0.002874 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.970396 B = 9739.505665 C =10090.232782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.132 3.868 3 N -0.144 5.144 4 N -0.292 5.292 5 C 0.060 3.940 6 C -0.067 4.067 7 C -0.039 4.039 8 C 0.605 3.395 9 O -0.527 6.527 10 N -0.596 5.596 11 C 0.056 3.944 12 C 0.050 3.950 13 O -0.360 6.360 14 C 0.078 3.922 15 H 0.055 0.945 16 C 0.183 3.817 17 H 0.061 0.939 18 C -0.159 4.159 19 N -0.718 5.718 20 C -0.237 4.237 21 H 0.071 0.929 22 C -0.013 4.013 23 N -0.930 5.930 24 Si 0.904 3.096 25 H -0.281 1.281 26 H -0.293 1.293 27 H -0.293 1.293 28 C 0.086 3.914 29 N -0.248 5.248 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.120 0.880 39 H 0.079 0.921 40 H 0.046 0.954 41 H 0.101 0.899 42 H 0.056 0.944 43 H 0.053 0.947 44 H 0.032 0.968 45 H 0.389 0.611 46 H 0.253 0.747 47 H 0.099 0.901 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.812 -9.903 -18.070 24.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.013 3.987 3 N -0.046 5.046 4 N -0.133 5.133 5 C -0.103 4.103 6 C -0.126 4.126 7 C -0.201 4.201 8 C 0.390 3.610 9 O -0.402 6.402 10 N -0.328 5.328 11 C -0.067 4.067 12 C -0.029 4.029 13 O -0.278 6.278 14 C 0.019 3.981 15 H 0.073 0.927 16 C 0.072 3.928 17 H 0.078 0.922 18 C -0.219 4.219 19 N -0.361 5.361 20 C -0.368 4.368 21 H 0.089 0.911 22 C -0.209 4.209 23 N -0.579 5.579 24 Si 0.736 3.264 25 H -0.206 1.206 26 H -0.220 1.220 27 H -0.220 1.220 28 C -0.035 4.035 29 N -0.096 5.096 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.113 0.887 38 H 0.137 0.863 39 H 0.098 0.902 40 H 0.064 0.936 41 H 0.119 0.881 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.051 0.949 45 H 0.224 0.776 46 H 0.063 0.937 47 H 0.117 0.883 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.865 -10.546 -18.054 25.088 hybrid contribution 1.010 0.710 0.391 1.295 sum -12.855 -9.837 -17.663 23.958 Atomic orbital electron populations 1.22195 0.92846 1.04098 1.03816 1.22107 0.96214 0.74153 1.06209 1.48273 1.43631 1.13360 0.99363 1.73927 1.18906 1.05095 1.15372 1.23260 1.00667 0.93774 0.92599 1.20214 1.02110 0.93588 0.96667 1.22995 1.09200 0.93552 0.94350 1.16703 0.78628 0.84536 0.81111 1.90780 1.45663 1.29168 1.74584 1.48019 1.55968 1.23825 1.05014 1.23037 0.96198 0.88480 0.99032 1.22894 0.93982 0.93902 0.92076 1.88094 1.75658 1.31789 1.32296 1.22911 0.93667 0.86833 0.94699 0.92700 1.20263 0.88902 0.93112 0.90531 0.92170 1.22323 0.97967 1.01301 1.00336 1.42426 1.23466 1.06385 1.63780 1.19285 1.00385 0.90562 1.26551 0.91130 1.24718 0.99008 0.95565 1.01601 1.69686 1.32571 1.07007 1.48604 0.86156 0.81995 0.79257 0.79017 1.20587 1.22014 1.21994 1.22536 0.97989 0.91886 0.91081 1.74288 1.15655 1.04649 1.14997 0.91230 0.91364 0.89364 0.87122 0.86971 0.89952 0.90752 0.88719 0.86273 0.90239 0.93598 0.88073 0.92480 0.92827 0.94888 0.77598 0.93685 0.88304 0.88037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.77 10.24 37.16 0.38 -0.39 16 2 C 0.13 0.75 7.24 -4.04 -0.03 0.72 16 3 N -0.14 -1.53 3.94 -10.61 -0.04 -1.57 16 4 N -0.29 -3.49 12.01 33.92 0.41 -3.08 16 5 C 0.06 0.78 7.39 -81.87 -0.61 0.18 16 6 C -0.07 -0.71 9.95 36.01 0.36 -0.35 16 7 C -0.04 -0.55 6.88 -82.68 -0.57 -1.12 16 8 C 0.61 9.94 7.71 -12.35 -0.10 9.84 16 9 O -0.53 -9.63 14.76 5.31 0.08 -9.56 16 10 N -0.60 -9.64 3.02 -173.41 -0.52 -10.16 16 11 C 0.06 0.78 6.29 -3.54 -0.02 0.75 16 12 C 0.05 0.66 6.98 37.31 0.26 0.93 16 13 O -0.36 -6.30 9.24 -35.23 -0.33 -6.63 16 14 C 0.08 1.37 2.57 -26.58 -0.07 1.30 16 15 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 16 C 0.18 3.67 2.80 -67.93 -0.19 3.48 16 17 H 0.06 1.20 8.08 -51.93 -0.42 0.78 16 18 C -0.16 -2.99 9.30 37.16 0.35 -2.64 16 19 N -0.72 -17.83 4.24 -53.43 -0.23 -18.06 16 20 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 21 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 22 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 23 N -0.93 -28.12 13.06 55.49 0.72 -27.40 16 24 Si 0.90 22.56 29.55 -169.99 -5.02 17.54 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 27 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 28 C 0.09 1.57 5.84 -3.53 -0.02 1.55 16 29 N -0.25 -3.10 8.68 33.42 0.29 -2.81 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.09 1.08 6.90 -51.93 -0.36 0.72 16 38 H 0.12 1.48 4.37 -54.14 -0.24 1.24 16 39 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.06 1.12 7.57 -51.93 -0.39 0.73 16 43 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 44 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.39 10.45 7.08 -40.82 -0.29 10.16 16 46 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 47 H 0.10 1.84 7.06 -51.93 -0.37 1.47 16 48 H 0.10 2.16 6.94 -51.93 -0.36 1.80 16 LS Contribution 388.43 15.07 5.85 5.85 Total: -1.00 -33.71 388.43 -6.75 -40.46 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -7.47 Total: 8.28 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: -0.50 Total: 7.13 kcal Atomic # 7 Polarization: -63.72 SS G_CDS: 0.63 Total: -63.09 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.25 Total: -16.18 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.71 -6.75 -40.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675628776.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.979 kcal (2) G-P(sol) polarization free energy of solvation -33.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds