Wall clock time and date at job start Tue Mar 31 2020 20:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46507 * 109.46743 * 2 1 4 4 N 1.28514 * 124.43869 * 269.97481 * 3 2 1 5 5 C 1.31141 * 109.05463 * 179.73655 * 4 3 2 6 6 C 1.50699 * 127.11128 * 180.29146 * 5 4 3 7 7 C 1.40925 * 105.77596 * 0.43233 * 5 4 3 8 8 C 1.47796 * 127.23748 * 179.83836 * 7 5 4 9 9 O 1.21561 * 119.99875 * 353.80455 * 8 7 5 10 10 N 1.34772 * 120.00040 * 173.80990 * 8 7 5 11 11 C 1.47151 * 120.98471 * 353.50221 * 10 8 7 12 12 C 1.53289 * 108.38510 * 230.55778 * 11 10 8 13 13 O 1.42956 * 109.22306 * 307.69264 * 12 11 10 14 14 C 1.42962 * 114.16709 * 62.58601 * 13 12 11 15 15 H 1.08998 * 109.55745 * 57.36289 * 14 13 12 16 16 C 1.53000 * 109.51462 * 177.49953 * 14 13 12 17 17 H 1.09002 * 109.46938 * 184.74191 * 16 14 13 18 18 C 1.52999 * 109.46698 * 304.73784 * 16 14 13 19 19 N 1.46499 * 109.47432 * 64.74001 * 16 14 13 20 20 C 1.36936 * 119.99756 * 154.99991 * 19 16 14 21 21 H 1.07999 * 120.00274 * 0.02562 * 20 19 16 22 22 C 1.38811 * 119.99804 * 180.27472 * 20 19 16 23 23 N 1.31622 * 119.99987 * 359.72570 * 22 20 19 24 24 Si 1.86796 * 120.00174 * 179.72778 * 22 20 19 25 25 H 1.48498 * 109.47062 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47592 * 119.99823 * 24 22 20 27 27 H 1.48505 * 109.47158 * 240.00036 * 24 22 20 28 28 C 1.47152 * 120.98293 * 173.52211 * 10 8 7 29 29 N 1.28588 * 124.44404 * 90.00249 * 3 2 1 30 30 H 1.09003 * 109.47713 * 299.99751 * 1 2 3 31 31 H 1.09004 * 109.47376 * 60.00045 * 1 2 3 32 32 H 1.09007 * 109.47229 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47128 * 239.99972 * 2 1 3 34 34 H 1.08993 * 109.46960 * 119.99647 * 2 1 3 35 35 H 1.09000 * 109.47423 * 270.16553 * 6 5 4 36 36 H 1.08992 * 109.47394 * 30.17131 * 6 5 4 37 37 H 1.08996 * 109.47158 * 150.17273 * 6 5 4 38 38 H 1.09004 * 109.67841 * 350.27900 * 11 10 8 39 39 H 1.09003 * 109.68585 * 110.79438 * 11 10 8 40 40 H 1.09003 * 109.51665 * 67.62197 * 12 11 10 41 41 H 1.09000 * 109.51411 * 187.77033 * 12 11 10 42 42 H 1.09002 * 109.47094 * 60.00502 * 18 16 14 43 43 H 1.09001 * 109.47065 * 180.02562 * 18 16 14 44 44 H 1.09001 * 109.47306 * 300.00123 * 18 16 14 45 45 H 0.96997 * 120.00128 * 335.00252 * 19 16 14 46 46 H 0.97007 * 120.00126 * 180.02562 * 23 22 20 47 47 H 1.09000 * 109.68106 * 9.72125 * 28 10 8 48 48 H 1.08999 * 109.71358 * 249.18469 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 7 2.2609 2.0664 -1.0599 5 6 2.6768 3.2605 -0.7120 6 6 3.0678 4.3902 -1.6295 7 6 2.6856 3.2676 0.6972 8 6 3.0800 4.3827 1.5834 9 8 3.5534 5.3972 1.1099 10 7 2.9148 4.2747 2.9166 11 6 2.2160 3.1197 3.5023 12 6 1.1421 3.6409 4.4640 13 8 1.7399 4.5555 5.3859 14 6 2.2945 5.7233 4.7755 15 1 1.5202 6.2423 4.2105 16 6 2.8470 6.6525 5.8582 17 1 3.1932 7.5789 5.3998 18 6 1.7450 6.9659 6.8722 19 7 3.9659 5.9970 6.5399 20 6 4.9288 6.7511 7.1558 21 1 4.8631 7.8290 7.1394 22 6 5.9920 6.1302 7.7968 23 7 6.0717 4.8166 7.8172 24 14 7.3095 7.1589 8.6306 25 1 6.9909 8.5998 8.4652 26 1 7.3572 6.8248 10.0767 27 1 8.6284 6.8699 8.0120 28 6 3.4274 5.3086 3.8297 29 7 2.2607 2.0670 1.0604 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 4.1321 4.3234 -1.8550 36 1 2.4954 4.3218 -2.5545 37 1 2.8588 5.3427 -1.1425 38 1 1.7474 2.5343 2.7111 39 1 2.9268 2.4980 4.0469 40 1 0.3632 4.1516 3.8978 41 1 0.7066 2.8049 5.0112 42 1 1.3988 6.0395 7.3305 43 1 2.1385 7.6282 7.6433 44 1 0.9125 7.4536 6.3650 45 1 4.0247 5.0290 6.5549 46 1 6.8146 4.3826 8.2655 47 1 3.7610 6.1728 3.2554 48 1 4.2603 4.9083 4.4078 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675628776.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:04 Heat of formation + Delta-G solvation = 33.930584 kcal Electronic energy + Delta-G solvation = -30456.438520 eV Core-core repulsion = 26356.437399 eV Total energy + Delta-G solvation = -4100.001121 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.82764 -41.37875 -39.59673 -37.12683 -36.11134 -35.93805 -34.22288 -34.00868 -32.47025 -31.57557 -30.12003 -29.51733 -28.64194 -26.39795 -25.65978 -24.98182 -23.90668 -23.09631 -22.18653 -21.25064 -20.71534 -19.34876 -18.47457 -18.32180 -17.76595 -17.55075 -16.98112 -16.74139 -16.26723 -16.05555 -15.80878 -15.54806 -15.23357 -15.08958 -14.88456 -14.71191 -14.44753 -14.15055 -14.02409 -13.85200 -13.52523 -13.47061 -13.18069 -13.04932 -13.01308 -12.79177 -12.62015 -12.54800 -12.48243 -12.31964 -12.11428 -12.00172 -11.73018 -11.66838 -11.53188 -11.39826 -11.17040 -10.96743 -10.93164 -10.33051 -9.63598 -8.93653 -7.88273 -5.15488 0.08299 0.76690 1.09810 1.49081 1.49536 1.59197 1.72189 1.99452 2.59370 2.67312 2.81925 3.40168 3.46074 3.64896 3.71589 3.91235 3.93991 3.94895 3.99113 4.02255 4.17118 4.20805 4.29226 4.36760 4.39348 4.49971 4.56843 4.64477 4.71542 4.72461 4.78188 4.79473 4.84337 4.86791 4.94441 5.01233 5.11926 5.16921 5.22194 5.26712 5.28985 5.56682 5.61873 5.64271 6.15080 6.25537 6.33687 6.80145 7.03547 7.40383 8.15815 8.41009 9.35197 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015869 B = 0.002874 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.970396 B = 9739.505665 C =10090.232782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.116 3.884 3 N -0.128 5.128 4 N -0.293 5.293 5 C 0.052 3.948 6 C -0.065 4.065 7 C -0.067 4.067 8 C 0.603 3.397 9 O -0.554 6.554 10 N -0.598 5.598 11 C 0.060 3.940 12 C 0.048 3.952 13 O -0.382 6.382 14 C 0.092 3.908 15 H 0.078 0.922 16 C 0.174 3.826 17 H 0.063 0.937 18 C -0.147 4.147 19 N -0.727 5.727 20 C -0.231 4.231 21 H 0.077 0.923 22 C -0.076 4.076 23 N -0.968 5.968 24 Si 0.967 3.033 25 H -0.266 1.266 26 H -0.296 1.296 27 H -0.298 1.298 28 C 0.097 3.903 29 N -0.247 5.247 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.117 0.883 33 H 0.132 0.868 34 H 0.130 0.870 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.138 0.862 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.128 0.872 42 H 0.045 0.955 43 H 0.039 0.961 44 H 0.067 0.933 45 H 0.376 0.624 46 H 0.248 0.752 47 H 0.089 0.911 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.660 -10.622 -19.255 26.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.001 4.001 3 N -0.033 5.033 4 N -0.135 5.135 5 C -0.110 4.110 6 C -0.124 4.124 7 C -0.227 4.227 8 C 0.390 3.610 9 O -0.431 6.431 10 N -0.331 5.331 11 C -0.063 4.063 12 C -0.029 4.029 13 O -0.300 6.300 14 C 0.032 3.968 15 H 0.096 0.904 16 C 0.065 3.935 17 H 0.081 0.919 18 C -0.207 4.207 19 N -0.368 5.368 20 C -0.363 4.363 21 H 0.095 0.905 22 C -0.268 4.268 23 N -0.619 5.619 24 Si 0.797 3.203 25 H -0.190 1.190 26 H -0.224 1.224 27 H -0.225 1.225 28 C -0.026 4.026 29 N -0.096 5.096 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.136 0.864 33 H 0.150 0.850 34 H 0.148 0.852 35 H 0.105 0.895 36 H 0.115 0.885 37 H 0.100 0.900 38 H 0.155 0.845 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.146 0.854 42 H 0.064 0.936 43 H 0.058 0.942 44 H 0.086 0.914 45 H 0.209 0.791 46 H 0.056 0.944 47 H 0.107 0.893 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.760 -11.237 -19.260 27.305 hybrid contribution 1.470 0.800 0.649 1.796 sum -14.290 -10.437 -18.610 25.680 Atomic orbital electron populations 1.22177 0.91602 1.05697 1.02796 1.22711 0.97209 0.71939 1.08214 1.48893 1.41504 1.14299 0.98576 1.73947 1.19055 1.04824 1.15679 1.23580 1.00510 0.94597 0.92345 1.20249 1.02732 0.92303 0.97076 1.22676 1.11661 0.93758 0.94628 1.16990 0.77986 0.84860 0.81192 1.90750 1.46804 1.30418 1.75084 1.48050 1.56108 1.23977 1.04917 1.23143 0.95942 0.87732 0.99507 1.23160 0.93777 0.94101 0.91901 1.88058 1.75937 1.32199 1.33853 1.22653 0.93726 0.86964 0.93420 0.90408 1.20507 0.88129 0.93584 0.91275 0.91924 1.22145 0.98292 1.00682 0.99581 1.42545 1.24520 1.05734 1.64008 1.19659 1.00485 0.91055 1.25107 0.90519 1.25473 1.01445 0.96590 1.03333 1.69842 1.33239 1.08576 1.50255 0.85155 0.79094 0.78567 0.77467 1.19001 1.22363 1.22534 1.22183 0.97402 0.91891 0.91111 1.74166 1.15505 1.04186 1.15766 0.92216 0.92330 0.86450 0.85006 0.85191 0.89514 0.88520 0.89953 0.84503 0.91468 0.91936 0.85380 0.93607 0.94216 0.91444 0.79097 0.94353 0.89272 0.91795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.01 10.24 71.98 0.74 -0.27 16 2 C 0.12 0.99 7.24 86.38 0.63 1.61 16 3 N -0.13 -2.46 3.94 -187.50 -0.74 -3.20 16 4 N -0.29 -6.50 12.01 -46.58 -0.56 -7.06 16 5 C 0.05 1.30 7.39 43.32 0.32 1.62 16 6 C -0.07 -1.33 9.95 71.24 0.71 -0.62 16 7 C -0.07 -1.89 6.88 42.24 0.29 -1.60 16 8 C 0.60 20.04 7.71 86.77 0.67 20.71 16 9 O -0.55 -20.77 14.76 -3.91 -0.06 -20.83 16 10 N -0.60 -19.53 3.02 -820.81 -2.48 -22.01 16 11 C 0.06 1.60 6.29 86.35 0.54 2.15 16 12 C 0.05 1.19 6.98 72.08 0.50 1.70 16 13 O -0.38 -13.03 9.24 -148.98 -1.38 -14.40 16 14 C 0.09 3.17 2.57 30.70 0.08 3.25 16 15 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 16 C 0.17 6.95 2.80 44.99 0.13 7.07 16 17 H 0.06 2.47 8.08 -2.39 -0.02 2.45 16 18 C -0.15 -5.34 9.30 71.98 0.67 -4.67 16 19 N -0.73 -36.82 4.24 -322.94 -1.37 -38.19 16 20 C -0.23 -12.85 9.93 84.03 0.83 -12.02 16 21 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 22 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 23 N -0.97 -60.18 13.06 21.65 0.28 -59.90 16 24 Si 0.97 47.10 29.55 68.60 2.03 49.13 16 25 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 26 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 27 H -0.30 -14.62 7.11 99.48 0.71 -13.92 16 28 C 0.10 3.62 5.84 86.36 0.50 4.12 16 29 N -0.25 -5.83 8.68 -48.17 -0.42 -6.25 16 30 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.12 0.07 8.14 -2.38 -0.02 0.05 16 33 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.08 1.89 6.90 -2.39 -0.02 1.88 16 38 H 0.14 3.20 4.37 -5.24 -0.02 3.17 16 39 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.13 2.51 8.14 -2.39 -0.02 2.49 16 42 H 0.04 1.75 7.57 -2.39 -0.02 1.74 16 43 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.38 20.90 7.08 -92.71 -0.66 20.24 16 46 H 0.25 14.99 8.31 -92.70 -0.77 14.22 16 47 H 0.09 3.45 7.06 -2.39 -0.02 3.43 16 48 H 0.06 2.88 6.94 -2.39 -0.02 2.86 16 Total: -1.00 -74.35 388.43 2.69 -71.66 By element: Atomic # 1 Polarization: 31.67 SS G_CDS: 0.31 Total: 31.98 kcal Atomic # 6 Polarization: 12.00 SS G_CDS: 7.08 Total: 19.08 kcal Atomic # 7 Polarization: -131.33 SS G_CDS: -5.28 Total: -136.61 kcal Atomic # 8 Polarization: -33.80 SS G_CDS: -1.43 Total: -35.23 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -74.35 2.69 -71.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675628776.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.590 kcal (2) G-P(sol) polarization free energy of solvation -74.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds