Wall clock time and date at job start Tue Mar 31 2020 20:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.47376 * 2 1 4 4 C 1.35405 * 126.43825 * 265.02302 * 3 2 1 5 5 C 1.35563 * 107.16025 * 179.97438 * 4 3 2 6 6 N 1.33100 * 108.34951 * 0.25764 * 5 4 3 7 7 C 1.31611 * 109.09408 * 359.57119 * 6 5 4 8 8 C 1.47411 * 125.86099 * 180.16646 * 7 6 5 9 9 O 1.21605 * 119.99933 * 175.27394 * 8 7 6 10 10 N 1.34772 * 120.00415 * 355.27875 * 8 7 6 11 11 C 1.46502 * 119.99655 * 2.56697 * 10 8 7 12 12 C 1.46496 * 120.00455 * 182.56475 * 10 8 7 13 13 C 1.53001 * 109.46893 * 89.99852 * 12 10 8 14 14 H 1.08997 * 109.47252 * 65.00516 * 13 12 10 15 15 C 1.53005 * 109.46867 * 185.00128 * 13 12 10 16 16 N 1.46893 * 109.47241 * 304.99946 * 13 12 10 17 17 C 1.46902 * 111.00031 * 154.99783 * 16 13 12 18 18 C 1.50703 * 109.47277 * 180.02562 * 17 16 13 19 19 O 1.21295 * 119.99783 * 359.97438 * 18 17 16 20 20 N 1.34778 * 120.00184 * 180.02562 * 18 17 16 21 21 C 1.37091 * 119.99992 * 180.02562 * 20 18 17 22 22 H 1.08002 * 120.00246 * 359.97438 * 21 20 18 23 23 C 1.38955 * 119.99745 * 179.97438 * 21 20 18 24 24 N 1.31408 * 120.00034 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99753 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47200 * 89.99997 * 25 23 21 27 27 H 1.48500 * 109.47124 * 209.99597 * 25 23 21 28 28 H 1.48500 * 109.47029 * 329.99704 * 25 23 21 29 29 H 1.08994 * 109.47311 * 300.00658 * 1 2 3 30 30 H 1.09010 * 109.46552 * 60.00535 * 1 2 3 31 31 H 1.08999 * 109.47325 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47311 * 239.99342 * 2 1 3 33 33 H 1.09000 * 109.46994 * 119.99783 * 2 1 3 34 34 H 1.08001 * 126.41756 * 359.97405 * 4 3 2 35 35 H 1.08001 * 125.82196 * 180.02562 * 5 4 3 36 36 H 1.09002 * 109.47287 * 83.85486 * 11 10 8 37 37 H 1.09001 * 109.46998 * 203.85627 * 11 10 8 38 38 H 1.09000 * 109.47032 * 323.85279 * 11 10 8 39 39 H 1.09000 * 109.47590 * 209.99763 * 12 10 8 40 40 H 1.08995 * 109.47030 * 330.00064 * 12 10 8 41 41 H 1.08992 * 109.47082 * 60.00585 * 15 13 12 42 42 H 1.09009 * 109.46792 * 180.02562 * 15 13 12 43 43 H 1.08999 * 109.47414 * 299.99652 * 15 13 12 44 44 H 1.00893 * 111.00280 * 278.95654 * 16 13 12 45 45 H 1.09003 * 109.47495 * 300.00599 * 17 16 13 46 46 H 1.09002 * 109.46816 * 60.00158 * 17 16 13 47 47 H 0.96999 * 119.99558 * 359.97438 * 20 18 17 48 48 H 0.97004 * 119.99953 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3756 2.1079 -1.0852 5 6 2.7650 3.3274 -0.6394 6 7 2.6540 3.3438 0.6869 7 6 2.1985 2.1785 1.0952 8 6 1.9341 1.7968 2.4943 9 8 1.4315 0.7184 2.7457 10 7 2.2491 2.6430 3.4948 11 6 2.8023 3.9648 3.1893 12 6 2.0384 2.2413 4.8877 13 6 3.2987 1.5532 5.4162 14 1 4.1194 2.2699 5.4439 15 6 3.0366 1.0233 6.8274 16 7 3.6540 0.4357 4.5316 17 6 5.0890 0.1330 4.6162 18 6 5.4152 -1.0156 3.6968 19 8 4.5384 -1.5317 3.0364 20 7 6.6810 -1.4701 3.6091 21 6 6.9778 -2.5147 2.7723 22 1 6.1973 -2.9737 2.1836 23 6 8.2830 -2.9829 2.6815 24 7 9.2328 -2.4241 3.3974 25 14 8.6873 -4.4067 1.5418 26 1 9.0463 -3.8804 0.2003 27 1 9.8321 -5.1739 2.0950 28 1 7.5050 -5.2975 1.4240 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.3542 1.7778 -2.1133 35 1 3.1104 4.1449 -1.2550 36 1 1.9891 4.6583 2.9751 37 1 3.3726 4.3265 4.0449 38 1 3.4568 3.8928 2.3207 39 1 1.8253 3.1230 5.4920 40 1 1.1970 1.5507 4.9433 41 1 2.2160 0.3066 6.7998 42 1 3.9347 0.5335 7.2042 43 1 2.7730 1.8525 7.4839 44 1 3.0993 -0.3809 4.7400 45 1 5.6636 1.0103 4.3191 46 1 5.3434 -0.1378 5.6410 47 1 7.3821 -1.0576 4.1375 48 1 10.1439 -2.7507 3.3337 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676342529.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:18 Heat of formation + Delta-G solvation = 8.525569 kcal Electronic energy + Delta-G solvation = -30673.541648 eV Core-core repulsion = 26572.438883 eV Total energy + Delta-G solvation = -4101.102765 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.16306 -39.33449 -38.19278 -36.61337 -35.33941 -34.33611 -33.80022 -31.30536 -30.90031 -30.23272 -29.48636 -27.17435 -26.19957 -25.97700 -23.96529 -23.78825 -22.35208 -21.35782 -20.52493 -19.28350 -18.92580 -17.84350 -17.17263 -16.38008 -16.13877 -15.81251 -15.58930 -15.14405 -14.76906 -14.61197 -14.52050 -14.28551 -13.88503 -13.76968 -13.72884 -13.40892 -13.10437 -13.03598 -12.63696 -12.56841 -12.44541 -12.23837 -12.08532 -12.03443 -11.98504 -11.59087 -11.48786 -11.29867 -11.17736 -11.01541 -10.87070 -10.38067 -10.18671 -9.92085 -9.65779 -9.61911 -9.46414 -8.54800 -8.41075 -8.23134 -7.92361 -7.80843 -6.37896 -3.78206 1.63103 2.56472 2.80456 3.19117 3.27105 3.32929 3.35501 3.74845 3.98173 4.14986 4.38088 4.47797 4.77574 4.80140 4.96194 5.06352 5.13955 5.19972 5.27668 5.31320 5.33573 5.35750 5.42573 5.48427 5.51873 5.64603 5.68767 5.76493 5.81682 5.85149 5.88746 5.97637 6.07554 6.10661 6.14250 6.19481 6.34844 6.41568 6.65388 6.83601 7.08913 7.38683 7.55464 7.58143 7.86522 7.93055 8.11077 8.49077 8.66987 9.22508 9.59976 10.12521 10.80179 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009575 B = 0.003883 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2923.454167 B = 7208.946560 C = 8829.144915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.094 3.906 3 N -0.407 5.407 4 C -0.036 4.036 5 C -0.037 4.037 6 N -0.452 5.452 7 C 0.158 3.842 8 C 0.617 3.383 9 O -0.517 6.517 10 N -0.587 5.587 11 C 0.075 3.925 12 C 0.132 3.868 13 C 0.064 3.936 14 H 0.076 0.924 15 C -0.181 4.181 16 N -0.651 5.651 17 C 0.052 3.948 18 C 0.443 3.557 19 O -0.578 6.578 20 N -0.567 5.567 21 C -0.296 4.296 22 H 0.101 0.899 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.928 3.072 26 H -0.279 1.279 27 H -0.284 1.284 28 H -0.270 1.270 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.120 0.880 34 H 0.177 0.823 35 H 0.173 0.827 36 H 0.050 0.950 37 H 0.057 0.943 38 H 0.105 0.895 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.352 0.648 45 H 0.080 0.920 46 H 0.040 0.960 47 H 0.391 0.609 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.153 12.998 -0.938 19.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.028 4.028 3 N -0.086 5.086 4 C -0.174 4.174 5 C -0.190 4.190 6 N -0.174 5.174 7 C -0.102 4.102 8 C 0.403 3.597 9 O -0.391 6.391 10 N -0.319 5.319 11 C -0.068 4.068 12 C 0.009 3.991 13 C -0.048 4.048 14 H 0.095 0.905 15 C -0.240 4.240 16 N -0.283 5.283 17 C -0.081 4.081 18 C 0.229 3.771 19 O -0.461 6.461 20 N -0.205 5.205 21 C -0.426 4.426 22 H 0.119 0.881 23 C -0.180 4.180 24 N -0.545 5.545 25 Si 0.756 3.244 26 H -0.205 1.205 27 H -0.209 1.209 28 H -0.195 1.195 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.107 0.893 33 H 0.138 0.862 34 H 0.195 0.805 35 H 0.190 0.810 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.123 0.877 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.173 0.827 45 H 0.098 0.902 46 H 0.058 0.942 47 H 0.224 0.776 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.645 12.842 -1.228 19.517 hybrid contribution 0.973 -1.426 -0.029 1.727 sum -13.672 11.416 -1.257 17.856 Atomic orbital electron populations 1.22031 0.93869 1.03194 1.02458 1.22159 0.95785 0.78645 1.06171 1.45217 1.44559 1.12832 1.06038 1.22848 1.07476 0.93987 0.93133 1.22409 1.07630 0.97452 0.91486 1.70313 1.16118 1.19226 1.11770 1.22750 1.08729 0.88212 0.90503 1.16197 0.78517 0.83492 0.81508 1.90777 1.43814 1.21170 1.83322 1.47059 1.63501 1.16131 1.05172 1.22196 0.99328 0.82471 1.02782 1.21505 0.97866 0.99131 0.80597 1.22025 0.98041 0.94677 0.90031 0.90534 1.22463 1.02270 1.01624 0.97678 1.60077 1.03596 1.10267 1.54360 1.21678 0.90332 0.98455 0.97604 1.19857 0.83717 0.86603 0.86964 1.90526 1.46834 1.60827 1.47932 1.41866 1.07418 1.31356 1.39818 1.19665 0.94333 1.09009 1.19571 0.88116 1.25235 0.95323 0.99230 0.98203 1.69614 1.01663 1.42325 1.40900 0.85886 0.78093 0.80709 0.79758 1.20474 1.20942 1.19491 0.91389 0.92807 0.90483 0.89259 0.86213 0.80548 0.80974 0.93156 0.92428 0.87660 0.90365 0.89834 0.92150 0.92317 0.92217 0.82729 0.90175 0.94227 0.77589 0.91967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 10.17 37.16 0.38 -1.41 16 2 C 0.09 1.28 6.14 -4.04 -0.02 1.26 16 3 N -0.41 -5.99 2.76 -114.59 -0.32 -6.31 16 4 C -0.04 -0.44 11.53 -16.93 -0.20 -0.63 16 5 C -0.04 -0.47 11.85 -17.96 -0.21 -0.68 16 6 N -0.45 -6.76 7.68 -11.26 -0.09 -6.85 16 7 C 0.16 2.57 7.51 -154.53 -1.16 1.41 16 8 C 0.62 10.34 6.96 -12.53 -0.09 10.25 16 9 O -0.52 -9.59 13.14 5.27 0.07 -9.52 16 10 N -0.59 -8.15 2.77 -182.86 -0.51 -8.66 16 11 C 0.08 0.89 9.58 59.85 0.57 1.46 16 12 C 0.13 1.57 5.18 -4.04 -0.02 1.54 16 13 C 0.06 0.81 2.89 -67.71 -0.20 0.62 16 14 H 0.08 0.95 7.80 -51.93 -0.40 0.54 16 15 C -0.18 -1.91 9.16 37.16 0.34 -1.57 16 16 N -0.65 -11.12 4.25 -107.99 -0.46 -11.57 16 17 C 0.05 0.97 5.97 -4.97 -0.03 0.94 16 18 C 0.44 10.85 7.82 -10.98 -0.09 10.77 16 19 O -0.58 -16.11 15.78 5.54 0.09 -16.02 16 20 N -0.57 -14.83 5.29 -10.96 -0.06 -14.89 16 21 C -0.30 -8.45 9.68 -14.93 -0.14 -8.59 16 22 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -25.07 13.05 55.50 0.72 -24.35 16 25 Si 0.93 21.44 29.55 -169.99 -5.02 16.41 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 28 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 29 H 0.07 0.89 7.61 -51.93 -0.40 0.50 16 30 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.09 1.03 8.13 -51.93 -0.42 0.60 16 33 H 0.12 2.08 6.76 -51.93 -0.35 1.73 16 34 H 0.18 1.51 8.06 -52.49 -0.42 1.08 16 35 H 0.17 1.61 8.06 -52.49 -0.42 1.19 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.56 8.03 -51.93 -0.42 0.14 16 38 H 0.11 1.46 5.36 -51.93 -0.28 1.18 16 39 H 0.08 0.69 8.07 -51.93 -0.42 0.27 16 40 H 0.08 1.07 7.39 -51.93 -0.38 0.69 16 41 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 42 H 0.06 0.66 7.45 -51.92 -0.39 0.28 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.35 6.57 8.17 -39.30 -0.32 6.25 16 45 H 0.08 1.43 8.06 -51.93 -0.42 1.01 16 46 H 0.04 0.67 7.44 -51.93 -0.39 0.28 16 47 H 0.39 9.83 7.90 -40.82 -0.32 9.51 16 48 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 395.96 15.07 5.97 5.97 Total: -1.00 -34.24 395.96 -7.94 -42.18 By element: Atomic # 1 Polarization: 25.14 SS G_CDS: -7.38 Total: 17.76 kcal Atomic # 6 Polarization: 16.80 SS G_CDS: -0.96 Total: 15.84 kcal Atomic # 7 Polarization: -71.92 SS G_CDS: -0.70 Total: -72.62 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: 0.16 Total: -25.54 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.24 -7.94 -42.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676342529.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.707 kcal (2) G-P(sol) polarization free energy of solvation -34.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds