Wall clock time and date at job start Tue Mar 31 2020 20:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.47376 * 2 1 4 4 C 1.35405 * 126.43825 * 265.02302 * 3 2 1 5 5 C 1.35563 * 107.16025 * 179.97438 * 4 3 2 6 6 N 1.33100 * 108.34951 * 0.25764 * 5 4 3 7 7 C 1.31611 * 109.09408 * 359.57119 * 6 5 4 8 8 C 1.47411 * 125.86099 * 180.16646 * 7 6 5 9 9 O 1.21605 * 119.99933 * 175.27394 * 8 7 6 10 10 N 1.34772 * 120.00415 * 355.27875 * 8 7 6 11 11 C 1.46502 * 119.99655 * 2.56697 * 10 8 7 12 12 C 1.46496 * 120.00455 * 182.56475 * 10 8 7 13 13 C 1.53001 * 109.46893 * 89.99852 * 12 10 8 14 14 H 1.08997 * 109.47252 * 65.00516 * 13 12 10 15 15 C 1.53005 * 109.46867 * 185.00128 * 13 12 10 16 16 N 1.46893 * 109.47241 * 304.99946 * 13 12 10 17 17 C 1.46902 * 111.00031 * 154.99783 * 16 13 12 18 18 C 1.50703 * 109.47277 * 180.02562 * 17 16 13 19 19 O 1.21295 * 119.99783 * 359.97438 * 18 17 16 20 20 N 1.34778 * 120.00184 * 180.02562 * 18 17 16 21 21 C 1.37091 * 119.99992 * 180.02562 * 20 18 17 22 22 H 1.08002 * 120.00246 * 359.97438 * 21 20 18 23 23 C 1.38955 * 119.99745 * 179.97438 * 21 20 18 24 24 N 1.31408 * 120.00034 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99753 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47200 * 89.99997 * 25 23 21 27 27 H 1.48500 * 109.47124 * 209.99597 * 25 23 21 28 28 H 1.48500 * 109.47029 * 329.99704 * 25 23 21 29 29 H 1.08994 * 109.47311 * 300.00658 * 1 2 3 30 30 H 1.09010 * 109.46552 * 60.00535 * 1 2 3 31 31 H 1.08999 * 109.47325 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47311 * 239.99342 * 2 1 3 33 33 H 1.09000 * 109.46994 * 119.99783 * 2 1 3 34 34 H 1.08001 * 126.41756 * 359.97405 * 4 3 2 35 35 H 1.08001 * 125.82196 * 180.02562 * 5 4 3 36 36 H 1.09002 * 109.47287 * 83.85486 * 11 10 8 37 37 H 1.09001 * 109.46998 * 203.85627 * 11 10 8 38 38 H 1.09000 * 109.47032 * 323.85279 * 11 10 8 39 39 H 1.09000 * 109.47590 * 209.99763 * 12 10 8 40 40 H 1.08995 * 109.47030 * 330.00064 * 12 10 8 41 41 H 1.08992 * 109.47082 * 60.00585 * 15 13 12 42 42 H 1.09009 * 109.46792 * 180.02562 * 15 13 12 43 43 H 1.08999 * 109.47414 * 299.99652 * 15 13 12 44 44 H 1.00893 * 111.00280 * 278.95654 * 16 13 12 45 45 H 1.09003 * 109.47495 * 300.00599 * 17 16 13 46 46 H 1.09002 * 109.46816 * 60.00158 * 17 16 13 47 47 H 0.96999 * 119.99558 * 359.97438 * 20 18 17 48 48 H 0.97004 * 119.99953 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3756 2.1079 -1.0852 5 6 2.7650 3.3274 -0.6394 6 7 2.6540 3.3438 0.6869 7 6 2.1985 2.1785 1.0952 8 6 1.9341 1.7968 2.4943 9 8 1.4315 0.7184 2.7457 10 7 2.2491 2.6430 3.4948 11 6 2.8023 3.9648 3.1893 12 6 2.0384 2.2413 4.8877 13 6 3.2987 1.5532 5.4162 14 1 4.1194 2.2699 5.4439 15 6 3.0366 1.0233 6.8274 16 7 3.6540 0.4357 4.5316 17 6 5.0890 0.1330 4.6162 18 6 5.4152 -1.0156 3.6968 19 8 4.5384 -1.5317 3.0364 20 7 6.6810 -1.4701 3.6091 21 6 6.9778 -2.5147 2.7723 22 1 6.1973 -2.9737 2.1836 23 6 8.2830 -2.9829 2.6815 24 7 9.2328 -2.4241 3.3974 25 14 8.6873 -4.4067 1.5418 26 1 9.0463 -3.8804 0.2003 27 1 9.8321 -5.1739 2.0950 28 1 7.5050 -5.2975 1.4240 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.3542 1.7778 -2.1133 35 1 3.1104 4.1449 -1.2550 36 1 1.9891 4.6583 2.9751 37 1 3.3726 4.3265 4.0449 38 1 3.4568 3.8928 2.3207 39 1 1.8253 3.1230 5.4920 40 1 1.1970 1.5507 4.9433 41 1 2.2160 0.3066 6.7998 42 1 3.9347 0.5335 7.2042 43 1 2.7730 1.8525 7.4839 44 1 3.0993 -0.3809 4.7400 45 1 5.6636 1.0103 4.3191 46 1 5.3434 -0.1378 5.6410 47 1 7.3821 -1.0576 4.1375 48 1 10.1439 -2.7507 3.3337 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676342529.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:17 Heat of formation + Delta-G solvation = -15.102718 kcal Electronic energy + Delta-G solvation = -30674.566248 eV Core-core repulsion = 26572.438883 eV Total energy + Delta-G solvation = -4102.127364 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.21022 -40.53617 -40.02347 -37.88906 -36.48900 -35.93093 -35.38442 -33.30576 -32.24467 -31.28804 -30.51717 -28.10974 -27.94392 -27.01158 -25.71518 -24.87146 -23.42504 -22.36808 -21.59199 -21.12520 -20.13105 -19.90468 -18.24505 -17.83840 -17.47067 -16.95738 -16.84796 -16.61674 -16.38319 -16.07098 -15.69675 -15.54054 -15.52746 -15.08136 -14.72486 -14.65361 -14.39494 -14.26807 -13.82480 -13.66727 -13.59877 -13.53533 -13.41194 -13.23240 -13.08388 -12.98998 -12.89955 -12.75253 -12.47256 -12.40272 -12.20947 -12.13850 -11.86205 -11.52363 -11.08110 -10.76407 -10.69129 -10.35104 -10.02767 -9.61186 -9.38495 -9.07451 -8.48317 -5.97022 0.52820 1.35171 1.38185 1.51348 1.53674 1.79478 2.04420 2.26698 2.31370 2.59845 2.96285 3.18605 3.38963 3.55835 3.74217 3.85477 3.96668 4.06180 4.18682 4.32539 4.33991 4.36370 4.42352 4.44457 4.52814 4.55348 4.56895 4.60445 4.71336 4.78522 4.83595 4.88949 4.98412 5.04026 5.11145 5.18766 5.28698 5.37874 5.39466 5.66812 5.86039 5.91850 6.02285 6.17970 6.44945 6.48487 6.59305 6.87797 7.11190 7.34253 7.54564 8.11057 8.69382 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009575 B = 0.003883 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2923.454167 B = 7208.946560 C = 8829.144915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.095 3.905 3 N -0.416 5.416 4 C -0.029 4.029 5 C -0.050 4.050 6 N -0.455 5.455 7 C 0.116 3.884 8 C 0.604 3.396 9 O -0.550 6.550 10 N -0.585 5.585 11 C 0.078 3.922 12 C 0.131 3.869 13 C 0.066 3.934 14 H 0.087 0.913 15 C -0.172 4.172 16 N -0.665 5.665 17 C 0.069 3.931 18 C 0.437 3.563 19 O -0.617 6.617 20 N -0.575 5.575 21 C -0.332 4.332 22 H 0.075 0.925 23 C -0.013 4.013 24 N -0.921 5.921 25 Si 0.992 3.008 26 H -0.271 1.271 27 H -0.269 1.269 28 H -0.273 1.273 29 H 0.043 0.957 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.111 0.889 33 H 0.074 0.926 34 H 0.216 0.784 35 H 0.205 0.795 36 H 0.059 0.941 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.119 0.881 40 H 0.068 0.932 41 H 0.053 0.947 42 H 0.051 0.949 43 H 0.089 0.911 44 H 0.339 0.661 45 H 0.092 0.908 46 H 0.062 0.938 47 H 0.395 0.605 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.811 14.388 -1.250 19.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.026 4.026 3 N -0.096 5.096 4 C -0.167 4.167 5 C -0.202 4.202 6 N -0.178 5.178 7 C -0.142 4.142 8 C 0.390 3.610 9 O -0.427 6.427 10 N -0.316 5.316 11 C -0.064 4.064 12 C 0.009 3.991 13 C -0.045 4.045 14 H 0.105 0.895 15 C -0.231 4.231 16 N -0.297 5.297 17 C -0.063 4.063 18 C 0.225 3.775 19 O -0.503 6.503 20 N -0.213 5.213 21 C -0.462 4.462 22 H 0.093 0.907 23 C -0.212 4.212 24 N -0.562 5.562 25 Si 0.816 3.184 26 H -0.196 1.196 27 H -0.193 1.193 28 H -0.198 1.198 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.108 0.892 32 H 0.130 0.870 33 H 0.093 0.907 34 H 0.232 0.768 35 H 0.222 0.778 36 H 0.078 0.922 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.137 0.863 40 H 0.087 0.913 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.108 0.892 44 H 0.158 0.842 45 H 0.110 0.890 46 H 0.080 0.920 47 H 0.228 0.772 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.283 14.289 -1.490 20.259 hybrid contribution 0.864 -1.783 0.033 1.981 sum -13.420 12.507 -1.457 18.402 Atomic orbital electron populations 1.21927 0.92134 1.03968 1.02207 1.22105 0.97192 0.78410 1.04928 1.45432 1.44602 1.13058 1.06545 1.23578 1.05472 0.93536 0.94105 1.23069 1.07439 0.98707 0.90999 1.70315 1.15691 1.18754 1.13062 1.22857 1.11207 0.89284 0.90876 1.16541 0.78490 0.83542 0.82441 1.90746 1.45508 1.22545 1.83926 1.47230 1.62602 1.16355 1.05430 1.22221 0.99503 0.81607 1.03116 1.21686 0.96895 1.00437 0.80117 1.22150 0.98666 0.93228 0.90479 0.89499 1.22362 1.01744 1.02432 0.96590 1.60072 1.02214 1.10759 1.56633 1.21493 0.91730 0.96110 0.96975 1.20914 0.82628 0.87216 0.86751 1.90502 1.47815 1.62368 1.49601 1.41932 1.08190 1.31282 1.39881 1.19614 0.94577 1.10798 1.21163 0.90675 1.26030 0.94583 1.01331 0.99279 1.69675 1.02066 1.43129 1.41344 0.84945 0.77942 0.77528 0.78016 1.19615 1.19321 1.19832 0.93737 0.90710 0.89207 0.87041 0.90747 0.76766 0.77841 0.92211 0.89791 0.89689 0.86314 0.91302 0.92786 0.92968 0.89208 0.84178 0.88968 0.91990 0.77171 0.91300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 10.17 71.98 0.73 -2.60 16 2 C 0.10 2.70 6.14 86.38 0.53 3.23 16 3 N -0.42 -12.39 2.76 -516.46 -1.42 -13.82 16 4 C -0.03 -0.66 11.53 83.52 0.96 0.31 16 5 C -0.05 -1.18 11.85 83.88 0.99 -0.19 16 6 N -0.46 -13.51 7.68 -189.53 -1.45 -14.96 16 7 C 0.12 3.87 7.51 136.28 1.02 4.90 16 8 C 0.60 21.03 6.96 86.66 0.60 21.64 16 9 O -0.55 -21.83 13.14 -4.05 -0.05 -21.89 16 10 N -0.59 -16.10 2.77 -850.70 -2.36 -18.46 16 11 C 0.08 1.74 9.58 127.77 1.22 2.97 16 12 C 0.13 2.94 5.18 86.38 0.45 3.39 16 13 C 0.07 1.57 2.89 44.92 0.13 1.69 16 14 H 0.09 1.92 7.80 -2.39 -0.02 1.90 16 15 C -0.17 -3.31 9.16 71.98 0.66 -2.65 16 16 N -0.66 -23.03 4.25 -495.57 -2.11 -25.14 16 17 C 0.07 2.59 5.97 85.56 0.51 3.10 16 18 C 0.44 22.13 7.82 87.66 0.69 22.81 16 19 O -0.62 -36.18 15.78 -3.08 -0.05 -36.23 16 20 N -0.58 -30.90 5.29 -306.98 -1.62 -32.52 16 21 C -0.33 -19.50 9.68 84.04 0.81 -18.69 16 22 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 23 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 24 N -0.92 -50.85 13.05 21.66 0.28 -50.57 16 25 Si 0.99 43.88 29.55 68.60 2.03 45.91 16 26 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 27 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 28 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 29 H 0.04 1.23 7.61 -2.39 -0.02 1.21 16 30 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.11 2.55 8.13 -2.39 -0.02 2.53 16 33 H 0.07 2.82 6.76 -2.39 -0.02 2.81 16 34 H 0.22 2.99 8.06 -2.91 -0.02 2.97 16 35 H 0.20 3.29 8.06 -2.91 -0.02 3.26 16 36 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.08 1.40 8.03 -2.39 -0.02 1.39 16 38 H 0.08 2.32 5.36 -2.39 -0.01 2.31 16 39 H 0.12 1.70 8.07 -2.39 -0.02 1.68 16 40 H 0.07 1.77 7.39 -2.39 -0.02 1.76 16 41 H 0.05 1.12 8.13 -2.39 -0.02 1.10 16 42 H 0.05 1.08 7.45 -2.38 -0.02 1.07 16 43 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.34 13.20 8.17 -89.70 -0.73 12.47 16 45 H 0.09 3.22 8.06 -2.39 -0.02 3.20 16 46 H 0.06 2.04 7.44 -2.39 -0.02 2.02 16 47 H 0.39 20.20 7.90 -92.71 -0.73 19.46 16 48 H 0.28 14.30 8.31 -92.70 -0.77 13.53 16 Total: -1.00 -78.46 395.96 2.55 -75.91 By element: Atomic # 1 Polarization: 52.57 SS G_CDS: -0.48 Total: 52.09 kcal Atomic # 6 Polarization: 29.89 SS G_CDS: 9.78 Total: 39.67 kcal Atomic # 7 Polarization: -146.78 SS G_CDS: -8.69 Total: -155.47 kcal Atomic # 8 Polarization: -58.02 SS G_CDS: -0.10 Total: -58.12 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -78.46 2.55 -75.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676342529.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.809 kcal (2) G-P(sol) polarization free energy of solvation -78.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds